Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8320179.1

Orthogroup ID

OG0004548

Physical Location & Seq

Genomic Coordinates Forward (+)

251 .. 874

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8320179.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atgctcaagatgaagttgatgttgttgctgtgtgatcttctcaaacttctgctcgagaagatcatctactatccagaatcattccttagacacagtgaagatgatcaacaaagtaaggacgatagtgatcatcagctggaggtcatgaactttgaagttgcattaacttcagatcctacttggttgcacatgcaagtaccagtggttccggtggtaaatattgacacagaattcattaagaagcaactaccggttgtgctataccgggacctaattctgaagaaaacaagccgccaacgccaatttcaagctacatcatcagcgttatcatcattttcggagcaggaaatgcacatgtcatcatgtattgtgtgcatgaatagcatggagggcagggacgaggtgagagagctgtgcaattgtgagcatgttttccacagagactgcctggatgcttggatcggtcaggctcagctaacttgtcctctttgtagatctgagctactaatacccgcttctacttctgctactacttcaaagcatgacaaagatggaggaagagatccatggagggccgagaggatgatttacttgtttggtgacgatatttgcttcacgatctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

207

Amino Acids

23.95

Weight (kDa)

5.23

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32950 FvH4_7g32960
malus_domestica	MD01G1228600.v1.1 MD07G1299400.v1.1 MD07G1299500.v1.1 MD07G1299600.v1.1
prunus_persica	Prupe.2G319200_v2.0.a1 Prupe.2G319300_v2.0.a1 Prupe.2G319400_v2.0.a1
pyrus_communis	pycom07g27170
rosa_chinensis	RchiOBHm_Chr1g0382911 RchiOBHm_Chr1g0382921
rosa_laevigata	RLG00000026149
rosa_multiflora	Rmu_co8270753.1_g000001 Rmu_co8320179.1_g000001 Rmu_sc0001785.1_g000002 Rmu_sc0010366.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277780
rosa_samantha	Rh1AG462300 Rh1AG462400 Rh1AG462500 Rh1AG462600 Rh1BG419300 Rh1BG419400 Rh1CG433000 Rh1CG433100 Rh1CG433200 Rh1CG433400 Rh1DG451400 Rh1DG451500
rosa_wichuraiana	Rw1G040940 Rw1G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	292, 513
AclWI	GGATC	3 cut(s)	167, 467, 557
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	2 cut(s)	153, 299
AfaI	GTAC	1 cut(s)	198
AflIII	ACRYGT	1 cut(s)	354
AgeI	ACCGGT	1 cut(s)	250
AgsI	TTSAA	3 cut(s)	155, 308, 537
AjnI	CCWGG	1 cut(s)	447
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	5 cut(s)	136, 311, 412, 475, 502
AluI	AGCT	5 cut(s)	136, 311, 412, 475, 502
Alw26I	GTCTC	1 cut(s)	435
AlwI	GGATC	3 cut(s)	167, 467, 557
AlwNI	CAGNNNCTG	1 cut(s)	444
Ama87I	CYCGRG	1 cut(s)	53
AoxI	GGCC	1 cut(s)	573
ApoI	RAATTY	1 cut(s)	230
AsiGI	ACCGGT	1 cut(s)	250
AspS9I	GGNCC	2 cut(s)	268, 573
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	415, 611
AvaI	CYCGRG	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	268
BarI	GAAGNNNNNNTAC	2 cut(s)	50, 82
BccI	CCATC	1 cut(s)	545
BciT130I	CCWGG	1 cut(s)	449
BclI	TGATCA	2 cut(s)	103, 127
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	435
BfaI	CTAG	1 cut(s)	622
BglII	AGATCT	1 cut(s)	494
BisI	GCNGC	1 cut(s)	292
BlpI	GCTNAGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	293
Bme1390I	CCNGG	2 cut(s)	266, 449
Bme18I	GGWCC	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	53
BmgT120I	GGNCC	2 cut(s)	268, 573
BmiI	GGNNCC	2 cut(s)	207, 269
BmrFI	CCNGG	2 cut(s)	266, 449
BmsI	GCATC	1 cut(s)	442
BpmI	CTGGAG	1 cut(s)	158
Bpu1102I	GCTNAGC	1 cut(s)	471
BpuMI	CCSGG	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	566
BsaWI	WCCGGW	2 cut(s)	208, 250
Bse118I	RCCGGY	1 cut(s)	250
Bse1I	ACTGG	1 cut(s)	200
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	449
BseDI	CCNNGG	1 cut(s)	566
BseGI	GGATG	2 cut(s)	457, 588
BseJI	GATNNNNATC	1 cut(s)	126
BseMII	CTCAG	2 cut(s)	485, 489
BseNI	ACTGG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	575
BshTI	ACCGGT	1 cut(s)	250
BsiHKCI	CYCGRG	1 cut(s)	53
BsiSI	CCGG	3 cut(s)	209, 251, 265
BslFI	GGGAC	2 cut(s)	281, 410
BsmAI	GTCTC	1 cut(s)	435
BsmFI	GGGAC	2 cut(s)	281, 410
BsnI	GGCC	1 cut(s)	575
BsoBI	CYCGRG	1 cut(s)	53
Bsp143I	GATC	9 cut(s)	34, 60, 103, 127, 172, 459, 494, 562, 618
Bsp1720I	GCTNAGC	1 cut(s)	471
Bsp19I	CCATGG	1 cut(s)	566
BspACI	CCGC	2 cut(s)	292, 513
BspANI	GGCC	1 cut(s)	575
BspCNI	CTCAG	2 cut(s)	484, 490
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	2 cut(s)	207, 269
BspPI	GGATC	3 cut(s)	167, 467, 557
BsrFI	RCCGGY	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	566
BssMI	GATC	9 cut(s)	34, 60, 103, 127, 172, 459, 494, 562, 618
BssT1I	CCWWGG	1 cut(s)	566
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	1 cut(s)	553
BstAPI	GCANNNNNTGC	1 cut(s)	349
BstDEI	CTNAG	3 cut(s)	86, 471, 498
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	2 cut(s)	457, 588
BstKTI	GATC	9 cut(s)	37, 63, 106, 130, 175, 462, 497, 565, 621
BstMAI	GTCTC	1 cut(s)	435
BstMBI	GATC	9 cut(s)	34, 60, 103, 127, 172, 459, 494, 562, 618
BstMWI	GCNNNNNNNGC	4 cut(s)	297, 349, 381, 390
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	3 cut(s)	193, 358, 431
BstSCI	CCNGG	2 cut(s)	264, 447
BstX2I	RGATCY	3 cut(s)	172, 494, 562
BstYI	RGATCY	3 cut(s)	172, 494, 562
BsuRI	GGCC	1 cut(s)	575
BtgI	CCRYGG	1 cut(s)	566
BtsCI	GGATG	2 cut(s)	457, 588
BtsIMutI	CAGTG	2 cut(s)	100, 207
CaiI	CAGNNNCTG	1 cut(s)	444
CciI	TCATGA	1 cut(s)	144
Cfr10I	RCCGGY	1 cut(s)	250
Cfr13I	GGNCC	2 cut(s)	268, 573
Csp6I	GTAC	1 cut(s)	197
CspAI	ACCGGT	1 cut(s)	250
CviAII	CATG	9 cut(s)	145, 190, 355, 363, 376, 385, 428, 542, 567
CviJI	RGCY	8 cut(s)	136, 291, 311, 412, 470, 475, 502, 575
CviKI_1	RGCY	8 cut(s)	136, 291, 311, 412, 470, 475, 502, 575
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	3 cut(s)	86, 471, 498
DpnI	GATC	9 cut(s)	36, 62, 105, 129, 174, 461, 496, 564, 620
DpnII	GATC	9 cut(s)	34, 60, 103, 127, 172, 459, 494, 562, 618
Eam1104I	CTCTTC	1 cut(s)	553
EarI	CTCTTC	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	566
Eco47I	GGWCC	1 cut(s)	268
Eco57I	CTGAAG	2 cut(s)	153, 299
Eco88I	CYCGRG	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	566
ErhI	CCWWGG	1 cut(s)	566
FaeI	CATG	9 cut(s)	148, 193, 358, 366, 379, 388, 431, 545, 570
FaqI	GGGAC	2 cut(s)	281, 410
FatI	CATG	9 cut(s)	144, 189, 354, 362, 375, 384, 427, 541, 566
FauI	CCCGC	1 cut(s)	520
FbaI	TGATCA	2 cut(s)	103, 127
Fnu4HI	GCNGC	1 cut(s)	292
FokI	GGATG	2 cut(s)	464, 595
Fsp4HI	GCNGC	1 cut(s)	292
FspBI	CTAG	1 cut(s)	622
GluI	GCNGC	1 cut(s)	292
GsuI	CTGGAG	1 cut(s)	158
HaeIII	GGCC	1 cut(s)	575
HapII	CCGG	3 cut(s)	209, 251, 265
Hin1II	CATG	9 cut(s)	148, 193, 358, 366, 379, 388, 431, 545, 570
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	3 cut(s)	209, 251, 265
HphI	GGTGA	2 cut(s)	415, 611
Hpy188I	TCNGA	4 cut(s)	172, 279, 340, 499
Hpy188III	TCNNGA	5 cut(s)	7, 55, 74, 145, 616
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4V	TGCA	6 cut(s)	161, 187, 193, 352, 375, 417
HpyF10VI	GCNNNNNNNGC	4 cut(s)	297, 349, 381, 390
HpyF3I	CTNAG	3 cut(s)	86, 471, 498
Hsp92II	CATG	9 cut(s)	148, 193, 358, 366, 379, 388, 431, 545, 570
Ksp22I	TGATCA	2 cut(s)	103, 127
Kzo9I	GATC	9 cut(s)	34, 60, 103, 127, 172, 459, 494, 562, 618
LmnI	GCTCC	1 cut(s)	340
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	1 cut(s)	622
MaeIII	GTNAC	1 cut(s)	599
MalI	GATC	9 cut(s)	36, 62, 105, 129, 174, 461, 496, 564, 620
MboI	GATC	9 cut(s)	34, 60, 103, 127, 172, 459, 494, 562, 618
MboII	GAAGA	5 cut(s)	29, 70, 110, 292, 570
MfeI	CAATTG	1 cut(s)	418
MflI	RGATCY	3 cut(s)	172, 494, 562
MluCI	AATT	4 cut(s)	230, 273, 302, 418
MnlI	CCTC	7 cut(s)	133, 382, 394, 495, 548, 564, 573
MseI	TTAA	2 cut(s)	164, 237
MspA1I	CMGCKG	1 cut(s)	136
MspI	CCGG	3 cut(s)	209, 251, 265
MspR9I	CCNGG	2 cut(s)	266, 449
MunI	CAATTG	1 cut(s)	418
MvaI	CCWGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	4 cut(s)	297, 349, 381, 390
NciI	CCSGG	1 cut(s)	266
NcoI	CCATGG	1 cut(s)	566
NdeII	GATC	9 cut(s)	34, 60, 103, 127, 172, 459, 494, 562, 618
NlaIII	CATG	9 cut(s)	148, 193, 358, 366, 379, 388, 431, 545, 570
NlaIV	GGNNCC	2 cut(s)	207, 269
NmeAIII	GCCGAG	1 cut(s)	601
NmuCI	GTSAC	1 cut(s)	599
NspI	RCATGY	3 cut(s)	193, 358, 431
PaeR7I	CTCGAG	1 cut(s)	53
PagI	TCATGA	1 cut(s)	144
PciI	ACATGT	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	77
PinAI	ACCGGT	1 cut(s)	250
PkrI	GCNGC	1 cut(s)	293
PpuMI	RGGWCCY	1 cut(s)	268
PscI	ACATGT	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	2 cut(s)	207, 269
PspPI	GGNCC	2 cut(s)	268, 573
PspPPI	RGGWCCY	1 cut(s)	268
PsrI	GAACNNNNNNTAC	2 cut(s)	189, 221
PstNI	CAGNNNCTG	1 cut(s)	444
PsuI	RGATCY	3 cut(s)	172, 494, 562
PvuII	CAGCTG	1 cut(s)	136
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	164, 237
SatI	GCNGC	1 cut(s)	292
Sau3AI	GATC	9 cut(s)	34, 60, 103, 127, 172, 459, 494, 562, 618
Sau96I	GGNCC	2 cut(s)	268, 573
ScrFI	CCNGG	2 cut(s)	266, 449
SetI	ASST	8 cut(s)	138, 144, 273, 313, 405, 414, 477, 504
SfaNI	GCATC	1 cut(s)	442
Sfr274I	CTCGAG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	268
SlaI	CTCGAG	1 cut(s)	53
SmlI	CTYRAG	2 cut(s)	5, 53
SmoI	CTYRAG	2 cut(s)	5, 53
Sse9I	AATT	4 cut(s)	230, 273, 302, 418
SsiI	CCGC	2 cut(s)	292, 513
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	1 cut(s)	622
StyD4I	CCNGG	2 cut(s)	264, 447
StyI	CCWWGG	1 cut(s)	566
TaaI	ACNGT	1 cut(s)	95
TaqI	TCGA	1 cut(s)	54
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	4 cut(s)	230, 273, 302, 418
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	2 cut(s)	164, 237
Tru9I	TTAA	2 cut(s)	164, 237
TscAI	CASTG	2 cut(s)	100, 207
TseFI	GTSAC	1 cut(s)	599
Tsp45I	GTSAC	1 cut(s)	599
TspDTI	ATGAA	4 cut(s)	26, 161, 223, 392
TspRI	CASTG	2 cut(s)	100, 207
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	3 cut(s)	193, 358, 431
XhoI	CTCGAG	1 cut(s)	53
XspI	CTAG	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.