Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8270753.1

Orthogroup ID

OG0004548

Physical Location & Seq

Genomic Coordinates Reverse (-)

203 .. 712

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8270753.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgatcgtatactcattgttcaaacctgaagttgaagacaaggtcgacactaacgatcatcatcaggtcgagatgaatttctcacctgcagccgctccgaattggttgcacttggaggtaccagtagttccggtgctagttgacactgaatcggttaatcaacttccggttgtgcaataccggaatcgaatgatggagagaagagatcaatcgcgatatagagatcacgaggatgacgagtctatgtgtatagtgtgcatgaatagcatagaggctatagatgaagtaagagagctgaagaactgttcccacgtctatcatagagagtgcttggatctttgggttgctcagggtcaggtaacctgtcctctgtgcaggtctaagctattgccaactgctagggctactccaaatgaacatttgaaacctgcgggaggggatccatggagatcggagaggatgatttacttgttcggtgatgattgcttcaagcactggatagacgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

169

Amino Acids

19.75

Weight (kDa)

5.11

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32950 FvH4_7g32960
malus_domestica	MD01G1228600.v1.1 MD07G1299400.v1.1 MD07G1299500.v1.1 MD07G1299600.v1.1
prunus_persica	Prupe.2G319200_v2.0.a1 Prupe.2G319300_v2.0.a1 Prupe.2G319400_v2.0.a1
pyrus_communis	pycom07g27170
rosa_chinensis	RchiOBHm_Chr1g0382911 RchiOBHm_Chr1g0382921
rosa_laevigata	RLG00000026149
rosa_multiflora	Rmu_co8270753.1_g000001 Rmu_co8320179.1_g000001 Rmu_sc0001785.1_g000002 Rmu_sc0010366.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277780
rosa_samantha	Rh1AG462300 Rh1AG462400 Rh1AG462500 Rh1AG462600 Rh1BG419300 Rh1BG419400 Rh1CG433000 Rh1CG433100 Rh1CG433200 Rh1CG433400 Rh1DG451400 Rh1DG451500
rosa_wichuraiana	Rw1G040940 Rw1G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	94
Acc36I	ACCTGC	3 cut(s)	94, 366, 436
Acc65I	GGTACC	1 cut(s)	118
AccB1I	GGYRCC	1 cut(s)	118
AccBSI	CCGCTC	1 cut(s)	95
AccI	GTMKAC	2 cut(s)	9, 45
AccII	CGCG	1 cut(s)	214
AciI	CCGC	2 cut(s)	93, 431
AclWI	GGATC	3 cut(s)	342, 434, 447
AcsI	RAATTY	1 cut(s)	76
AcuI	CTGAAG	2 cut(s)	48, 317
AfaI	GTAC	1 cut(s)	120
AfiI	CCNNNNNNNGG	1 cut(s)	434
AgsI	TTSAA	4 cut(s)	22, 35, 424, 490
AjiI	CACGTC	1 cut(s)	313
AluBI	AGCT	2 cut(s)	295, 385
AluI	AGCT	2 cut(s)	295, 385
AlwI	GGATC	3 cut(s)	342, 434, 447
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	76
Asp718I	GGTACC	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	75, 488
BamHI	GGATCC	1 cut(s)	439
BanI	GGYRCC	1 cut(s)	118
BauI	CACGAG	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	1 cut(s)	187
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BfaI	CTAG	2 cut(s)	137, 399
BfmI	CTRYAG	2 cut(s)	87, 276
BfuAI	ACCTGC	3 cut(s)	94, 366, 436
BisI	GCNGC	2 cut(s)	90, 93
BlsI	GCNGC	2 cut(s)	91, 94
BmgBI	CACGTC	1 cut(s)	313
BmiI	GGNNCC	2 cut(s)	120, 441
BpiI	GAAGAC	1 cut(s)	42
Bpu10I	CCTNAGC	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	443
BsaWI	WCCGGW	3 cut(s)	130, 166, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse1I	ACTGG	2 cut(s)	122, 500
Bse8I	GATNNNNATC	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	443
BseGI	GGATG	2 cut(s)	238, 465
BseJI	GATNNNNATC	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	2 cut(s)	122, 500
BseXI	GCAGC	1 cut(s)	101
BsgI	GTGCAG	1 cut(s)	394
Bsh1236I	CGCG	1 cut(s)	214
BshNI	GGYRCC	1 cut(s)	118
BsiSI	CCGG	3 cut(s)	131, 167, 181
BslI	CCNNNNNNNGG	1 cut(s)	434
Bsp143I	GATC	7 cut(s)	3, 55, 205, 223, 334, 439, 449
Bsp19I	CCATGG	1 cut(s)	443
Bsp68I	TCGCGA	1 cut(s)	214
BspACI	CCGC	2 cut(s)	93, 431
BspCNI	CTCAG	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	214
BspLI	GGNNCC	2 cut(s)	120, 441
BspMAI	CTGCAG	1 cut(s)	91
BspMI	ACCTGC	3 cut(s)	94, 366, 436
BspPI	GGATC	3 cut(s)	342, 434, 447
BspT107I	GGYRCC	1 cut(s)	118
BsrBI	CCGCTC	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	122, 500
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	7 cut(s)	3, 55, 205, 223, 334, 439, 449
BssNAI	GTATAC	1 cut(s)	10
BssSI	CACGAG	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	443
Bst1107I	GTATAC	1 cut(s)	10
Bst2BI	CACGAG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	305
Bst6I	CTCTTC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	348, 381
BstDSI	CCRYGG	1 cut(s)	443
BstEII	GGTNACC	1 cut(s)	358
BstENI	CCTNNNNNAGG	1 cut(s)	432
BstF5I	GGATG	2 cut(s)	238, 465
BstFNI	CGCG	1 cut(s)	214
BstKTI	GATC	7 cut(s)	6, 58, 208, 226, 337, 442, 452
BstMBI	GATC	7 cut(s)	3, 55, 205, 223, 334, 439, 449
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstPI	GGTNACC	1 cut(s)	358
BstSFI	CTRYAG	2 cut(s)	87, 276
BstUI	CGCG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	101
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	2 cut(s)	334, 439
BstYI	RGATCY	2 cut(s)	334, 439
BstZ17I	GTATAC	1 cut(s)	10
BtgI	CCRYGG	1 cut(s)	443
BtrI	CACGTC	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	238, 465
BtsIMutI	CAGTG	2 cut(s)	144, 493
BtuMI	TCGCGA	1 cut(s)	214
BveI	ACCTGC	3 cut(s)	94, 366, 436
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	2 cut(s)	259, 444
CviJI	RGCY	5 cut(s)	92, 275, 295, 385, 404
CviKI_1	RGCY	5 cut(s)	92, 275, 295, 385, 404
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	2 cut(s)	348, 381
DpnI	GATC	7 cut(s)	5, 57, 207, 225, 336, 441, 451
DpnII	GATC	7 cut(s)	3, 55, 205, 223, 334, 439, 449
Eam1104I	CTCTTC	1 cut(s)	196
EarI	CTCTTC	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	443
Eco57I	CTGAAG	2 cut(s)	48, 317
Eco91I	GGTNACC	1 cut(s)	358
EcoNI	CCTNNNNNAGG	1 cut(s)	432
EcoO65I	GGTNACC	1 cut(s)	358
EcoT14I	CCWWGG	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	443
FaeI	CATG	2 cut(s)	262, 447
FaiI	YATR	9 cut(s)	10, 219, 245, 251, 260, 269, 278, 321, 445
FatI	CATG	2 cut(s)	258, 443
FauI	CCCGC	1 cut(s)	424
FblI	GTMKAC	2 cut(s)	9, 45
Fnu4HI	GCNGC	2 cut(s)	90, 93
FokI	GGATG	2 cut(s)	245, 472
Fsp4HI	GCNGC	2 cut(s)	90, 93
FspBI	CTAG	2 cut(s)	137, 399
GluI	GCNGC	2 cut(s)	90, 93
HapII	CCGG	3 cut(s)	131, 167, 181
Hin1II	CATG	2 cut(s)	262, 447
HincII	GTYRAC	2 cut(s)	46, 142
HindII	GTYRAC	2 cut(s)	46, 142
HinfI	GANTC	3 cut(s)	149, 184, 239
HpaII	CCGG	3 cut(s)	131, 167, 181
HphI	GGTGA	2 cut(s)	75, 488
Hpy166II	GTNNAC	3 cut(s)	10, 46, 142
Hpy188I	TCNGA	2 cut(s)	99, 454
Hpy188III	TCNNGA	3 cut(s)	70, 213, 227
Hpy8I	GTNNAC	3 cut(s)	10, 46, 142
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	5 cut(s)	89, 109, 175, 258, 375
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	2 cut(s)	348, 381
HpySE526I	ACGT	1 cut(s)	312
Hsp92II	CATG	2 cut(s)	262, 447
KpnI	GGTACC	1 cut(s)	122
Kzo9I	GATC	7 cut(s)	3, 55, 205, 223, 334, 439, 449
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	1 cut(s)	101
MaeI	CTAG	2 cut(s)	137, 399
MaeII	ACGT	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	358
MalI	GATC	7 cut(s)	5, 57, 207, 225, 336, 441, 451
MbiI	CCGCTC	1 cut(s)	95
MboI	GATC	7 cut(s)	3, 55, 205, 223, 334, 439, 449
MboII	GAAGA	3 cut(s)	47, 213, 310
MflI	RGATCY	2 cut(s)	334, 439
MluCI	AATT	2 cut(s)	76, 100
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	6 cut(s)	109, 223, 265, 378, 428, 450
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	3 cut(s)	131, 167, 181
MvnI	CGCG	1 cut(s)	214
MwoI	GCNNNNNNNGC	1 cut(s)	264
NcoI	CCATGG	1 cut(s)	443
NdeII	GATC	7 cut(s)	3, 55, 205, 223, 334, 439, 449
NlaIII	CATG	2 cut(s)	262, 447
NlaIV	GGNNCC	2 cut(s)	120, 441
NruI	TCGCGA	1 cut(s)	214
PaqCI	CACCTGC	1 cut(s)	94
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 234
PfeI	GAWTC	2 cut(s)	149, 184
PflFI	GACNNNGTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	91, 94
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PspEI	GGTNACC	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	120, 441
PsrI	GAACNNNNNNTAC	2 cut(s)	111, 143
PstI	CTGCAG	1 cut(s)	91
PsuI	RGATCY	2 cut(s)	334, 439
PsyI	GACNNNGTC	1 cut(s)	41
RruI	TCGCGA	1 cut(s)	214
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	231
SalI	GTCGAC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	2 cut(s)	90, 93
Sau3AI	GATC	7 cut(s)	3, 55, 205, 223, 334, 439, 449
SchI	GAGTC	1 cut(s)	248
SfcI	CTRYAG	2 cut(s)	87, 276
SmiMI	CAYNNNNRTG	1 cut(s)	231
Sse9I	AATT	2 cut(s)	76, 100
SsiI	CCGC	2 cut(s)	93, 431
SspMI	CTAG	2 cut(s)	137, 399
StyI	CCWWGG	1 cut(s)	443
TaaI	ACNGT	1 cut(s)	305
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	3 cut(s)	45, 69, 187
TasI	AATT	2 cut(s)	76, 100
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	2 cut(s)	149, 184
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	2 cut(s)	151, 500
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	4 cut(s)	89, 275, 297, 429
TspRI	CASTG	2 cut(s)	151, 500
Tth111I	GACNNNGTC	1 cut(s)	41
XagI	CCTNNNNNAGG	1 cut(s)	432
XapI	RAATTY	1 cut(s)	76
XmiI	GTMKAC	2 cut(s)	9, 45
XspI	CTAG	2 cut(s)	137, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.