Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004548

Physical Location & Seq

Genomic Coordinates Reverse (-)

29805588 .. 29806118

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G319300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAAGCTACAGTACTCATCCAAACGCGGTCAATATCAAAAGGATAATTATATTCTTGATCATGATCATGATCACCGGCCTGAGATGAATAGTTTGCCAGCAGCAGCTACAGCTCCTTCGCCTTGGTGGTTGGTACCATTACCGGTCCACTGCATAGCTGAATCCGTGAAGAACCAACTGCCAGTGGTGCAATACTGGGACTTCCTCAAGATCAAAACAGGCCAACCAGAAGCAGAAGCAGAAGACTCCAATACCAATGATCATATGTGTATTGTGTGCATGAATAGCATGGAAGGTAGCCAAGGGGTCAGAAAACTCTGCAATTGTTCACATGCTTTTCACAAAGAGTGCTTAGATGTTTGGATCGACGAGGGTCACCTCACATGTCCTCTCTGTAGATCTGACCTATTGCCTAATTCCACTCCAAAATCAAATCATCATCATCACCATAAGGAGATGGGAGAATTTGGAGAGGATCCATGGAAGGCCGAGAGGATGATTTACTTGTTTGGTGAGGATGAGCTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

177

Amino Acids

20.24

Weight (kDa)

5.64

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32950 FvH4_7g32960
malus_domestica	MD01G1228600.v1.1 MD07G1299400.v1.1 MD07G1299500.v1.1 MD07G1299600.v1.1
prunus_persica	Prupe.2G319200_v2.0.a1 Prupe.2G319300_v2.0.a1 Prupe.2G319400_v2.0.a1
pyrus_communis	pycom07g27170
rosa_chinensis	RchiOBHm_Chr1g0382911 RchiOBHm_Chr1g0382921
rosa_laevigata	RLG00000026149
rosa_multiflora	Rmu_co8270753.1_g000001 Rmu_co8320179.1_g000001 Rmu_sc0001785.1_g000002 Rmu_sc0010366.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277780
rosa_samantha	Rh1AG462300 Rh1AG462400 Rh1AG462500 Rh1AG462600 Rh1BG419300 Rh1BG419400 Rh1CG433000 Rh1CG433100 Rh1CG433200 Rh1CG433400 Rh1DG451400 Rh1DG451500
rosa_wichuraiana	Rw1G040940 Rw1G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	133
AccB1I	GGYRCC	1 cut(s)	133
AccII	CGCG	1 cut(s)	27
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	3 cut(s)	371, 470, 483
AcsI	RAATTY	1 cut(s)	464
AfaI	GTAC	2 cut(s)	14, 135
AflIII	ACRYGT	1 cut(s)	383
AgeI	ACCGGT	1 cut(s)	142
AluBI	AGCT	5 cut(s)	7, 107, 113, 158, 523
AluI	AGCT	5 cut(s)	7, 107, 113, 158, 523
AlwI	GGATC	3 cut(s)	371, 470, 483
AoxI	GGCC	3 cut(s)	77, 220, 486
ApeKI	GCWGC	2 cut(s)	101, 104
ApoI	RAATTY	1 cut(s)	464
AsiGI	ACCGGT	1 cut(s)	142
Asp718I	GGTACC	1 cut(s)	133
AspS9I	GGNCC	1 cut(s)	145
AsuHPI	GGTGA	4 cut(s)	65, 368, 437, 524
AvaII	GGWCC	1 cut(s)	145
BamHI	GGATCC	1 cut(s)	475
BanI	GGYRCC	1 cut(s)	133
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	113, 116
BccI	CCATC	1 cut(s)	451
BclI	TGATCA	4 cut(s)	58, 64, 70, 259
BfmI	CTRYAG	3 cut(s)	8, 108, 394
BglII	AGATCT	1 cut(s)	398
BisI	GCNGC	2 cut(s)	102, 105
BlsI	GCNGC	2 cut(s)	103, 106
BmcAI	AGTACT	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	2 cut(s)	135, 477
BmrI	ACTGGG	1 cut(s)	205
BmuI	ACTGGG	1 cut(s)	205
BoxI	GACNNNNGTC	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	191
BsaBI	GATNNNNATC	2 cut(s)	63, 69
BsaJI	CCNNGG	3 cut(s)	122, 301, 479
BsaWI	WCCGGW	1 cut(s)	142
Bse118I	RCCGGY	2 cut(s)	75, 142
Bse1I	ACTGG	2 cut(s)	182, 200
Bse8I	GATNNNNATC	2 cut(s)	63, 69
BseDI	CCNNGG	3 cut(s)	122, 301, 479
BseGI	GGATG	3 cut(s)	17, 501, 523
BseJI	GATNNNNATC	2 cut(s)	63, 69
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	2 cut(s)	182, 200
BseXI	GCAGC	2 cut(s)	113, 116
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	3 cut(s)	79, 222, 488
BshNI	GGYRCC	1 cut(s)	133
BshTI	ACCGGT	1 cut(s)	142
BsiSI	CCGG	2 cut(s)	76, 143
BslFI	GGGAC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	3 cut(s)	79, 222, 488
Bsp143I	GATC	8 cut(s)	58, 64, 70, 210, 259, 363, 398, 475
Bsp19I	CCATGG	1 cut(s)	479
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	3 cut(s)	79, 222, 488
BspCNI	CTCAG	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	27
BspHI	TCATGA	2 cut(s)	61, 67
BspLI	GGNNCC	2 cut(s)	135, 477
BspPI	GGATC	3 cut(s)	371, 470, 483
BspT107I	GGYRCC	1 cut(s)	133
BsrFI	RCCGGY	2 cut(s)	75, 142
BsrI	ACTGG	2 cut(s)	182, 200
BssAI	RCCGGY	2 cut(s)	75, 142
BssECI	CCNNGG	3 cut(s)	122, 301, 479
BssMI	GATC	8 cut(s)	58, 64, 70, 210, 259, 363, 398, 475
BssT1I	CCWWGG	3 cut(s)	122, 301, 479
Bst4CI	ACNGT	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	99, 525
BstDEI	CTNAG	2 cut(s)	81, 352
BstDSI	CCRYGG	1 cut(s)	479
BstEII	GGTNACC	1 cut(s)	374
BstF5I	GGATG	3 cut(s)	17, 501, 523
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	8 cut(s)	61, 67, 73, 213, 262, 366, 401, 478
BstMBI	GATC	8 cut(s)	58, 64, 70, 210, 259, 363, 398, 475
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 187, 285
BstNSI	RCATGY	2 cut(s)	335, 387
BstPAI	GACNNNNGTC	1 cut(s)	372
BstPI	GGTNACC	1 cut(s)	374
BstSFI	CTRYAG	3 cut(s)	8, 108, 394
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	113, 116
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	2 cut(s)	398, 475
BstYI	RGATCY	2 cut(s)	398, 475
BsuRI	GGCC	3 cut(s)	79, 222, 488
BtgI	CCRYGG	1 cut(s)	479
BtsCI	GGATG	3 cut(s)	17, 501, 523
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	2 cut(s)	148, 189
Cac8I	GCNNGC	2 cut(s)	99, 525
CciI	TCATGA	2 cut(s)	61, 67
Cfr10I	RCCGGY	2 cut(s)	75, 142
Cfr13I	GGNCC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	13, 134
CspAI	ACCGGT	1 cut(s)	142
CviAII	CATG	7 cut(s)	62, 68, 280, 289, 332, 384, 480
CviJI	RGCY	9 cut(s)	7, 79, 107, 113, 158, 222, 300, 488, 523
CviKI_1	RGCY	9 cut(s)	7, 79, 107, 113, 158, 222, 300, 488, 523
CviQI	GTAC	2 cut(s)	13, 134
DdeI	CTNAG	2 cut(s)	81, 352
DpnI	GATC	8 cut(s)	60, 66, 72, 212, 261, 365, 400, 477
DpnII	GATC	8 cut(s)	58, 64, 70, 210, 259, 363, 398, 475
Eco130I	CCWWGG	3 cut(s)	122, 301, 479
Eco47I	GGWCC	1 cut(s)	145
Eco91I	GGTNACC	1 cut(s)	374
EcoO65I	GGTNACC	1 cut(s)	374
EcoT14I	CCWWGG	3 cut(s)	122, 301, 479
ErhI	CCWWGG	3 cut(s)	122, 301, 479
FaeI	CATG	7 cut(s)	65, 71, 283, 292, 335, 387, 483
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	7 cut(s)	61, 67, 279, 288, 331, 383, 479
FauNDI	CATATG	1 cut(s)	264
FbaI	TGATCA	4 cut(s)	58, 64, 70, 259
Fnu4HI	GCNGC	2 cut(s)	102, 105
FokI	GGATG	2 cut(s)	4, 508
Fsp4HI	GCNGC	2 cut(s)	102, 105
GluI	GCNGC	2 cut(s)	102, 105
HaeIII	GGCC	3 cut(s)	79, 222, 488
HapII	CCGG	2 cut(s)	76, 143
Hin1II	CATG	7 cut(s)	65, 71, 283, 292, 335, 387, 483
HinfI	GANTC	2 cut(s)	161, 245
HpaII	CCGG	2 cut(s)	76, 143
HphI	GGTGA	4 cut(s)	65, 368, 437, 524
Hpy166II	GTNNAC	2 cut(s)	148, 329
Hpy188I	TCNGA	2 cut(s)	311, 403
Hpy188III	TCNNGA	4 cut(s)	56, 62, 68, 208
Hpy8I	GTNNAC	2 cut(s)	148, 329
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	3 cut(s)	126, 287, 478
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4V	TGCA	4 cut(s)	153, 190, 279, 321
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 187, 285
HpyF3I	CTNAG	2 cut(s)	81, 352
Hsp92II	CATG	7 cut(s)	65, 71, 283, 292, 335, 387, 483
KpnI	GGTACC	1 cut(s)	137
Ksp22I	TGATCA	4 cut(s)	58, 64, 70, 259
Kzo9I	GATC	8 cut(s)	58, 64, 70, 210, 259, 363, 398, 475
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	8 cut(s)	89, 93, 111, 156, 181, 195, 204, 240
Lsp1109I	GCAGC	2 cut(s)	113, 116
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	8 cut(s)	60, 66, 72, 212, 261, 365, 400, 477
MboI	GATC	8 cut(s)	58, 64, 70, 210, 259, 363, 398, 475
MboII	GAAGA	2 cut(s)	181, 254
MfeI	CAATTG	1 cut(s)	322
MflI	RGATCY	2 cut(s)	398, 475
MluCI	AATT	4 cut(s)	46, 322, 415, 464
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	7 cut(s)	215, 364, 389, 399, 466, 486, 508
MslI	CAYNNNNRTG	1 cut(s)	66
MspI	CCGG	2 cut(s)	76, 143
MunI	CAATTG	1 cut(s)	322
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	3 cut(s)	110, 187, 285
NcoI	CCATGG	1 cut(s)	479
NdeI	CATATG	1 cut(s)	264
NdeII	GATC	8 cut(s)	58, 64, 70, 210, 259, 363, 398, 475
NlaIII	CATG	7 cut(s)	65, 71, 283, 292, 335, 387, 483
NlaIV	GGNNCC	2 cut(s)	135, 477
NmeAIII	GCCGAG	1 cut(s)	514
NmuCI	GTSAC	1 cut(s)	374
NspI	RCATGY	2 cut(s)	335, 387
PagI	TCATGA	2 cut(s)	61, 67
PciI	ACATGT	1 cut(s)	383
PfeI	GAWTC	1 cut(s)	161
PinAI	ACCGGT	1 cut(s)	142
PkrI	GCNGC	2 cut(s)	103, 106
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PscI	ACATGT	1 cut(s)	383
PshAI	GACNNNNGTC	1 cut(s)	372
PspEI	GGTNACC	1 cut(s)	374
PspN4I	GGNNCC	2 cut(s)	135, 477
PspPI	GGNCC	1 cut(s)	145
PsuI	RGATCY	2 cut(s)	398, 475
RsaI	GTAC	2 cut(s)	14, 135
RsaNI	GTAC	2 cut(s)	13, 134
RseI	CAYNNNNRTG	1 cut(s)	66
SatI	GCNGC	2 cut(s)	102, 105
Sau3AI	GATC	8 cut(s)	58, 64, 70, 210, 259, 363, 398, 475
Sau96I	GGNCC	1 cut(s)	145
ScaI	AGTACT	1 cut(s)	14
SchI	GAGTC	1 cut(s)	239
SetI	ASST	8 cut(s)	9, 109, 115, 160, 298, 381, 408, 525
SfcI	CTRYAG	3 cut(s)	8, 108, 394
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	4 cut(s)	46, 322, 415, 464
SsiI	CCGC	1 cut(s)	27
StyI	CCWWGG	3 cut(s)	122, 301, 479
TaaI	ACNGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	366
TasI	AATT	4 cut(s)	46, 322, 415, 464
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	161
TscAI	CASTG	2 cut(s)	155, 189
TseFI	GTSAC	1 cut(s)	374
TseI	GCWGC	2 cut(s)	101, 104
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	3 cut(s)	17, 101, 296
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	2 cut(s)	155, 189
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	464
XceI	RCATGY	2 cut(s)	335, 387
ZrmI	AGTACT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.