Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004548

Physical Location & Seq

Genomic Coordinates Reverse (-)

29808239 .. 29808763

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G319400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTTACTCTCTCTTCTCAATCTATTCGGGATCAAGCTACACCACTCATCCAAACGTGGTCAATATCAAAAGGATAATTATATTCTTGATCCCCAGCCCGAGATCAATCCTTCAACTCAGTGGCTGGTACCATTACCCGTCCACTGCATAGCTGAATCCGTGAAGAACCAACTGCCAGTGGTGCAATACCGGGACTTTCTCAAGATCAAAACAGGCCAACCAGCAGAAGCAGAAGATGACTACAATAACAATGATCATATGTGTATTGTGTGCATGAACAGCATGGAAGGTAGCCAAGGGGTCAGAAAACTCTGCAATTGTTCACATGCTTTTCACAAGGAGTGCTTAGATGTTTGGATCGATGAGGGTCAGCTCACATGTCCTCTCTGTAGATCTAACTTATTGCCTAATTCCACTCCAAAATCAAATCATCATCATCACCATAAGGAGGTGGGAGAATTTGGAGAGGATCCATGGAGGGCCGAGAGGATGATTTACTTGTTTGGTGAGGATGAGCTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

175

Amino Acids

20.01

Weight (kDa)

5.84

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32950 FvH4_7g32960
malus_domestica	MD01G1228600.v1.1 MD07G1299400.v1.1 MD07G1299500.v1.1 MD07G1299600.v1.1
prunus_persica	Prupe.2G319200_v2.0.a1 Prupe.2G319300_v2.0.a1 Prupe.2G319400_v2.0.a1
pyrus_communis	pycom07g27170
rosa_chinensis	RchiOBHm_Chr1g0382911 RchiOBHm_Chr1g0382921
rosa_laevigata	RLG00000026149
rosa_multiflora	Rmu_co8270753.1_g000001 Rmu_co8320179.1_g000001 Rmu_sc0001785.1_g000002 Rmu_sc0010366.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277780
rosa_samantha	Rh1AG462300 Rh1AG462400 Rh1AG462500 Rh1AG462600 Rh1BG419300 Rh1BG419400 Rh1CG433000 Rh1CG433100 Rh1CG433200 Rh1CG433400 Rh1DG451400 Rh1DG451500
rosa_wichuraiana	Rw1G040940 Rw1G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	127
AccB1I	GGYRCC	1 cut(s)	127
AclWI	GGATC	5 cut(s)	38, 83, 365, 464, 477
AcsI	RAATTY	1 cut(s)	458
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	448
AflIII	ACRYGT	1 cut(s)	377
AgsI	TTSAA	1 cut(s)	114
AluBI	AGCT	4 cut(s)	37, 152, 373, 517
AluI	AGCT	4 cut(s)	37, 152, 373, 517
AlwI	GGATC	5 cut(s)	38, 83, 365, 464, 477
AlwNI	CAGNNNCTG	1 cut(s)	124
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	2 cut(s)	214, 480
ApoI	RAATTY	1 cut(s)	458
Asp718I	GGTACC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	480
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	431, 518
AvaI	CYCGRG	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	469
BanI	GGYRCC	1 cut(s)	127
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	191
BfmI	CTRYAG	1 cut(s)	388
BglII	AGATCT	1 cut(s)	392
Bme1390I	CCNGG	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	1 cut(s)	480
BmiI	GGNNCC	2 cut(s)	129, 471
BmrFI	CCNGG	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	360
BsaJI	CCNNGG	2 cut(s)	295, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	176
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	295, 473
BseGI	GGATG	3 cut(s)	47, 495, 517
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	176
BseYI	CCCAGC	1 cut(s)	93
BshFI	GGCC	2 cut(s)	216, 482
BshNI	GGYRCC	1 cut(s)	127
BshVI	ATCGAT	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	448
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	2 cut(s)	216, 482
BsoBI	CYCGRG	1 cut(s)	98
Bsp143I	GATC	8 cut(s)	30, 88, 102, 204, 253, 357, 392, 469
Bsp19I	CCATGG	1 cut(s)	473
BspANI	GGCC	2 cut(s)	216, 482
BspCNI	CTCAG	1 cut(s)	130
BspDI	ATCGAT	1 cut(s)	360
BspLI	GGNNCC	2 cut(s)	129, 471
BspPI	GGATC	5 cut(s)	38, 83, 365, 464, 477
BspT107I	GGYRCC	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	176
BssECI	CCNNGG	2 cut(s)	295, 473
BssMI	GATC	8 cut(s)	30, 88, 102, 204, 253, 357, 392, 469
BssT1I	CCWWGG	2 cut(s)	295, 473
Bst6I	CTCTTC	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	2 cut(s)	117, 346
BstDSI	CCRYGG	1 cut(s)	473
BstF5I	GGATG	3 cut(s)	47, 495, 517
BstKTI	GATC	8 cut(s)	33, 91, 105, 207, 256, 360, 395, 472
BstMBI	GATC	8 cut(s)	30, 88, 102, 204, 253, 357, 392, 469
BstMWI	GCNNNNNNNGC	2 cut(s)	181, 279
BstNSI	RCATGY	2 cut(s)	329, 381
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	388
BstX2I	RGATCY	2 cut(s)	392, 469
BstYI	RGATCY	2 cut(s)	392, 469
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	216, 482
BsuTUI	ATCGAT	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	473
BtsCI	GGATG	3 cut(s)	47, 495, 517
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	3 cut(s)	125, 142, 183
Cac8I	GCNNGC	1 cut(s)	519
CaiI	CAGNNNCTG	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	480
ClaI	ATCGAT	1 cut(s)	360
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	5 cut(s)	274, 283, 326, 378, 474
CviJI	RGCY	9 cut(s)	37, 97, 124, 152, 216, 294, 373, 482, 517
CviKI_1	RGCY	9 cut(s)	37, 97, 124, 152, 216, 294, 373, 482, 517
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	2 cut(s)	117, 346
DpnI	GATC	8 cut(s)	32, 90, 104, 206, 255, 359, 394, 471
DpnII	GATC	8 cut(s)	30, 88, 102, 204, 253, 357, 392, 469
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco130I	CCWWGG	2 cut(s)	295, 473
Eco88I	CYCGRG	1 cut(s)	98
EcoT14I	CCWWGG	2 cut(s)	295, 473
ErhI	CCWWGG	2 cut(s)	295, 473
FaeI	CATG	5 cut(s)	277, 286, 329, 381, 477
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	5 cut(s)	273, 282, 325, 377, 473
FauNDI	CATATG	1 cut(s)	258
FbaI	TGATCA	1 cut(s)	253
FokI	GGATG	2 cut(s)	34, 502
GsaI	CCCAGC	1 cut(s)	97
HaeIII	GGCC	2 cut(s)	216, 482
HapII	CCGG	1 cut(s)	190
Hin1II	CATG	5 cut(s)	277, 286, 329, 381, 477
HinfI	GANTC	1 cut(s)	155
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	2 cut(s)	431, 518
Hpy166II	GTNNAC	2 cut(s)	142, 323
Hpy188I	TCNGA	1 cut(s)	305
Hpy188III	TCNNGA	3 cut(s)	28, 86, 202
Hpy8I	GTNNAC	2 cut(s)	142, 323
HpyAV	CCTTC	2 cut(s)	120, 281
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	4 cut(s)	147, 184, 273, 315
HpyF10VI	GCNNNNNNNGC	2 cut(s)	181, 279
HpyF3I	CTNAG	2 cut(s)	117, 346
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	5 cut(s)	277, 286, 329, 381, 477
KpnI	GGTACC	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	253
Kzo9I	GATC	8 cut(s)	30, 88, 102, 204, 253, 357, 392, 469
LpnPI	CCDG	6 cut(s)	107, 110, 189, 198, 203, 234
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	8 cut(s)	32, 90, 104, 206, 255, 359, 394, 471
MboI	GATC	8 cut(s)	30, 88, 102, 204, 253, 357, 392, 469
MboII	GAAGA	3 cut(s)	5, 175, 245
MfeI	CAATTG	1 cut(s)	316
MflI	RGATCY	2 cut(s)	392, 469
MluCI	AATT	4 cut(s)	76, 316, 409, 458
MnlI	CCTC	7 cut(s)	358, 393, 442, 460, 471, 480, 502
MspI	CCGG	1 cut(s)	190
MspR9I	CCNGG	1 cut(s)	191
MunI	CAATTG	1 cut(s)	316
MwoI	GCNNNNNNNGC	2 cut(s)	181, 279
NciI	CCSGG	1 cut(s)	191
NcoI	CCATGG	1 cut(s)	473
NdeI	CATATG	1 cut(s)	258
NdeII	GATC	8 cut(s)	30, 88, 102, 204, 253, 357, 392, 469
NlaIII	CATG	5 cut(s)	277, 286, 329, 381, 477
NlaIV	GGNNCC	2 cut(s)	129, 471
NmeAIII	GCCGAG	1 cut(s)	508
NspI	RCATGY	2 cut(s)	329, 381
PciI	ACATGT	1 cut(s)	377
PfeI	GAWTC	1 cut(s)	155
PscI	ACATGT	1 cut(s)	377
PspFI	CCCAGC	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	129, 471
PspPI	GGNCC	1 cut(s)	480
PstNI	CAGNNNCTG	1 cut(s)	124
PsuI	RGATCY	2 cut(s)	392, 469
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
Sau3AI	GATC	8 cut(s)	30, 88, 102, 204, 253, 357, 392, 469
Sau96I	GGNCC	1 cut(s)	480
ScrFI	CCNGG	1 cut(s)	191
SetI	ASST	7 cut(s)	39, 58, 154, 292, 375, 453, 519
SfcI	CTRYAG	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	4 cut(s)	76, 316, 409, 458
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	2 cut(s)	295, 473
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	360
TasI	AATT	4 cut(s)	76, 316, 409, 458
TfiI	GAWTC	1 cut(s)	155
TscAI	CASTG	3 cut(s)	125, 149, 183
TspDTI	ATGAA	1 cut(s)	290
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	3 cut(s)	125, 149, 183
XapI	RAATTY	1 cut(s)	458
XceI	RCATGY	2 cut(s)	329, 381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.