Rw1G040940

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004548
Physical Location & Seq
Forward (+)
68002630 .. 68002905
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G040940.1

Sequence Viewer

Length: 276 bp
ATGCACATGTCATCATGTATTGTGTGCATGAATAGCATGGAGGGCAGGGACGAGGTGAGAGAGCTGTGCAATTGTGAGCATGTTTTCCACAGAGACTGCCTGGATGCTTGGATCGGTCAGGCTCAGCTAACTTGTCCTCTTTGTAGATCTGAGCTACTAATACCCGCTTCTACTTCTGCTACTACTTCAAAGCATGATAAAGATGGAGGAAGAGATCCATGGAGGGCCGAGAGGATGATTTACTTGTTTGGTGAAGATATTTGCTTCACGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

91

Amino Acids

10.38

Weight (kDa)

5.19

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 3 - 49 7.5e-08 RING-H2 zinc finger domain
zf-RING_2 PF13639 5 - 49 9.8e-12 Ring finger domain
zf-C3HC4 PF00097 6 - 48 7.5e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 6 - 48 1.2e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 6 - 46 1.4e-06 RING-type zinc-finger
zf-RING_11 PF17123 6 - 34 2.3e-06 RING-like zinc finger
zf-RING_4 PF14570 6 - 51 5.1e-06 RING/Ubox like zinc-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 165
AclWI GGATC 2 cut(s) 119, 209
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 1 cut(s) 189
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 3 cut(s) 64, 127, 154
AluI AGCT 3 cut(s) 64, 127, 154
Alw26I GTCTC 1 cut(s) 87
AlwI GGATC 2 cut(s) 119, 209
AlwNI CAGNNNCTG 1 cut(s) 96
AoxI GGCC 1 cut(s) 225
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 2 cut(s) 67, 263
BccI CCATC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 1 cut(s) 274
BglII AGATCT 1 cut(s) 146
BlpI GCTNAGC 1 cut(s) 123
Bme1390I CCNGG 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 225
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 94
Bpu1102I GCTNAGC 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 2 cut(s) 109, 240
BseMII CTCAG 2 cut(s) 137, 141
BshFI GGCC 1 cut(s) 227
BslFI GGGAC 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 62
BsnI GGCC 1 cut(s) 227
Bsp143I GATC 4 cut(s) 111, 146, 214, 270
Bsp1720I GCTNAGC 1 cut(s) 123
Bsp19I CCATGG 1 cut(s) 218
BspACI CCGC 1 cut(s) 165
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 2 cut(s) 136, 142
BspPI GGATC 2 cut(s) 119, 209
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 4 cut(s) 111, 146, 214, 270
BssT1I CCWWGG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 101
Bst6I CTCTTC 1 cut(s) 205
BstDEI CTNAG 2 cut(s) 123, 150
BstDSI CCRYGG 1 cut(s) 218
BstF5I GGATG 2 cut(s) 109, 240
BstKTI GATC 4 cut(s) 114, 149, 217, 273
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 4 cut(s) 111, 146, 214, 270
BstMWI GCNNNNNNNGC 2 cut(s) 33, 42
BstNI CCWGG 1 cut(s) 101
BstNSI RCATGY 2 cut(s) 10, 83
BstSCI CCNGG 1 cut(s) 99
BstX2I RGATCY 2 cut(s) 146, 214
BstYI RGATCY 2 cut(s) 146, 214
BsuRI GGCC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 218
BtsCI GGATG 2 cut(s) 109, 240
CaiI CAGNNNCTG 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 225
CviAII CATG 7 cut(s) 7, 15, 28, 37, 80, 194, 219
CviJI RGCY 5 cut(s) 64, 122, 127, 154, 227
CviKI_1 RGCY 5 cut(s) 64, 122, 127, 154, 227
DdeI CTNAG 2 cut(s) 123, 150
DpnI GATC 4 cut(s) 113, 148, 216, 272
DpnII GATC 4 cut(s) 111, 146, 214, 270
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 218
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 7 cut(s) 10, 18, 31, 40, 83, 197, 222
FaiI YATR 7 cut(s) 8, 16, 29, 38, 81, 195, 220
FaqI GGGAC 1 cut(s) 62
FatI CATG 7 cut(s) 6, 14, 27, 36, 79, 193, 218
FauI CCCGC 1 cut(s) 172
FokI GGATG 2 cut(s) 116, 247
FspBI CTAG 1 cut(s) 274
HaeIII GGCC 1 cut(s) 227
Hin1II CATG 7 cut(s) 10, 18, 31, 40, 83, 197, 222
HphI GGTGA 2 cut(s) 67, 263
Hpy188I TCNGA 1 cut(s) 151
Hpy188III TCNNGA 1 cut(s) 268
HpyCH4V TGCA 3 cut(s) 4, 27, 69
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 42
HpyF3I CTNAG 2 cut(s) 123, 150
Hsp92II CATG 7 cut(s) 10, 18, 31, 40, 83, 197, 222
Kzo9I GATC 4 cut(s) 111, 146, 214, 270
LpnPI CCDG 4 cut(s) 31, 86, 104, 113
LweI GCATC 1 cut(s) 94
MaeI CTAG 1 cut(s) 274
MalI GATC 4 cut(s) 113, 148, 216, 272
MboI GATC 4 cut(s) 111, 146, 214, 270
MboII GAAGA 2 cut(s) 222, 266
MfeI CAATTG 1 cut(s) 70
MflI RGATCY 2 cut(s) 146, 214
MluCI AATT 1 cut(s) 70
MnlI CCTC 6 cut(s) 34, 46, 147, 200, 216, 225
MspR9I CCNGG 1 cut(s) 101
MunI CAATTG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 2 cut(s) 33, 42
NcoI CCATGG 1 cut(s) 218
NdeII GATC 4 cut(s) 111, 146, 214, 270
NlaIII CATG 7 cut(s) 10, 18, 31, 40, 83, 197, 222
NmeAIII GCCGAG 1 cut(s) 253
NspI RCATGY 2 cut(s) 10, 83
PciI ACATGT 1 cut(s) 6
PscI ACATGT 1 cut(s) 6
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspPI GGNCC 1 cut(s) 225
PstNI CAGNNNCTG 1 cut(s) 96
PsuI RGATCY 2 cut(s) 146, 214
Sau3AI GATC 4 cut(s) 111, 146, 214, 270
Sau96I GGNCC 1 cut(s) 225
ScrFI CCNGG 1 cut(s) 101
SetI ASST 4 cut(s) 57, 66, 129, 156
SfaNI GCATC 1 cut(s) 94
Sse9I AATT 1 cut(s) 70
SsiI CCGC 1 cut(s) 165
SspMI CTAG 1 cut(s) 274
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 218
TaqII GACCGA 1 cut(s) 104
TasI AATT 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 44
XceI RCATGY 2 cut(s) 10, 83
XspI CTAG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.