Rw1G040950

Ring finger domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004548
Physical Location & Seq
Forward (+)
68028066 .. 68028748
683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G040950.1

Sequence Viewer

Length: 645 bp
ATGGATCAACTGAGCAACCTAGCTGTACTAATTTGTCATCGTCTCTTTCTATTCATGAAGAAGATGATCGTATACTCATTGTTCAAACCTGAAGTTGAAGACAAGGTCGACACTAACGATCATCATCAGGTCGAGATGAATTTCTCACCTACAGCCGCTCCGAATTGGTTGCACTTGGAGGTACCAGTAGTTCCAGTGCTAGTTGACACTGAATCGGTTAAGCAACTTCCGGTTGTGCAATACCGGAATCGAATGATGGAGAGAAGAGATCAATCGCGATATAGAGATCACGAGGATGACGAGTCTATGTGTATAGTGTGCATGAATAGCATAGACGCTATAGATGAAGTAAGAGAGCTGAAGAACTGTTCCCACGGTCAGGTAACCTGTCCTCTGTGCAGGTCTAAGCTATTGCCAACTGCTAGGGCTACTCCAAATGAACATTTGAAACCTGCGGGAGGGGATCCATGGAGATCGGAGAGGATGATTTACTTGTTCGGTGATGATTGCTTAGCACTGGATAGACGATTAGACAGATGTAGGTACTATCGAATCAGTTTGCATAAGTTTTTTCAATCAAATGCTGATTTTTCCTATTTTTCAAAATCGTGGGAGATTTTCAACCCAAAGTCGTTACCTACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

214

Amino Acids

25.13

Weight (kDa)

6.44

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 390, 460
Acc65I GGTACC 1 cut(s) 181
AccB1I GGYRCC 1 cut(s) 181
AccBSI CCGCTC 1 cut(s) 158
AccI GTMKAC 2 cut(s) 72, 108
AccII CGCG 1 cut(s) 277
AciI CCGC 2 cut(s) 156, 455
AclWI GGATC 3 cut(s) 12, 458, 471
AcsI RAATTY 1 cut(s) 139
AcuI CTGAAG 2 cut(s) 111, 380
AfaI GTAC 3 cut(s) 27, 183, 545
AfiI CCNNNNNNNGG 2 cut(s) 379, 458
AgsI TTSAA 6 cut(s) 85, 98, 448, 575, 603, 622
AluBI AGCT 3 cut(s) 23, 358, 409
AluI AGCT 3 cut(s) 23, 358, 409
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 3 cut(s) 12, 458, 471
ApoI RAATTY 1 cut(s) 139
Asp718I GGTACC 1 cut(s) 181
AsuHPI GGTGA 2 cut(s) 138, 512
BamHI GGATCC 1 cut(s) 463
BanI GGYRCC 1 cut(s) 181
BauI CACGAG 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 105
BccI CCATC 1 cut(s) 250
BcgI CGANNNNNNTGC 2 cut(s) 151, 185
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 3 cut(s) 20, 200, 423
BfmI CTRYAG 2 cut(s) 150, 339
BfuAI ACCTGC 2 cut(s) 390, 460
BisI GCNGC 1 cut(s) 156
BlpI GCTNAGC 1 cut(s) 511
BlsI GCNGC 1 cut(s) 157
BmiI GGNNCC 2 cut(s) 183, 465
BpiI GAAGAC 1 cut(s) 105
Bpu1102I GCTNAGC 1 cut(s) 511
BsaBI GATNNNNATC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 373, 467
BsaWI WCCGGW 2 cut(s) 229, 243
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 458
Bse1I ACTGG 3 cut(s) 185, 194, 522
Bse8I GATNNNNATC 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 373, 467
BseGI GGATG 2 cut(s) 301, 489
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 2 cut(s) 379, 458
BseNI ACTGG 3 cut(s) 185, 194, 522
BsgI GTGCAG 1 cut(s) 418
Bsh1236I CGCG 1 cut(s) 277
BshNI GGYRCC 1 cut(s) 181
BsiSI CCGG 2 cut(s) 230, 244
BslI CCNNNNNNNGG 2 cut(s) 379, 458
BsmAI GTCTC 1 cut(s) 47
BsmBI CGTCTC 1 cut(s) 47
Bsp143I GATC 7 cut(s) 4, 66, 118, 268, 286, 463, 473
Bsp1720I GCTNAGC 1 cut(s) 511
Bsp19I CCATGG 1 cut(s) 467
Bsp68I TCGCGA 1 cut(s) 277
BspACI CCGC 2 cut(s) 156, 455
BspFNI CGCG 1 cut(s) 277
BspHI TCATGA 1 cut(s) 54
BspLI GGNNCC 2 cut(s) 183, 465
BspMI ACCTGC 2 cut(s) 390, 460
BspPI GGATC 3 cut(s) 12, 458, 471
BspT107I GGYRCC 1 cut(s) 181
BsrBI CCGCTC 1 cut(s) 158
BsrI ACTGG 3 cut(s) 185, 194, 522
BssECI CCNNGG 2 cut(s) 373, 467
BssMI GATC 7 cut(s) 4, 66, 118, 268, 286, 463, 473
BssNAI GTATAC 1 cut(s) 73
BssSI CACGAG 1 cut(s) 290
BssT1I CCWWGG 1 cut(s) 467
Bst1107I GTATAC 1 cut(s) 73
Bst2BI CACGAG 1 cut(s) 290
Bst4CI ACNGT 2 cut(s) 368, 377
Bst6I CTCTTC 1 cut(s) 259
BstDEI CTNAG 3 cut(s) 11, 405, 511
BstDSI CCRYGG 2 cut(s) 373, 467
BstEII GGTNACC 1 cut(s) 382
BstENI CCTNNNNNAGG 1 cut(s) 456
BstF5I GGATG 2 cut(s) 301, 489
BstFNI CGCG 1 cut(s) 277
BstKTI GATC 7 cut(s) 7, 69, 121, 271, 289, 466, 476
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 7 cut(s) 4, 66, 118, 268, 286, 463, 473
BstMWI GCNNNNNNNGC 1 cut(s) 327
BstPI GGTNACC 1 cut(s) 382
BstSFI CTRYAG 2 cut(s) 150, 339
BstUI CGCG 1 cut(s) 277
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 463
BstYI RGATCY 1 cut(s) 463
BstZ17I GTATAC 1 cut(s) 73
BtgI CCRYGG 2 cut(s) 373, 467
BtsCI GGATG 2 cut(s) 301, 489
BtsIMutI CAGTG 3 cut(s) 201, 207, 515
BtuMI TCGCGA 1 cut(s) 277
BveI ACCTGC 2 cut(s) 390, 460
CciI TCATGA 1 cut(s) 54
CseI GACGC 1 cut(s) 344
Csp6I GTAC 3 cut(s) 26, 182, 544
CviAII CATG 3 cut(s) 55, 322, 468
CviJI RGCY 5 cut(s) 23, 155, 358, 409, 428
CviKI_1 RGCY 5 cut(s) 23, 155, 358, 409, 428
CviQI GTAC 3 cut(s) 26, 182, 544
DdeI CTNAG 3 cut(s) 11, 405, 511
DpnI GATC 7 cut(s) 6, 68, 120, 270, 288, 465, 475
DpnII GATC 7 cut(s) 4, 66, 118, 268, 286, 463, 473
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 467
Eco57I CTGAAG 2 cut(s) 111, 380
Eco91I GGTNACC 1 cut(s) 382
EcoNI CCTNNNNNAGG 1 cut(s) 456
EcoO65I GGTNACC 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 467
ErhI CCWWGG 1 cut(s) 467
Esp3I CGTCTC 1 cut(s) 47
FaeI CATG 3 cut(s) 58, 325, 471
FatI CATG 3 cut(s) 54, 321, 467
FauI CCCGC 1 cut(s) 448
FblI GTMKAC 2 cut(s) 72, 108
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 2 cut(s) 308, 496
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 3 cut(s) 20, 200, 423
GluI GCNGC 1 cut(s) 156
HapII CCGG 2 cut(s) 230, 244
HgaI GACGC 1 cut(s) 344
Hin1II CATG 3 cut(s) 58, 325, 471
HincII GTYRAC 2 cut(s) 109, 205
HindII GTYRAC 2 cut(s) 109, 205
HinfI GANTC 4 cut(s) 212, 247, 302, 552
HpaII CCGG 2 cut(s) 230, 244
HphI GGTGA 2 cut(s) 138, 512
Hpy166II GTNNAC 3 cut(s) 73, 109, 205
Hpy188I TCNGA 2 cut(s) 162, 478
Hpy188III TCNNGA 4 cut(s) 55, 133, 276, 290
Hpy8I GTNNAC 3 cut(s) 73, 109, 205
HpyCH4III ACNGT 2 cut(s) 368, 377
HpyCH4V TGCA 5 cut(s) 172, 238, 321, 399, 562
HpyF10VI GCNNNNNNNGC 1 cut(s) 327
HpyF3I CTNAG 3 cut(s) 11, 405, 511
Hsp92II CATG 3 cut(s) 58, 325, 471
KpnI GGTACC 1 cut(s) 185
Kzo9I GATC 7 cut(s) 4, 66, 118, 268, 286, 463, 473
LmnI GCTCC 1 cut(s) 163
MaeI CTAG 3 cut(s) 20, 200, 423
MaeIII GTNAC 2 cut(s) 382, 633
MalI GATC 7 cut(s) 6, 68, 120, 270, 288, 465, 475
MbiI CCGCTC 1 cut(s) 158
MboI GATC 7 cut(s) 4, 66, 118, 268, 286, 463, 473
MboII GAAGA 5 cut(s) 70, 73, 110, 276, 373
MflI RGATCY 1 cut(s) 463
MluCI AATT 3 cut(s) 30, 139, 163
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 5 cut(s) 172, 286, 402, 452, 474
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 2 cut(s) 230, 244
MvnI CGCG 1 cut(s) 277
MwoI GCNNNNNNNGC 1 cut(s) 327
NcoI CCATGG 1 cut(s) 467
NdeII GATC 7 cut(s) 4, 66, 118, 268, 286, 463, 473
NlaIII CATG 3 cut(s) 58, 325, 471
NlaIV GGNNCC 2 cut(s) 183, 465
NruI TCGCGA 1 cut(s) 277
PagI TCATGA 1 cut(s) 54
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 297
PfeI GAWTC 3 cut(s) 212, 247, 552
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PspEI GGTNACC 1 cut(s) 382
PspN4I GGNNCC 2 cut(s) 183, 465
PsrI GAACNNNNNNTAC 2 cut(s) 174, 206
PsuI RGATCY 1 cut(s) 463
PsyI GACNNNGTC 1 cut(s) 104
RruI TCGCGA 1 cut(s) 277
RsaI GTAC 3 cut(s) 27, 183, 545
RsaNI GTAC 3 cut(s) 26, 182, 544
RseI CAYNNNNRTG 1 cut(s) 294
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 1 cut(s) 156
Sau3AI GATC 7 cut(s) 4, 66, 118, 268, 286, 463, 473
SchI GAGTC 1 cut(s) 311
SfcI CTRYAG 2 cut(s) 150, 339
SmiMI CAYNNNNRTG 1 cut(s) 294
Sse9I AATT 3 cut(s) 30, 139, 163
SsiI CCGC 2 cut(s) 156, 455
SspMI CTAG 3 cut(s) 20, 200, 423
StyI CCWWGG 1 cut(s) 467
TaaI ACNGT 2 cut(s) 368, 377
TaqI TCGA 4 cut(s) 108, 132, 250, 550
TasI AATT 3 cut(s) 30, 139, 163
TatI WGTACW 1 cut(s) 25
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 3 cut(s) 212, 247, 552
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 3 cut(s) 201, 214, 522
TspDTI ATGAA 6 cut(s) 43, 71, 152, 338, 360, 453
TspRI CASTG 3 cut(s) 201, 214, 522
Tth111I GACNNNGTC 1 cut(s) 104
XagI CCTNNNNNAGG 1 cut(s) 456
XapI RAATTY 1 cut(s) 139
XmiI GTMKAC 2 cut(s) 72, 108
XspI CTAG 3 cut(s) 20, 200, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.