Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004548

Physical Location & Seq

Genomic Coordinates Reverse (-)

23582790 .. 23583889

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCTCAAGATGAAGTTGGGGTCGTTACTATGGGATCTTGTCAAACTTTTACTGAAGATGAGTTTGTACTATCCAGTACATAGCGGAGATGGTGAACAAGATAAGGAGGATAGTGATCGTCAGCCGGAATATGAAGCTGCAGCAACTACTTCAGATCTTACTCGGTACGACTTGCAAGTACCAGTAGTAGTTCCGGTGGTGATTGACACAGAATCGATCAAGAAGCAACTGCCGGTTGTGCAATACCGGGACCTAATGCTGAGGAAAACGAGCCGCCAGCGCCAATTGCAAGCTATATCTTCGTCTTCGTATCCGGAGGAAGAAATATTGCACGTTTCATCATGTATTGTGTGCATGAATGTCATAGAGGGCAGTGACGAGGTGAGGGAGCTGTGCAATTGTGAGCATGTTTTCCACACAGACTGCCTGGATGCTTGGATCGGTCAGGCTCAGTTAACTTGTCCTCTGTGTAGATCCGAGCTACTAATACCAGCTACTACTTGTGGTACTATCTCAAAGCATGATAAAGATGGAGGAGGAGATCCATGGAGGGTCGAGAGGATGATTTACTTGTTTGGTCAAGATATTTGTTTCAAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

201

Amino Acids

22.71

Weight (kDa)

5.02

Isoelectric Point (pI)

57.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	114 - 158	2.9e-10	Ring finger domain
zf-C3HC4_2	PF13923	115 - 157	3.1e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	123 - 158	3.8e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32950 FvH4_7g32960
malus_domestica	MD01G1228600.v1.1 MD07G1299400.v1.1 MD07G1299500.v1.1 MD07G1299600.v1.1
prunus_persica	Prupe.2G319200_v2.0.a1 Prupe.2G319300_v2.0.a1 Prupe.2G319400_v2.0.a1
pyrus_communis	pycom07g27170
rosa_chinensis	RchiOBHm_Chr1g0382911 RchiOBHm_Chr1g0382921
rosa_laevigata	RLG00000026149
rosa_multiflora	Rmu_co8270753.1_g000001 Rmu_co8320179.1_g000001 Rmu_sc0001785.1_g000002 Rmu_sc0010366.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277780
rosa_samantha	Rh1AG462300 Rh1AG462400 Rh1AG462500 Rh1AG462600 Rh1BG419300 Rh1BG419400 Rh1CG433000 Rh1CG433100 Rh1CG433200 Rh1CG433400 Rh1DG451400 Rh1DG451500
rosa_wichuraiana	Rw1G040940 Rw1G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	2 cut(s)	84, 274
AclWI	GGATC	4 cut(s)	42, 446, 468, 536
AcuI	CTGAAG	2 cut(s)	74, 135
AfaI	GTAC	5 cut(s)	68, 78, 167, 180, 508
AgsI	TTSAA	1 cut(s)	595
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	5 cut(s)	137, 293, 391, 481, 494
AluI	AGCT	5 cut(s)	137, 293, 391, 481, 494
AlwI	GGATC	4 cut(s)	42, 446, 468, 536
Aor13HI	TCCGGA	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	137, 140
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	250
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	3 cut(s)	104, 211, 394
AvaII	GGWCC	1 cut(s)	250
BbsI	GAAGAC	1 cut(s)	297
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	124, 152
BccI	CCATC	2 cut(s)	83, 524
BciT130I	CCWGG	1 cut(s)	428
BciVI	GTATCC	1 cut(s)	321
BcnI	CCSGG	1 cut(s)	248
BfaI	CTAG	1 cut(s)	601
BfmI	CTRYAG	1 cut(s)	138
BfoI	RGCGCY	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	321
BglII	AGATCT	1 cut(s)	154
BisI	GCNGC	3 cut(s)	138, 141, 274
BlsI	GCNGC	3 cut(s)	139, 142, 275
Bme1390I	CCNGG	2 cut(s)	248, 428
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	251
BmrFI	CCNGG	2 cut(s)	248, 428
BmsI	GCATC	1 cut(s)	421
BpiI	GAAGAC	1 cut(s)	297
Bpu10I	CCTNAGC	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	248
Bsa29I	ATCGAT	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	545
BsaWI	WCCGGW	2 cut(s)	193, 313
Bse118I	RCCGGY	1 cut(s)	232
Bse1I	ACTGG	2 cut(s)	74, 182
Bse8I	GATNNNNATC	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	428
BseCI	ATCGAT	1 cut(s)	215
BseDI	CCNNGG	1 cut(s)	545
BseGI	GGATG	2 cut(s)	436, 567
BseJI	GATNNNNATC	1 cut(s)	114
BseMII	CTCAG	2 cut(s)	251, 464
BseNI	ACTGG	2 cut(s)	74, 182
BseRI	GAGGAG	2 cut(s)	549, 552
BseXI	GCAGC	2 cut(s)	124, 152
BshVI	ATCGAT	1 cut(s)	215
BsiSI	CCGG	5 cut(s)	125, 194, 233, 247, 314
BslFI	GGGAC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	263
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	7 cut(s)	34, 115, 154, 216, 438, 473, 541
Bsp19I	CCATGG	1 cut(s)	545
BspACI	CCGC	2 cut(s)	84, 274
BspCNI	CTCAG	2 cut(s)	252, 463
BspDI	ATCGAT	1 cut(s)	215
BspEI	TCCGGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	251
BspMAI	CTGCAG	1 cut(s)	142
BspPI	GGATC	4 cut(s)	42, 446, 468, 536
BsrFI	RCCGGY	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	74, 182
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	545
BssMI	GATC	7 cut(s)	34, 115, 154, 216, 438, 473, 541
BssT1I	CCWWGG	1 cut(s)	545
Bst2UI	CCWGG	1 cut(s)	428
BstC8I	GCNNGC	2 cut(s)	278, 291
BstDEI	CTNAG	2 cut(s)	260, 450
BstDSI	CCRYGG	1 cut(s)	545
BstF5I	GGATG	2 cut(s)	436, 567
BstH2I	RGCGCY	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	7 cut(s)	37, 118, 157, 219, 441, 476, 544
BstMBI	GATC	7 cut(s)	34, 115, 154, 216, 438, 473, 541
BstMWI	GCNNNNNNNGC	3 cut(s)	238, 279, 286
BstNI	CCWGG	1 cut(s)	428
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	246, 426
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	124, 152
BstV2I	GAAGAC	1 cut(s)	297
BstX2I	RGATCY	4 cut(s)	34, 154, 473, 541
BstYI	RGATCY	4 cut(s)	34, 154, 473, 541
Bsu15I	ATCGAT	1 cut(s)	215
BsuI	GTATCC	1 cut(s)	321
BsuTUI	ATCGAT	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	545
BtsCI	GGATG	2 cut(s)	436, 567
BtsI	GCAGTG	1 cut(s)	379
BtsIMutI	CAGTG	1 cut(s)	379
Cac8I	GCNNGC	2 cut(s)	278, 291
CfoI	GCGC	1 cut(s)	282
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	250
ClaI	ATCGAT	1 cut(s)	215
Csp6I	GTAC	5 cut(s)	67, 77, 166, 179, 507
CviAII	CATG	5 cut(s)	342, 355, 407, 521, 546
CviJI	RGCY	8 cut(s)	124, 137, 273, 293, 391, 449, 481, 494
CviKI_1	RGCY	8 cut(s)	124, 137, 273, 293, 391, 449, 481, 494
CviQI	GTAC	5 cut(s)	67, 77, 166, 179, 507
DdeI	CTNAG	2 cut(s)	260, 450
DpnI	GATC	7 cut(s)	36, 117, 156, 218, 440, 475, 543
DpnII	GATC	7 cut(s)	34, 115, 154, 216, 438, 473, 541
Eco130I	CCWWGG	1 cut(s)	545
Eco47I	GGWCC	1 cut(s)	250
Eco57I	CTGAAG	2 cut(s)	74, 135
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	545
ErhI	CCWWGG	1 cut(s)	545
FaeI	CATG	5 cut(s)	345, 358, 410, 524, 549
FaqI	GGGAC	1 cut(s)	263
FatI	CATG	5 cut(s)	341, 354, 406, 520, 545
Fnu4HI	GCNGC	3 cut(s)	138, 141, 274
FokI	GGATG	2 cut(s)	443, 574
Fsp4HI	GCNGC	3 cut(s)	138, 141, 274
FspBI	CTAG	1 cut(s)	601
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	3 cut(s)	138, 141, 274
HaeII	RGCGCY	1 cut(s)	283
HapII	CCGG	5 cut(s)	125, 194, 233, 247, 314
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	5 cut(s)	345, 358, 410, 524, 549
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HincII	GTYRAC	1 cut(s)	456
HindII	GTYRAC	1 cut(s)	456
HinfI	GANTC	1 cut(s)	212
HpaI	GTTAAC	1 cut(s)	456
HpaII	CCGG	5 cut(s)	125, 194, 233, 247, 314
HphI	GGTGA	3 cut(s)	104, 211, 394
Hpy166II	GTNNAC	2 cut(s)	95, 456
Hpy188I	TCNGA	2 cut(s)	154, 478
Hpy188III	TCNNGA	6 cut(s)	7, 220, 314, 556, 581, 595
Hpy8I	GTNNAC	2 cut(s)	95, 456
HpyCH4IV	ACGT	1 cut(s)	333
HpyCH4V	TGCA	7 cut(s)	140, 175, 241, 289, 331, 354, 396
HpyF10VI	GCNNNNNNNGC	3 cut(s)	238, 279, 286
HpyF3I	CTNAG	2 cut(s)	260, 450
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	5 cut(s)	345, 358, 410, 524, 549
HspAI	GCGC	1 cut(s)	280
Kpn2I	TCCGGA	1 cut(s)	313
KspAI	GTTAAC	1 cut(s)	456
Kzo9I	GATC	7 cut(s)	34, 115, 154, 216, 438, 473, 541
LmnI	GCTCC	1 cut(s)	388
Lsp1109I	GCAGC	2 cut(s)	124, 152
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	1 cut(s)	601
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	2 cut(s)	24, 374
MalI	GATC	7 cut(s)	36, 117, 156, 218, 440, 475, 543
MboI	GATC	7 cut(s)	34, 115, 154, 216, 438, 473, 541
MboII	GAAGA	4 cut(s)	67, 291, 297, 332
MfeI	CAATTG	2 cut(s)	284, 397
MflI	RGATCY	4 cut(s)	34, 154, 473, 541
MluCI	AATT	2 cut(s)	284, 397
MroI	TCCGGA	1 cut(s)	313
MseI	TTAA	1 cut(s)	455
MspI	CCGG	5 cut(s)	125, 194, 233, 247, 314
MspR9I	CCNGG	2 cut(s)	248, 428
MunI	CAATTG	2 cut(s)	284, 397
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	3 cut(s)	238, 279, 286
NciI	CCSGG	1 cut(s)	248
NcoI	CCATGG	1 cut(s)	545
NdeII	GATC	7 cut(s)	34, 115, 154, 216, 438, 473, 541
NlaIII	CATG	5 cut(s)	345, 358, 410, 524, 549
NlaIV	GGNNCC	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	374
NspI	RCATGY	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	139, 142, 275
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	250
PspPPI	RGGWCCY	1 cut(s)	250
PstI	CTGCAG	1 cut(s)	142
PsuI	RGATCY	4 cut(s)	34, 154, 473, 541
RsaI	GTAC	5 cut(s)	68, 78, 167, 180, 508
RsaNI	GTAC	5 cut(s)	67, 77, 166, 179, 507
SaqAI	TTAA	1 cut(s)	455
SatI	GCNGC	3 cut(s)	138, 141, 274
Sau3AI	GATC	7 cut(s)	34, 115, 154, 216, 438, 473, 541
Sau96I	GGNCC	1 cut(s)	250
ScrFI	CCNGG	2 cut(s)	248, 428
SetI	ASST	8 cut(s)	139, 255, 295, 336, 384, 393, 483, 496
SfaNI	GCATC	1 cut(s)	421
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	250
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	2 cut(s)	284, 397
SsiI	CCGC	2 cut(s)	84, 274
SspI	AATATT	1 cut(s)	327
SspMI	CTAG	1 cut(s)	601
StyD4I	CCNGG	2 cut(s)	246, 426
StyI	CCWWGG	1 cut(s)	545
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	2 cut(s)	215, 555
TaqII	GACCGA	1 cut(s)	431
TasI	AATT	2 cut(s)	284, 397
TatI	WGTACW	2 cut(s)	66, 76
TauI	GCSGC	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	455
Tru9I	TTAA	1 cut(s)	455
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	2 cut(s)	137, 140
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	4 cut(s)	26, 147, 327, 371
TspRI	CASTG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	250
XceI	RCATGY	1 cut(s)	410
XspI	CTAG	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.