Rh1AG462400

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004548
Physical Location & Seq
Reverse (-)
67881543 .. 67881764
222 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG462400.1

Sequence Viewer

Length: 222 bp
ATGGATGGAGTAAGAGAGCTGAAGAACTGTTCCCACGTCTTTCATAGAGAGTGCTTGGATCTTTGGGTTGCTGAGGGTCAGTTCACCTGTCCTCTGTGCAGGTCTAAGCTATTGCCAACTGCTACGGCTACTCCAAATGAACATTGGAAACCTGAAGGAGGGGATCCATGGAGATCGGAGAGGATGATTTACTTGTTCGGTGATGATTACGTCTTCCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

73

Amino Acids

8.53

Weight (kDa)

5.46

Isoelectric Point (pI)

38.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4 PF00097 7 - 33 8.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 7 - 33 2.7e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 8 - 34 1.5e-08 Ring finger domain
zf-rbx1 PF12678 9 - 34 7.7e-08 RING-H2 zinc finger domain
zf-RING_UBOX PF13445 9 - 31 7.2e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 90
AclWI GGATC 3 cut(s) 66, 158, 171
AcuI CTGAAG 2 cut(s) 41, 174
AfiI CCNNNNNNNGG 1 cut(s) 158
AjiI CACGTC 1 cut(s) 37
AluBI AGCT 2 cut(s) 19, 109
AluI AGCT 2 cut(s) 19, 109
AlwI GGATC 3 cut(s) 66, 158, 171
AsuHPI GGTGA 2 cut(s) 76, 212
BamHI GGATCC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 205
BbvCI CCTCAGC 1 cut(s) 72
BceAI ACGGC 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 90
BmgBI CACGTC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 205
Bpu10I CCTNAGC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 2 cut(s) 10, 189
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 217
BsgI GTGCAG 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 158
Bsp143I GATC 3 cut(s) 58, 163, 173
Bsp19I CCATGG 1 cut(s) 167
BspCNI CTCAG 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 165
BspMI ACCTGC 1 cut(s) 90
BspPI GGATC 3 cut(s) 66, 158, 171
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 3 cut(s) 58, 163, 173
BssT1I CCWWGG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 29
BstDEI CTNAG 2 cut(s) 72, 105
BstDSI CCRYGG 1 cut(s) 167
BstENI CCTNNNNNAGG 1 cut(s) 156
BstF5I GGATG 2 cut(s) 10, 189
BstKTI GATC 3 cut(s) 61, 166, 176
BstMBI GATC 3 cut(s) 58, 163, 173
BstV2I GAAGAC 1 cut(s) 205
BstX2I RGATCY 2 cut(s) 58, 163
BstYI RGATCY 2 cut(s) 58, 163
BtgI CCRYGG 1 cut(s) 167
BtrI CACGTC 1 cut(s) 37
BtsCI GGATG 2 cut(s) 10, 189
BveI ACCTGC 1 cut(s) 90
CviAII CATG 1 cut(s) 168
CviJI RGCY 3 cut(s) 19, 109, 128
CviKI_1 RGCY 3 cut(s) 19, 109, 128
DdeI CTNAG 2 cut(s) 72, 105
DpnI GATC 3 cut(s) 60, 165, 175
DpnII GATC 3 cut(s) 58, 163, 173
Eco130I CCWWGG 1 cut(s) 167
Eco57I CTGAAG 2 cut(s) 41, 174
EcoNI CCTNNNNNAGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 1 cut(s) 171
FaiI YATR 2 cut(s) 45, 169
FatI CATG 1 cut(s) 167
FokI GGATG 2 cut(s) 17, 196
Hin1II CATG 1 cut(s) 171
HphI GGTGA 2 cut(s) 76, 212
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 178
Hpy8I GTNNAC 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 2 cut(s) 36, 210
HpyCH4V TGCA 1 cut(s) 99
HpyF3I CTNAG 2 cut(s) 72, 105
HpySE526I ACGT 2 cut(s) 36, 210
Hsp92II CATG 1 cut(s) 171
Kzo9I GATC 3 cut(s) 58, 163, 173
LpnPI CCDG 3 cut(s) 85, 100, 165
MaeII ACGT 2 cut(s) 36, 210
MalI GATC 3 cut(s) 60, 165, 175
MboI GATC 3 cut(s) 58, 163, 173
MboII GAAGA 2 cut(s) 34, 205
MflI RGATCY 2 cut(s) 58, 163
MnlI CCTC 4 cut(s) 67, 102, 152, 174
NcoI CCATGG 1 cut(s) 167
NdeII GATC 3 cut(s) 58, 163, 173
NlaIII CATG 1 cut(s) 171
NlaIV GGNNCC 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 165
PsuI RGATCY 2 cut(s) 58, 163
Sau3AI GATC 3 cut(s) 58, 163, 173
SetI ASST 7 cut(s) 21, 39, 89, 104, 111, 154, 213
SgeI CNNG 7 cut(s) 47, 67, 99, 112, 164, 180, 205
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 2 cut(s) 39, 213
TspDTI ATGAA 2 cut(s) 32, 153
XagI CCTNNNNNAGG 1 cut(s) 156
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.