Rh1DG451500

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0004548
Physical Location & Seq
Reverse (-)
65921578 .. 65923195
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG451500.1

Sequence Viewer

Length: 660 bp
ATGCGTGCTTCTTTCTGTAATTGTGATATAATCCAGCGAATAAGAAGCATGCTCAAGATGAAGTTGATGTTGTTGCTGTGTGATCTTCTCAAACTTCTGCTCGAGAAGATCATCTACTATCCAGAATCATTCCTCAGACACAGTGAAGATGATCAACAAAGTAAGGAAGATAGTGATCATCAGCTGGAGGTCATGAACTTTGAAGCTGCAGCAACTTCAGATCCTACTTGGTTGCACATGCAAGTACCAGTGGTTCCGGTGGTAAATATTGACACAGAATTCATTAAGAAGCAACTACCGGTTGTGCTATACCGGGACCTAATTCTGAAGAAAACAAGCTGCCAACGCCAATTTCAAGCTACATCATCATTTTCGGAGCAGGAAATGCACATGTCATCATGTATTGTGTGCATGAATAGCATGGAGGGCAGGGACGAGGTGAGAGAGCTGTGCAATTGTGAGCATGTTTTCCACAGAGACTGCCTGGATGCTTGGATCGGTCAGGCTCAGCTAACTTGTCCTCTTTGTAGATCTGAGCTACTAATACCCGCTTCTACTTCTGCTACTACTTCAAAGCATGATAAAGATGGAGGAAGAGATCCATGGAGGGCCGAGAGGATGATTTACTTGTTTGGTGAAGATATTTGCTTCACGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

219

Amino Acids

25.39

Weight (kDa)

5.38

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 130 - 177 6.7e-08 RING-H2 zinc finger domain
zf-RING_2 PF13639 133 - 177 5.9e-11 Ring finger domain
zf-C3HC4 PF00097 134 - 176 4.3e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 134 - 176 6.8e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 134 - 162 1e-05 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 549
AclWI GGATC 3 cut(s) 215, 503, 593
AcsI RAATTY 1 cut(s) 278
AcuI CTGAAG 2 cut(s) 201, 347
AfaI GTAC 1 cut(s) 246
AflIII ACRYGT 1 cut(s) 390
AgeI ACCGGT 1 cut(s) 298
AgsI TTSAA 3 cut(s) 203, 356, 573
AjnI CCWGG 1 cut(s) 483
AjuI GAANNNNNNNTTGG 2 cut(s) 336, 368
AluBI AGCT 7 cut(s) 184, 206, 339, 359, 448, 511, 538
AluI AGCT 7 cut(s) 184, 206, 339, 359, 448, 511, 538
Alw26I GTCTC 1 cut(s) 471
AlwI GGATC 3 cut(s) 215, 503, 593
AlwNI CAGNNNCTG 1 cut(s) 480
Ama87I CYCGRG 1 cut(s) 101
AoxI GGCC 1 cut(s) 609
ApeKI GCWGC 3 cut(s) 206, 209, 339
ApoI RAATTY 1 cut(s) 278
AsiGI ACCGGT 1 cut(s) 298
AspS9I GGNCC 2 cut(s) 316, 609
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 2 cut(s) 451, 647
AvaI CYCGRG 1 cut(s) 101
AvaII GGWCC 1 cut(s) 316
BarI GAAGNNNNNNTAC 2 cut(s) 98, 130
BbvI GCAGC 3 cut(s) 193, 221, 326
BccI CCATC 1 cut(s) 581
BciT130I CCWGG 1 cut(s) 485
BclI TGATCA 2 cut(s) 151, 175
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 1 cut(s) 471
BfaI CTAG 1 cut(s) 658
BfmI CTRYAG 1 cut(s) 207
BglII AGATCT 1 cut(s) 530
BisI GCNGC 3 cut(s) 207, 210, 340
BlpI GCTNAGC 1 cut(s) 507
BlsI GCNGC 3 cut(s) 208, 211, 341
Bme1390I CCNGG 2 cut(s) 314, 485
Bme18I GGWCC 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 101
BmgT120I GGNCC 2 cut(s) 316, 609
BmiI GGNNCC 2 cut(s) 255, 317
BmrFI CCNGG 2 cut(s) 314, 485
BmsI GCATC 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 206
Bpu1102I GCTNAGC 1 cut(s) 507
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 314
BsaBI GATNNNNATC 1 cut(s) 174
BsaJI CCNNGG 1 cut(s) 602
BsaWI WCCGGW 2 cut(s) 256, 298
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 1 cut(s) 248
Bse8I GATNNNNATC 1 cut(s) 174
BseBI CCWGG 1 cut(s) 485
BseDI CCNNGG 1 cut(s) 602
BseGI GGATG 2 cut(s) 493, 624
BseJI GATNNNNATC 1 cut(s) 174
BseMII CTCAG 3 cut(s) 148, 521, 525
BseNI ACTGG 1 cut(s) 248
BseXI GCAGC 3 cut(s) 193, 221, 326
BshFI GGCC 1 cut(s) 611
BshTI ACCGGT 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 101
BsiSI CCGG 3 cut(s) 257, 299, 313
BslFI GGGAC 2 cut(s) 329, 446
BsmAI GTCTC 1 cut(s) 471
BsmFI GGGAC 2 cut(s) 329, 446
BsnI GGCC 1 cut(s) 611
BsoBI CYCGRG 1 cut(s) 101
Bsp143I GATC 9 cut(s) 82, 108, 151, 175, 220, 495, 530, 598, 654
Bsp1720I GCTNAGC 1 cut(s) 507
Bsp19I CCATGG 1 cut(s) 602
BspACI CCGC 1 cut(s) 549
BspANI GGCC 1 cut(s) 611
BspCNI CTCAG 3 cut(s) 147, 520, 526
BspHI TCATGA 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 255, 317
BspMAI CTGCAG 1 cut(s) 211
BspPI GGATC 3 cut(s) 215, 503, 593
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 1 cut(s) 248
BssAI RCCGGY 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 602
BssMI GATC 9 cut(s) 82, 108, 151, 175, 220, 495, 530, 598, 654
BssT1I CCWWGG 1 cut(s) 602
Bst2UI CCWGG 1 cut(s) 485
Bst4CI ACNGT 1 cut(s) 143
Bst6I CTCTTC 1 cut(s) 589
BstAPI GCANNNNNTGC 1 cut(s) 385
BstC8I GCNNGC 2 cut(s) 6, 50
BstDEI CTNAG 3 cut(s) 134, 507, 534
BstDSI CCRYGG 1 cut(s) 602
BstF5I GGATG 2 cut(s) 493, 624
BstKTI GATC 9 cut(s) 85, 111, 154, 178, 223, 498, 533, 601, 657
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 9 cut(s) 82, 108, 151, 175, 220, 495, 530, 598, 654
BstMWI GCNNNNNNNGC 4 cut(s) 345, 385, 417, 426
BstNI CCWGG 1 cut(s) 485
BstNSI RCATGY 4 cut(s) 52, 241, 394, 467
BstSCI CCNGG 2 cut(s) 312, 483
BstSFI CTRYAG 1 cut(s) 207
BstV1I GCAGC 3 cut(s) 193, 221, 326
BstX2I RGATCY 3 cut(s) 220, 530, 598
BstYI RGATCY 3 cut(s) 220, 530, 598
BsuRI GGCC 1 cut(s) 611
BtgI CCRYGG 1 cut(s) 602
BtsCI GGATG 2 cut(s) 493, 624
BtsIMutI CAGTG 2 cut(s) 148, 255
Cac8I GCNNGC 2 cut(s) 6, 50
CaiI CAGNNNCTG 1 cut(s) 480
CciI TCATGA 1 cut(s) 192
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 2 cut(s) 316, 609
Csp6I GTAC 1 cut(s) 245
CspAI ACCGGT 1 cut(s) 298
CviJI RGCY 9 cut(s) 184, 206, 339, 359, 448, 506, 511, 538, 611
CviKI_1 RGCY 9 cut(s) 184, 206, 339, 359, 448, 506, 511, 538, 611
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 3 cut(s) 134, 507, 534
DpnI GATC 9 cut(s) 84, 110, 153, 177, 222, 497, 532, 600, 656
DpnII GATC 9 cut(s) 82, 108, 151, 175, 220, 495, 530, 598, 654
Eam1104I CTCTTC 1 cut(s) 589
EarI CTCTTC 1 cut(s) 589
Eco130I CCWWGG 1 cut(s) 602
Eco47I GGWCC 1 cut(s) 316
Eco57I CTGAAG 2 cut(s) 201, 347
Eco88I CYCGRG 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 316
EcoRI GAATTC 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 483
EcoT14I CCWWGG 1 cut(s) 602
ErhI CCWWGG 1 cut(s) 602
FaqI GGGAC 2 cut(s) 329, 446
FauI CCCGC 1 cut(s) 556
FbaI TGATCA 2 cut(s) 151, 175
Fnu4HI GCNGC 3 cut(s) 207, 210, 340
FokI GGATG 2 cut(s) 500, 631
Fsp4HI GCNGC 3 cut(s) 207, 210, 340
FspBI CTAG 1 cut(s) 658
GluI GCNGC 3 cut(s) 207, 210, 340
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 1 cut(s) 611
HapII CCGG 3 cut(s) 257, 299, 313
HinfI GANTC 1 cut(s) 125
HpaII CCGG 3 cut(s) 257, 299, 313
HphI GGTGA 2 cut(s) 451, 647
Hpy188I TCNGA 5 cut(s) 137, 220, 327, 376, 535
Hpy188III TCNNGA 5 cut(s) 55, 103, 122, 193, 652
HpyCH4III ACNGT 1 cut(s) 143
HpyCH4V TGCA 6 cut(s) 209, 235, 241, 388, 411, 453
HpyF10VI GCNNNNNNNGC 4 cut(s) 345, 385, 417, 426
HpyF3I CTNAG 3 cut(s) 134, 507, 534
Ksp22I TGATCA 2 cut(s) 151, 175
Kzo9I GATC 9 cut(s) 82, 108, 151, 175, 220, 495, 530, 598, 654
LmnI GCTCC 1 cut(s) 376
Lsp1109I GCAGC 3 cut(s) 193, 221, 326
LweI GCATC 1 cut(s) 478
MaeI CTAG 1 cut(s) 658
MalI GATC 9 cut(s) 84, 110, 153, 177, 222, 497, 532, 600, 656
MboI GATC 9 cut(s) 82, 108, 151, 175, 220, 495, 530, 598, 654
MboII GAAGA 7 cut(s) 77, 118, 158, 179, 340, 606, 650
MfeI CAATTG 1 cut(s) 454
MflI RGATCY 3 cut(s) 220, 530, 598
MluCI AATT 5 cut(s) 19, 278, 321, 350, 454
MnlI CCTC 8 cut(s) 143, 181, 418, 430, 531, 584, 600, 609
MseI TTAA 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 184
MspI CCGG 3 cut(s) 257, 299, 313
MspR9I CCNGG 2 cut(s) 314, 485
MunI CAATTG 1 cut(s) 454
MvaI CCWGG 1 cut(s) 485
MwoI GCNNNNNNNGC 4 cut(s) 345, 385, 417, 426
NciI CCSGG 1 cut(s) 314
NcoI CCATGG 1 cut(s) 602
NdeII GATC 9 cut(s) 82, 108, 151, 175, 220, 495, 530, 598, 654
NlaIV GGNNCC 2 cut(s) 255, 317
NmeAIII GCCGAG 1 cut(s) 637
NspI RCATGY 4 cut(s) 52, 241, 394, 467
PaeI GCATGC 1 cut(s) 52
PaeR7I CTCGAG 1 cut(s) 101
PagI TCATGA 1 cut(s) 192
PciI ACATGT 1 cut(s) 390
PfeI GAWTC 1 cut(s) 125
PinAI ACCGGT 1 cut(s) 298
PkrI GCNGC 3 cut(s) 208, 211, 341
PpuMI RGGWCCY 1 cut(s) 316
PscI ACATGT 1 cut(s) 390
Psp5II RGGWCCY 1 cut(s) 316
Psp6I CCWGG 1 cut(s) 483
PspGI CCWGG 1 cut(s) 483
PspN4I GGNNCC 2 cut(s) 255, 317
PspPI GGNCC 2 cut(s) 316, 609
PspPPI RGGWCCY 1 cut(s) 316
PsrI GAACNNNNNNTAC 2 cut(s) 237, 269
PstI CTGCAG 1 cut(s) 211
PstNI CAGNNNCTG 1 cut(s) 480
PsuI RGATCY 3 cut(s) 220, 530, 598
PvuII CAGCTG 1 cut(s) 184
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 3 cut(s) 207, 210, 340
Sau3AI GATC 9 cut(s) 82, 108, 151, 175, 220, 495, 530, 598, 654
Sau96I GGNCC 2 cut(s) 316, 609
ScrFI CCNGG 2 cut(s) 314, 485
SfaNI GCATC 1 cut(s) 478
SfcI CTRYAG 1 cut(s) 207
Sfr274I CTCGAG 1 cut(s) 101
SinI GGWCC 1 cut(s) 316
SlaI CTCGAG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 53, 101
SmoI CTYRAG 2 cut(s) 53, 101
SphI GCATGC 1 cut(s) 52
Sse9I AATT 5 cut(s) 19, 278, 321, 350, 454
SsiI CCGC 1 cut(s) 549
SspI AATATT 1 cut(s) 268
SspMI CTAG 1 cut(s) 658
StyD4I CCNGG 2 cut(s) 312, 483
StyI CCWWGG 1 cut(s) 602
TaaI ACNGT 1 cut(s) 143
TaqI TCGA 1 cut(s) 102
TaqII GACCGA 1 cut(s) 488
TasI AATT 5 cut(s) 19, 278, 321, 350, 454
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 2 cut(s) 148, 255
TseI GCWGC 3 cut(s) 206, 209, 339
TspDTI ATGAA 4 cut(s) 74, 209, 271, 428
TspRI CASTG 2 cut(s) 148, 255
VpaK11BI GGWCC 1 cut(s) 316
XapI RAATTY 1 cut(s) 278
XceI RCATGY 4 cut(s) 52, 241, 394, 467
XhoI CTCGAG 1 cut(s) 101
XspI CTAG 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.