Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001444

Physical Location & Seq

Genomic Coordinates Forward (+)

41399354 .. 41399821

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1177600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGACGATATGATCTCTGTTCAATCAACGGTTCAACTGTCTTGGACACAAATATTTTCACATTCTTCGCTATGGGCCCAGCCCCCACAGGTGGGAAAAGTCCAGCCTTACCCTCGAAAATTCGAAGGGTTCATAATGTCTCGCATCAAGAACATCACTCTCACTTCCGGCCCACAAAGCCCATCATGTAAAGTCCAGCACAATGTTTCTGCCCTAGTATTCAGTGCAGGAGGGTACACCGGAAACTTCTTCCATGACTTCGATGACGGGTTTGTTCCGCTCTTCATCACCGTCAACACAATCTTCCCCGATCAAGACATCGTGATCGTGGTTTCCGAAGCTCCCTATTGGTGGCCTAGTAGGTATGCAGATCTACTAGCAATGTTCGACAAGTACCCTATCATTATCCTCAAAAATACTACTGCCACCCATTGTTTTCATGCCGCCACCCATAGGCCTCATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

DUF563

Protein Analysis

156

Amino Acids

17.55

Weight (kDa)

6.63

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03360 AT2G03360 AT2G03370 AT2G03370
fragaria_vesca	FvH4_4g30540 FvH4_4g30550 FvH4_4g30551
malus_domestica	MD00G1177600.v1.1 MD00G1177700.v1.1 MD13G1066400.v1.1 MD16G1065500.v1.1 MD16G1065600.v1.1
prunus_persica	Prupe.1G281500_v2.0.a1 Prupe.1G281500_v2.0.a1 Prupe.1G281500_v2.0.a1 Prupe.1G281600_v2.0.a1
pyrus_communis	pycom16g05720
rosa_chinensis	RchiOBHm_Chr4g0438911 RchiOBHm_Chr4g0438921 RchiOBHm_Chr4g0438931
rosa_laevigata	RLG00000006317 RLG00000006318 RLG00000006320
rosa_multiflora	Rmu_co8325543.1_g000001 Rmu_sc0002505.1_g000027 Rmu_sc0005887.1_g000002 Rmu_sc0005887.1_g000004 Rmu_sc0032189.1_g000001 Rmu_sc0038333.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379930 Rroxscaffold_5G00379940 Rroxscaffold_5G00379950
rosa_rugosa	Rorug04G0314300 Rorug04G0314300 Rorug04G0314400
rosa_samantha	Rh4AG365000 Rh4AG365100 Rh4BG376100 Rh4BG376200 Rh4BG376300 Rh4CG390200 Rh4CG390300 Rh4CG390400 Rh4DG370800 Rh4DG370900 Rh4DG371000
rosa_wichuraiana	Rw0G007320 Rw0G007330 Rw0G007340 Rw0G016870 Rw0G016880 Rw0G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	280
AciI	CCGC	2 cut(s)	278, 444
AcsI	RAATTY	1 cut(s)	119
AfaI	GTAC	2 cut(s)	236, 395
AfiI	CCNNNNNNNGG	4 cut(s)	91, 92, 351, 453
AgsI	TTSAA	2 cut(s)	23, 35
AluBI	AGCT	1 cut(s)	341
AluI	AGCT	1 cut(s)	341
Alw26I	GTCTC	1 cut(s)	144
AoxI	GGCC	4 cut(s)	75, 169, 353, 455
ApaI	GGGCCC	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	119
AspS9I	GGNCC	3 cut(s)	75, 76, 170
AsuHPI	GGTGA	1 cut(s)	280
AsuII	TTCGAA	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	79
BccI	CCATC	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	3 cut(s)	215, 357, 377
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	1 cut(s)	444
BlsI	GCNGC	1 cut(s)	445
BmgT120I	GGNCC	3 cut(s)	75, 76, 170
BmiI	GGNNCC	1 cut(s)	77
BmsI	GCATC	1 cut(s)	153
Bpu14I	TTCGAA	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	4 cut(s)	91, 92, 351, 453
Bse3DI	GCAATG	1 cut(s)	387
BseLI	CCNNNNNNNGG	4 cut(s)	91, 92, 351, 453
BseMI	GCAATG	1 cut(s)	387
BseSI	GKGCMC	1 cut(s)	79
BseYI	CCCAGC	1 cut(s)	78
BsgI	GTGCAG	1 cut(s)	246
BshFI	GGCC	4 cut(s)	77, 171, 355, 457
BsiSI	CCGG	2 cut(s)	168, 240
BslI	CCNNNNNNNGG	4 cut(s)	91, 92, 351, 453
BsmAI	GTCTC	1 cut(s)	144
BsnI	GGCC	4 cut(s)	77, 171, 355, 457
Bsp119I	TTCGAA	1 cut(s)	123
Bsp120I	GGGCCC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	4 cut(s)	12, 310, 324, 370
BspACI	CCGC	2 cut(s)	278, 444
BspANI	GGCC	4 cut(s)	77, 171, 355, 457
BspLI	GGNNCC	1 cut(s)	77
BspQI	GCTCTTC	1 cut(s)	287
BspT104I	TTCGAA	1 cut(s)	123
BsrBI	CCGCTC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	387
BssMI	GATC	4 cut(s)	12, 310, 324, 370
Bst4CI	ACNGT	3 cut(s)	31, 39, 292
Bst6I	CTCTTC	1 cut(s)	287
BstBI	TTCGAA	1 cut(s)	123
BstKTI	GATC	4 cut(s)	15, 313, 327, 373
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	4 cut(s)	12, 310, 324, 370
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	79
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	4 cut(s)	77, 171, 355, 457
BtsIMutI	CAGTG	1 cut(s)	229
Cfr13I	GGNCC	3 cut(s)	75, 76, 170
Csp6I	GTAC	2 cut(s)	235, 394
CviAII	CATG	3 cut(s)	186, 254, 440
CviJI	RGCY	8 cut(s)	77, 82, 106, 171, 180, 341, 355, 457
CviKI_1	RGCY	8 cut(s)	77, 82, 106, 171, 180, 341, 355, 457
CviQI	GTAC	2 cut(s)	235, 394
DpnI	GATC	4 cut(s)	14, 312, 326, 372
DpnII	GATC	4 cut(s)	12, 310, 324, 370
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Eco147I	AGGCCT	1 cut(s)	457
Eco24I	GRGCYC	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	79
FaeI	CATG	3 cut(s)	189, 257, 443
FatI	CATG	3 cut(s)	185, 253, 439
Fnu4HI	GCNGC	1 cut(s)	444
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	444
FspBI	CTAG	3 cut(s)	215, 357, 377
GluI	GCNGC	1 cut(s)	444
GsaI	CCCAGC	1 cut(s)	82
HaeIII	GGCC	4 cut(s)	77, 171, 355, 457
HapII	CCGG	2 cut(s)	168, 240
Hin1II	CATG	3 cut(s)	189, 257, 443
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HpaII	CCGG	2 cut(s)	168, 240
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	237, 295
Hpy188I	TCNGA	1 cut(s)	337
Hpy188III	TCNNGA	3 cut(s)	148, 314, 322
Hpy8I	GTNNAC	2 cut(s)	237, 295
HpyAV	CCTTC	1 cut(s)	119
HpyCH4III	ACNGT	3 cut(s)	31, 39, 292
HpyCH4V	TGCA	2 cut(s)	227, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	189, 257, 443
Kzo9I	GATC	4 cut(s)	12, 310, 324, 370
LguI	GCTCTTC	1 cut(s)	287
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	7 cut(s)	74, 92, 116, 181, 209, 213, 253
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	3 cut(s)	215, 357, 377
MalI	GATC	4 cut(s)	14, 312, 326, 372
MbiI	CCGCTC	1 cut(s)	280
MboI	GATC	4 cut(s)	12, 310, 324, 370
MboII	GAAGA	4 cut(s)	57, 241, 274, 295
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	1 cut(s)	119
MnlI	CCTC	4 cut(s)	123, 224, 419, 468
MspI	CCGG	2 cut(s)	168, 240
MwoI	GCNNNNNNNGC	1 cut(s)	177
NdeII	GATC	4 cut(s)	12, 310, 324, 370
NlaIII	CATG	3 cut(s)	189, 257, 443
NlaIV	GGNNCC	1 cut(s)	77
NspV	TTCGAA	1 cut(s)	123
PceI	AGGCCT	1 cut(s)	457
PciSI	GCTCTTC	1 cut(s)	287
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PkrI	GCNGC	1 cut(s)	445
PspFI	CCCAGC	1 cut(s)	78
PspN4I	GGNNCC	1 cut(s)	77
PspOMI	GGGCCC	1 cut(s)	75
PspPI	GGNCC	3 cut(s)	75, 76, 170
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	2 cut(s)	236, 395
RsaNI	GTAC	2 cut(s)	235, 394
SapI	GCTCTTC	1 cut(s)	287
SatI	GCNGC	1 cut(s)	444
Sau3AI	GATC	4 cut(s)	12, 310, 324, 370
Sau96I	GGNCC	3 cut(s)	75, 76, 170
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	3 cut(s)	93, 343, 365
SfaNI	GCATC	1 cut(s)	153
SfuI	TTCGAA	1 cut(s)	123
Sse9I	AATT	1 cut(s)	119
SseBI	AGGCCT	1 cut(s)	457
SsiI	CCGC	2 cut(s)	278, 444
SspI	AATATT	1 cut(s)	54
SspMI	CTAG	3 cut(s)	215, 357, 377
StuI	AGGCCT	1 cut(s)	457
TaaI	ACNGT	3 cut(s)	31, 39, 292
TaqI	TCGA	4 cut(s)	115, 123, 261, 387
TasI	AATT	1 cut(s)	119
TauI	GCSGC	1 cut(s)	446
TscAI	CASTG	1 cut(s)	229
TspDTI	ATGAA	3 cut(s)	121, 274, 428
TspRI	CASTG	1 cut(s)	229
XapI	RAATTY	1 cut(s)	119
XspI	CTAG	3 cut(s)	215, 357, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.