Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004548

Physical Location & Seq

Genomic Coordinates Reverse (-)

29803501 .. 29804217

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G319200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGATCAAGATACACTATCACTTCTCATTCAAACCTGATCAATATCATAAGAATAATAATCATACGATTGATGATCATGCTCATCAGCTGGTCCAGAATAATCTGGCAGCGGCAGCGGCTCCTTCACCTTGGTTGGTAGTACCATTACCGGTTCAATGCATAGCTGAATTCGTCAAGAACCGACTCCCGGTGGTGCAATACAGGGACTTTATCAGGATCAAAACAGGCCAACCAGAAGCAGATGAGCCCAGTAATAATAATATGCGTATTGTGTGCATGAATAGCATGGAGGGTAGCCAAGTGTGCTTGGATTTTTGGATTGATGAGGGTCAGCTAACATGCCCTCTCTGTAGATCTGAGCTAGTGCCTAATTCTACTCCGAAAACGAAAGACCATAAGGAGATGGGAGATTTTGAAGAGGATGATCCATGGAGGGCGGAGAGCATGGTTTACTTGTTTGATAGACCGGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

159

Amino Acids

18.3

Weight (kDa)

5.27

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32950 FvH4_7g32960
malus_domestica	MD01G1228600.v1.1 MD07G1299400.v1.1 MD07G1299500.v1.1 MD07G1299600.v1.1
prunus_persica	Prupe.2G319200_v2.0.a1 Prupe.2G319300_v2.0.a1 Prupe.2G319400_v2.0.a1
pyrus_communis	pycom07g27170
rosa_chinensis	RchiOBHm_Chr1g0382911 RchiOBHm_Chr1g0382921
rosa_laevigata	RLG00000026149
rosa_multiflora	Rmu_co8270753.1_g000001 Rmu_co8320179.1_g000001 Rmu_sc0001785.1_g000002 Rmu_sc0010366.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277780
rosa_samantha	Rh1AG462300 Rh1AG462400 Rh1AG462500 Rh1AG462600 Rh1BG419300 Rh1BG419400 Rh1CG433000 Rh1CG433100 Rh1CG433200 Rh1CG433400 Rh1DG451400 Rh1DG451500
rosa_wichuraiana	Rw1G040940 Rw1G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	110, 116, 437
AclWI	GGATC	2 cut(s)	224, 419
AcsI	RAATTY	1 cut(s)	167
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgeI	ACCGGT	1 cut(s)	148
AgsI	TTSAA	3 cut(s)	31, 155, 416
AluBI	AGCT	4 cut(s)	88, 164, 334, 361
AluI	AGCT	4 cut(s)	88, 164, 334, 361
AlwI	GGATC	2 cut(s)	224, 419
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	2 cut(s)	107, 113
ApoI	RAATTY	1 cut(s)	167
AsiGI	ACCGGT	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	91
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	117
AvaII	GGWCC	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	119, 125
BccI	CCATC	1 cut(s)	397
BclI	TGATCA	3 cut(s)	3, 37, 73
BcnI	CCSGG	1 cut(s)	188
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	349
BglII	AGATCT	1 cut(s)	353
BisI	GCNGC	4 cut(s)	108, 111, 114, 117
BlsI	GCNGC	4 cut(s)	109, 112, 115, 118
Bme1390I	CCNGG	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	188
BmrI	ACTGGG	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	188
BsaBI	GATNNNNATC	1 cut(s)	42
BsaJI	CCNNGG	2 cut(s)	128, 428
BsaWI	WCCGGW	2 cut(s)	148, 466
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	1 cut(s)	249
Bse8I	GATNNNNATC	1 cut(s)	42
BseDI	CCNNGG	2 cut(s)	128, 428
BseGI	GGATG	1 cut(s)	427
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	249
BseXI	GCAGC	2 cut(s)	119, 125
BshFI	GGCC	1 cut(s)	228
BshTI	ACCGGT	1 cut(s)	148
BsiSI	CCGG	3 cut(s)	149, 188, 467
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	6 cut(s)	3, 37, 73, 216, 353, 424
Bsp19I	CCATGG	1 cut(s)	428
BspACI	CCGC	3 cut(s)	110, 116, 437
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	1 cut(s)	349
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	2 cut(s)	224, 419
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	249
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	128, 428
BssMI	GATC	6 cut(s)	3, 37, 73, 216, 353, 424
BssT1I	CCWWGG	2 cut(s)	128, 428
Bst6I	CTCTTC	1 cut(s)	411
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	428
BstF5I	GGATG	1 cut(s)	427
BstKTI	GATC	6 cut(s)	6, 40, 76, 219, 356, 427
BstMBI	GATC	6 cut(s)	3, 37, 73, 216, 353, 424
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 116, 282, 303
BstNSI	RCATGY	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	1 cut(s)	349
BstV1I	GCAGC	2 cut(s)	119, 125
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	428
BtsCI	GGATG	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	140
CspAI	ACCGGT	1 cut(s)	148
CviAII	CATG	6 cut(s)	77, 277, 286, 339, 429, 445
CviJI	RGCY	8 cut(s)	88, 119, 164, 228, 247, 297, 334, 361
CviKI_1	RGCY	8 cut(s)	88, 119, 164, 228, 247, 297, 334, 361
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	6 cut(s)	5, 39, 75, 218, 355, 426
DpnII	GATC	6 cut(s)	3, 37, 73, 216, 353, 424
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
EciI	GGCGGA	1 cut(s)	452
Eco130I	CCWWGG	2 cut(s)	128, 428
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	167
EcoT14I	CCWWGG	2 cut(s)	128, 428
EcoT22I	ATGCAT	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	2 cut(s)	128, 428
FaeI	CATG	6 cut(s)	80, 280, 289, 342, 432, 448
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	6 cut(s)	76, 276, 285, 338, 428, 444
FbaI	TGATCA	3 cut(s)	3, 37, 73
Fnu4HI	GCNGC	4 cut(s)	108, 111, 114, 117
FokI	GGATG	1 cut(s)	434
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	4 cut(s)	108, 111, 114, 117
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	4 cut(s)	108, 111, 114, 117
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	3 cut(s)	149, 188, 467
Hin1II	CATG	6 cut(s)	80, 280, 289, 342, 432, 448
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	3 cut(s)	149, 188, 467
HphI	GGTGA	1 cut(s)	117
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	2 cut(s)	358, 381
Hpy188III	TCNNGA	4 cut(s)	7, 94, 175, 214
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	1 cut(s)	132
HpyCH4V	TGCA	3 cut(s)	159, 196, 276
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 116, 282, 303
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	6 cut(s)	80, 280, 289, 342, 432, 448
Ksp22I	TGATCA	3 cut(s)	3, 37, 73
Kzo9I	GATC	6 cut(s)	3, 37, 73, 216, 353, 424
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	2 cut(s)	119, 125
MaeI	CTAG	1 cut(s)	362
MalI	GATC	6 cut(s)	5, 39, 75, 218, 355, 426
MboI	GATC	6 cut(s)	3, 37, 73, 216, 353, 424
MboII	GAAGA	1 cut(s)	428
MflI	RGATCY	1 cut(s)	353
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	3 cut(s)	167, 370, 472
MlyI	GAGTC	1 cut(s)	177
MnlI	CCTC	5 cut(s)	283, 319, 354, 412, 426
Mph1103I	ATGCAT	1 cut(s)	161
MspA1I	CMGCKG	3 cut(s)	88, 110, 116
MspI	CCGG	3 cut(s)	149, 188, 467
MspR9I	CCNGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	4 cut(s)	113, 116, 282, 303
NciI	CCSGG	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	428
NdeII	GATC	6 cut(s)	3, 37, 73, 216, 353, 424
NlaIII	CATG	6 cut(s)	80, 280, 289, 342, 432, 448
NlaIV	GGNNCC	1 cut(s)	120
NsiI	ATGCAT	1 cut(s)	161
NspI	RCATGY	1 cut(s)	342
PinAI	ACCGGT	1 cut(s)	148
PkrI	GCNGC	4 cut(s)	109, 112, 115, 118
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	91
PsuI	RGATCY	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
SatI	GCNGC	4 cut(s)	108, 111, 114, 117
Sau3AI	GATC	6 cut(s)	3, 37, 73, 216, 353, 424
Sau96I	GGNCC	1 cut(s)	91
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	6 cut(s)	37, 90, 130, 166, 336, 363
SfcI	CTRYAG	1 cut(s)	349
SinI	GGWCC	1 cut(s)	91
Sse9I	AATT	3 cut(s)	167, 370, 472
SsiI	CCGC	3 cut(s)	110, 116, 437
SspMI	CTAG	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	2 cut(s)	128, 428
TasI	AATT	3 cut(s)	167, 370, 472
TauI	GCSGC	2 cut(s)	113, 119
TseI	GCWGC	2 cut(s)	107, 113
TspDTI	ATGAA	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	1 cut(s)	342
XspI	CTAG	1 cut(s)	362
Zsp2I	ATGCAT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.