Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004548

Physical Location & Seq

Genomic Coordinates Reverse (-)

26942117 .. 26942991

Gene Structure 875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGCATCATCTCCTAGTGTCTGGTTTACATTACTGCTTACTCATTAAACAACGTCATCAACAATTTAACAAGCTACATATTTATGAACATCGTCTGCTAGAGAATGATTCATTCCCACCACCGCCTCCACAAGCAGAGACTCCTTCATGGCGGCCTTCACCTTGGTTGGTTCCGTTACCGGTCCACTGCATAGCTGAATCCGTCAAGAACCAACTCCCGGTGCTGCAATACCAAGAAACTCTCATGAAAACACGAAGGCAAGCAGAAGCAGAAGAACAGGACTGCCACGTGAACATGTGCATAGTGTGCATGGATAGCATGGAGGAAGGCCAAGCGGTGAGAGAGCCATGCAATTGTTCGCATGGTTTTCATAAGGAGTGCCTAGATGTCTGGATTGATCAAGGTCAGCTAACATGTCCTCTCTGTAGATTGGAGCTATTGCCTAAAACTTGTAGTACTTCCCCAAACTCAAAAGATAAGGATCCATGGAGGAAGGAGAGGATGGTTTACTTGTTTGGTGATGATTACTTCATGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

180

Amino Acids

20.94

Weight (kDa)

6.04

Isoelectric Point (pI)

68.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32950 FvH4_7g32960
malus_domestica	MD01G1228600.v1.1 MD07G1299400.v1.1 MD07G1299500.v1.1 MD07G1299600.v1.1
prunus_persica	Prupe.2G319200_v2.0.a1 Prupe.2G319300_v2.0.a1 Prupe.2G319400_v2.0.a1
pyrus_communis	pycom07g27170
rosa_chinensis	RchiOBHm_Chr1g0382911 RchiOBHm_Chr1g0382921
rosa_laevigata	RLG00000026149
rosa_multiflora	Rmu_co8270753.1_g000001 Rmu_co8320179.1_g000001 Rmu_sc0001785.1_g000002 Rmu_sc0010366.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277780
rosa_samantha	Rh1AG462300 Rh1AG462400 Rh1AG462500 Rh1AG462600 Rh1BG419300 Rh1BG419400 Rh1CG433000 Rh1CG433100 Rh1CG433200 Rh1CG433400 Rh1DG451400 Rh1DG451500
rosa_wichuraiana	Rw1G040940 Rw1G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	122, 151, 335
AclWI	GGATC	2 cut(s)	476, 489
AcvI	CACGTG	1 cut(s)	289
AfaI	GTAC	1 cut(s)	457
AfiI	CCNNNNNNNGG	1 cut(s)	217
AflIII	ACRYGT	2 cut(s)	294, 413
AgeI	ACCGGT	1 cut(s)	178
AluBI	AGCT	5 cut(s)	73, 194, 409, 436, 537
AluI	AGCT	5 cut(s)	73, 194, 409, 436, 537
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	2 cut(s)	476, 489
AoxI	GGCC	2 cut(s)	152, 328
ApeKI	GCWGC	1 cut(s)	223
AsiGI	ACCGGT	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	181
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	3 cut(s)	150, 349, 530
AvaII	GGWCC	1 cut(s)	181
BamHI	GGATCC	1 cut(s)	481
BbrPI	CACGTG	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	210
BccI	CCATC	1 cut(s)	496
BclI	TGATCA	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	4 cut(s)	14, 98, 383, 538
BfmI	CTRYAG	1 cut(s)	424
BisI	GCNGC	2 cut(s)	152, 224
BlsI	GCNGC	2 cut(s)	153, 225
BmcAI	AGTACT	1 cut(s)	457
Bme1390I	CCNGG	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	2 cut(s)	171, 483
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	289
BsaBI	GATNNNNATC	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	161, 485
BsaWI	WCCGGW	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse118I	RCCGGY	1 cut(s)	178
Bse8I	GATNNNNATC	1 cut(s)	480
BseDI	CCNNGG	2 cut(s)	161, 485
BseGI	GGATG	1 cut(s)	507
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	210
BshFI	GGCC	2 cut(s)	154, 330
BshTI	ACCGGT	1 cut(s)	178
BsiSI	CCGG	2 cut(s)	179, 218
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	154, 330
Bsp143I	GATC	2 cut(s)	397, 481
Bsp19I	CCATGG	1 cut(s)	485
BspACI	CCGC	3 cut(s)	122, 151, 335
BspANI	GGCC	2 cut(s)	154, 330
BspHI	TCATGA	2 cut(s)	243, 531
BspLI	GGNNCC	2 cut(s)	171, 483
BspPI	GGATC	2 cut(s)	476, 489
BsrFI	RCCGGY	1 cut(s)	178
BssAI	RCCGGY	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	161, 485
BssMI	GATC	2 cut(s)	397, 481
BssT1I	CCWWGG	2 cut(s)	161, 485
BstAPI	GCANNNNNTGC	1 cut(s)	306
BstBAI	YACGTR	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	485
BstF5I	GGATG	1 cut(s)	507
BstKTI	GATC	2 cut(s)	400, 484
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	2 cut(s)	397, 481
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 315
BstNSI	RCATGY	2 cut(s)	298, 417
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	1 cut(s)	424
BstV1I	GCAGC	1 cut(s)	210
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuRI	GGCC	2 cut(s)	154, 330
BtgI	CCRYGG	1 cut(s)	485
BtsCI	GGATG	1 cut(s)	507
BtsI	GCAGTG	1 cut(s)	184
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	261
CciI	TCATGA	2 cut(s)	243, 531
Cfr10I	RCCGGY	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	456
CspAI	ACCGGT	1 cut(s)	178
CviJI	RGCY	8 cut(s)	73, 154, 194, 330, 346, 409, 436, 537
CviKI_1	RGCY	8 cut(s)	73, 154, 194, 330, 346, 409, 436, 537
CviQI	GTAC	1 cut(s)	456
DpnI	GATC	2 cut(s)	399, 483
DpnII	GATC	2 cut(s)	397, 481
Eco130I	CCWWGG	2 cut(s)	161, 485
Eco47I	GGWCC	1 cut(s)	181
Eco72I	CACGTG	1 cut(s)	289
EcoT14I	CCWWGG	2 cut(s)	161, 485
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	161, 485
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	2 cut(s)	152, 224
FokI	GGATG	1 cut(s)	514
Fsp4HI	GCNGC	2 cut(s)	152, 224
FspBI	CTAG	4 cut(s)	14, 98, 383, 538
GluI	GCNGC	2 cut(s)	152, 224
HaeIII	GGCC	2 cut(s)	154, 330
HapII	CCGG	2 cut(s)	179, 218
HinfI	GANTC	3 cut(s)	107, 139, 197
HpaII	CCGG	2 cut(s)	179, 218
HphI	GGTGA	3 cut(s)	150, 349, 530
Hpy166II	GTNNAC	4 cut(s)	26, 184, 292, 508
Hpy188III	TCNNGA	4 cut(s)	205, 244, 391, 532
Hpy8I	GTNNAC	4 cut(s)	26, 184, 292, 508
HpyAV	CCTTC	5 cut(s)	153, 165, 249, 320, 487
HpyCH4IV	ACGT	2 cut(s)	52, 288
HpyCH4V	TGCA	6 cut(s)	4, 189, 226, 300, 309, 351
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 315
HpySE526I	ACGT	2 cut(s)	52, 288
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	397, 481
LmnI	GCTCC	1 cut(s)	433
LpnPI	CCDG	5 cut(s)	6, 192, 231, 263, 376
Lsp1109I	GCAGC	1 cut(s)	210
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	4 cut(s)	14, 98, 383, 538
MaeII	ACGT	2 cut(s)	52, 288
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	2 cut(s)	399, 483
MboI	GATC	2 cut(s)	397, 481
MboII	GAAGA	1 cut(s)	284
MfeI	CAATTG	1 cut(s)	352
MflI	RGATCY	1 cut(s)	481
MluCI	AATT	2 cut(s)	62, 352
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	5 cut(s)	135, 316, 429, 483, 492
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	45, 66
MslI	CAYNNNNRTG	1 cut(s)	81
MspI	CCGG	2 cut(s)	179, 218
MspR9I	CCNGG	1 cut(s)	218
MunI	CAATTG	1 cut(s)	352
MwoI	GCNNNNNNNGC	2 cut(s)	306, 315
NciI	CCSGG	1 cut(s)	218
NcoI	CCATGG	1 cut(s)	485
NdeII	GATC	2 cut(s)	397, 481
NlaIV	GGNNCC	2 cut(s)	171, 483
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	298, 417
PagI	TCATGA	2 cut(s)	243, 531
PciI	ACATGT	2 cut(s)	294, 413
PfeI	GAWTC	2 cut(s)	107, 197
PinAI	ACCGGT	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	153, 225
PleI	GAGTC	1 cut(s)	133
PmaCI	CACGTG	1 cut(s)	289
PmlI	CACGTG	1 cut(s)	289
PpsI	GAGTC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	289
PscI	ACATGT	2 cut(s)	294, 413
PspCI	CACGTG	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	171, 483
PspPI	GGNCC	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	481
RsaI	GTAC	1 cut(s)	457
RsaNI	GTAC	1 cut(s)	456
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	45, 66
SatI	GCNGC	2 cut(s)	152, 224
Sau3AI	GATC	2 cut(s)	397, 481
Sau96I	GGNCC	1 cut(s)	181
ScaI	AGTACT	1 cut(s)	457
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	9 cut(s)	55, 75, 163, 196, 291, 406, 411, 438, 539
SfaNI	GCATC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	424
SinI	GGWCC	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	81
Sse9I	AATT	2 cut(s)	62, 352
SsiI	CCGC	3 cut(s)	122, 151, 335
SspMI	CTAG	4 cut(s)	14, 98, 383, 538
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	2 cut(s)	161, 485
TaiI	ACGT	2 cut(s)	55, 291
TasI	AATT	2 cut(s)	62, 352
TatI	WGTACW	1 cut(s)	455
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	2 cut(s)	107, 197
Tru1I	TTAA	2 cut(s)	45, 66
Tru9I	TTAA	2 cut(s)	45, 66
TscAI	CASTG	1 cut(s)	191
TseI	GCWGC	1 cut(s)	223
TspDTI	ATGAA	6 cut(s)	99, 99, 135, 260, 359, 520
TspGWI	ACGGA	2 cut(s)	162, 190
TspRI	CASTG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	181
XceI	RCATGY	2 cut(s)	298, 417
XspI	CTAG	4 cut(s)	14, 98, 383, 538
ZrmI	AGTACT	1 cut(s)	457
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.