Rroxscaffold_5G00379940

Protein of unknown function (DUF563)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001444
Physical Location & Seq
Forward (+)
60143687 .. 60145638
1952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00379940.1

Sequence Viewer

Length: 1380 bp
ATGAAGACGAAGAAGAGGGTTCTGGTAGCAGTGGCTGCTTTGTGCTTGTTCTTCATCGTATTCCAGATCAGTGTCTCATCGACCTCCAGATTTCTTAATAATGCAGCATTTCCAGCTAAGACTCAAGAAACAACTCGTGTGGAATCAAAGCTGATTAGTAAACAACTCCATCATGACCCACCGGAGTCTTTGGAACTTCGTTTGGAGAGTCCGATCATCTGTGACCGAACCTCTATACGTTATGATATCTGCTCAATCAACGGCCCGACAGTTTTGGATCCGACCACATCGACTTTCTTCACTATGAACTCTACCGAACCGCCATTGGTAGAAAGAATCAGACCCTATCCTCGAAAATTCGAAGACCTCATAATGGCTGATATCAAGAACTTCACACTCACTGTCGGACCACGAATCCCAATGTGTAGAGTTCAACACAATGCTCCTGCCCTAGTATTCACCGCCGGTGGATACACCGGAAACTTTTGGCATGACTTCAACGATGGATTCATCCCTCTCTTTATCACCGCCAACACCATATTCCCAGATCAAGACTTCGTCATTGTGGTTTCCGAAGCTCCCAAGTGGTGGCCTAGTAAGTATGCCGATTTACTACGCATGTTCACCAATCATCCTATTGTCAACCTAGGAAGTGATACCACCACCCATTGTTTTCCTTCTGCCAAGCTAGGCCTTATATCACATGGCTTCATGATCATAAACCAAACATTAATACCCAACTCAAAGACATACATGAATTTTCGTGAGCTCCTTGGCAAAGCCTATAACCAACTAGCCCAAATCCAAACCAAAGTTTTCCCCTCTAAGCCCACAAATCCTCGGCCCATACTTGTTTTGGCTAGCCGACGTCATGCCACTGGACGCGCGATCATGAACCAAGCCCAAGTTATTCGTTTGATCAAGAAAGTAGGTTTTGATGTGGTGGTATTTGAGCCTAAAACCAAAACCTCATTGCAAGAATCTTATGCATTACTGAATTCAAGCCATGCTTTTGTTGGGGTTCATGGAGCTGCACTTACGCACTCATTGTTCCTCCGGCCAGGCGCGGTGTTCGTGCAGGTGGTGCCAATAGGAATAGGCTGGGGGGCGGAAGCGTTTTTCGGGAGAGTAGCAAAAGGGTTGAATTTGGAGTATATTGAGTACAAAATTGGTGTGGAAGAGAGTAGCTTGGTGGACAAGTATGGGAAGGACAGTTTGTTGGTTAGGGATCCATTTGCTCTTCAAAAAAAGGGCTGGCCCCCGGAGGTTATGAACACTTACTTGAAAGAACAGAATGTGAAACTGGATTTGGTTAGGTTCAAGAGATATTTGAAGAAAGCTTTTAAGAAAGCCAAGAGATTTATGGACAATGAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
DUF563

Protein Analysis

459

Amino Acids

51.81

Weight (kDa)

9.65

Isoelectric Point (pI)

29.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 163 - 359 1.3e-14 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1069
AatII GACGTC 1 cut(s) 871
Acc36I ACCTGC 1 cut(s) 1069
AccB1I GGYRCC 1 cut(s) 1084
AccB7I CCANNNNNTGG 1 cut(s) 588
AccII CGCG 3 cut(s) 885, 887, 1067
AciI CCGC 5 cut(s) 320, 462, 528, 1067, 1109
AclWI GGATC 4 cut(s) 272, 285, 1223, 1236
AcoI YGGCCR 1 cut(s) 1058
AcsI RAATTY 4 cut(s) 356, 757, 997, 1144
AcyI GRCGYC 1 cut(s) 868
AfaI GTAC 1 cut(s) 1163
AfiI CCNNNNNNNGG 2 cut(s) 373, 588
AgsI TTSAA 8 cut(s) 434, 499, 1002, 1144, 1244, 1285, 1321, 1333
AjnI CCWGG 1 cut(s) 1060
AjuI GAANNNNNNNTTGG 4 cut(s) 524, 556, 1292, 1324
AluBI AGCT 8 cut(s) 116, 151, 578, 688, 769, 1031, 1188, 1340
AluI AGCT 8 cut(s) 116, 151, 578, 688, 769, 1031, 1188, 1340
Alw21I GWGCWC 1 cut(s) 771
Alw26I GTCTC 1 cut(s) 79
AlwI GGATC 4 cut(s) 272, 285, 1223, 1236
AlwNI CAGNNNCTG 1 cut(s) 35
AoxI GGCC 6 cut(s) 262, 590, 691, 842, 1058, 1256
ApeKI GCWGC 3 cut(s) 35, 104, 1031
ApoI RAATTY 4 cut(s) 356, 757, 997, 1144
AseI ATTAAT 1 cut(s) 731
AspA2I CCTAGG 1 cut(s) 646
AspLEI GCGC 2 cut(s) 887, 1067
AspS9I GGNCC 4 cut(s) 263, 407, 843, 1257
AsuC2I CCSGG 1 cut(s) 1262
AsuHPI GGTGA 3 cut(s) 451, 517, 616
AsuII TTCGAA 1 cut(s) 360
AsuNHI GCTAGC 1 cut(s) 860
AvaII GGWCC 1 cut(s) 407
AvrII CCTAGG 1 cut(s) 646
BamHI GGATCC 2 cut(s) 277, 1228
BanI GGYRCC 1 cut(s) 1084
BanII GRGCYC 1 cut(s) 771
BauI CACGAG 1 cut(s) 135
BbsI GAAGAC 2 cut(s) 11, 369
Bbv12I GWGCWC 1 cut(s) 771
BbvI GCAGC 3 cut(s) 22, 116, 1018
BccI CCATC 2 cut(s) 177, 497
BceAI ACGGC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 1062
BciVI GTATCC 1 cut(s) 464
BclI TGATCA 2 cut(s) 714, 918
BcnI CCSGG 1 cut(s) 1262
BcoDI GTCTC 1 cut(s) 79
BfaI CTAG 6 cut(s) 452, 594, 647, 689, 794, 861
BfuAI ACCTGC 1 cut(s) 1069
BfuI GTATCC 1 cut(s) 464
BisI GCNGC 3 cut(s) 36, 105, 1032
BlnI CCTAGG 1 cut(s) 646
BlsI GCNGC 3 cut(s) 37, 106, 1033
Bme1390I CCNGG 2 cut(s) 1062, 1262
Bme18I GGWCC 1 cut(s) 407
BmgT120I GGNCC 4 cut(s) 263, 407, 843, 1257
BmiI GGNNCC 4 cut(s) 279, 1086, 1230, 1259
BmrFI CCNGG 2 cut(s) 1062, 1262
BmtI GCTAGC 1 cut(s) 864
BpiI GAAGAC 2 cut(s) 11, 369
BpmI CTGGAG 1 cut(s) 70
Bpu14I TTCGAA 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 1262
BsaHI GRCGYC 1 cut(s) 868
BsaJI CCNNGG 4 cut(s) 646, 772, 839, 1260
BsaWI WCCGGW 2 cut(s) 181, 476
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 588
Bse118I RCCGGY 1 cut(s) 464
Bse1I ACTGG 2 cut(s) 883, 1308
Bse3DI GCAATG 1 cut(s) 971
BseBI CCWGG 1 cut(s) 1062
BseDI CCNNGG 4 cut(s) 646, 772, 839, 1260
BseGI GGATG 2 cut(s) 510, 631
BseLI CCNNNNNNNGG 2 cut(s) 373, 588
BseMI GCAATG 1 cut(s) 971
BseNI ACTGG 2 cut(s) 883, 1308
BseXI GCAGC 3 cut(s) 22, 116, 1018
BseYI CCCAGC 1 cut(s) 1101
BsgI GTGCAG 2 cut(s) 1017, 1097
Bsh1236I CGCG 3 cut(s) 885, 887, 1067
BshFI GGCC 6 cut(s) 264, 592, 693, 844, 1060, 1258
BshNI GGYRCC 1 cut(s) 1084
BsiHKAI GWGCWC 1 cut(s) 771
BsiSI CCGG 5 cut(s) 182, 465, 477, 1057, 1262
BslI CCNNNNNNNGG 2 cut(s) 373, 588
BsmAI GTCTC 1 cut(s) 79
BsnI GGCC 6 cut(s) 264, 592, 693, 844, 1060, 1258
Bsp119I TTCGAA 1 cut(s) 360
Bsp1286I GDGCHC 1 cut(s) 771
Bsp143I GATC 8 cut(s) 66, 213, 277, 547, 714, 888, 918, 1228
BspACI CCGC 5 cut(s) 320, 462, 528, 1067, 1109
BspANI GGCC 6 cut(s) 264, 592, 693, 844, 1060, 1258
BspFNI CGCG 3 cut(s) 885, 887, 1067
BspHI TCATGA 3 cut(s) 172, 711, 891
BspLI GGNNCC 4 cut(s) 279, 1086, 1230, 1259
BspMI ACCTGC 1 cut(s) 1069
BspOI GCTAGC 1 cut(s) 864
BspPI GGATC 4 cut(s) 272, 285, 1223, 1236
BspQI GCTCTTC 1 cut(s) 1245
BspT104I TTCGAA 1 cut(s) 360
BspT107I GGYRCC 1 cut(s) 1084
BsrDI GCAATG 1 cut(s) 971
BsrFI RCCGGY 1 cut(s) 464
BsrI ACTGG 2 cut(s) 883, 1308
BssAI RCCGGY 1 cut(s) 464
BssECI CCNNGG 4 cut(s) 646, 772, 839, 1260
BssMI GATC 8 cut(s) 66, 213, 277, 547, 714, 888, 918, 1228
BssNI GRCGYC 1 cut(s) 868
BssSI CACGAG 1 cut(s) 135
BssT1I CCWWGG 2 cut(s) 646, 772
Bst2BI CACGAG 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 1062
Bst4CI ACNGT 3 cut(s) 271, 403, 1214
Bst6I CTCTTC 3 cut(s) 8, 1173, 1245
BstACI GRCGYC 1 cut(s) 868
BstAPI GCANNNNNTGC 2 cut(s) 35, 1084
BstBI TTCGAA 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 862, 1256
BstDEI CTNAG 2 cut(s) 117, 825
BstF5I GGATG 2 cut(s) 510, 631
BstFNI CGCG 3 cut(s) 885, 887, 1067
BstHHI GCGC 2 cut(s) 887, 1067
BstKTI GATC 8 cut(s) 69, 216, 280, 550, 717, 891, 921, 1231
BstMAI GTCTC 1 cut(s) 79
BstMBI GATC 8 cut(s) 66, 213, 277, 547, 714, 888, 918, 1228
BstMWI GCNNNNNNNGC 3 cut(s) 35, 113, 1084
BstNI CCWGG 1 cut(s) 1062
BstNSI RCATGY 1 cut(s) 622
BstSCI CCNGG 2 cut(s) 1060, 1260
BstUI CGCG 3 cut(s) 885, 887, 1067
BstV1I GCAGC 3 cut(s) 22, 116, 1018
BstV2I GAAGAC 2 cut(s) 11, 369
BstX2I RGATCY 2 cut(s) 277, 1228
BstYI RGATCY 2 cut(s) 277, 1228
BsuI GTATCC 1 cut(s) 464
BsuRI GGCC 6 cut(s) 264, 592, 693, 844, 1060, 1258
BtsCI GGATG 2 cut(s) 510, 631
BtsI GCAGTG 1 cut(s) 36
BtsIMutI CAGTG 4 cut(s) 36, 76, 399, 876
BveI ACCTGC 1 cut(s) 1069
Cac8I GCNNGC 2 cut(s) 862, 1256
CaiI CAGNNNCTG 1 cut(s) 35
CciI TCATGA 3 cut(s) 172, 711, 891
CfoI GCGC 2 cut(s) 887, 1067
Cfr10I RCCGGY 1 cut(s) 464
Cfr13I GGNCC 4 cut(s) 263, 407, 843, 1257
CseI GACGC 1 cut(s) 891
Csp6I GTAC 1 cut(s) 1162
CspCI CAANNNNNGTGG 2 cut(s) 120, 155
CviQI GTAC 1 cut(s) 1162
DdeI CTNAG 2 cut(s) 117, 825
DpnI GATC 8 cut(s) 68, 215, 279, 549, 716, 890, 920, 1230
DpnII GATC 8 cut(s) 66, 213, 277, 547, 714, 888, 918, 1228
EaeI YGGCCR 1 cut(s) 1058
Eam1104I CTCTTC 3 cut(s) 8, 1173, 1245
EarI CTCTTC 3 cut(s) 8, 1173, 1245
EciI GGCGGA 1 cut(s) 1124
Ecl136II GAGCTC 1 cut(s) 769
Eco130I CCWWGG 2 cut(s) 646, 772
Eco147I AGGCCT 1 cut(s) 693
Eco24I GRGCYC 1 cut(s) 771
Eco32I GATATC 2 cut(s) 247, 382
Eco47I GGWCC 1 cut(s) 407
Eco53kI GAGCTC 1 cut(s) 769
EcoICRI GAGCTC 1 cut(s) 769
EcoRI GAATTC 1 cut(s) 997
EcoRII CCWGG 1 cut(s) 1060
EcoRV GATATC 2 cut(s) 247, 382
EcoT14I CCWWGG 2 cut(s) 646, 772
EcoT22I ATGCAT 1 cut(s) 991
EcoT38I GRGCYC 1 cut(s) 771
ErhI CCWWGG 2 cut(s) 646, 772
FalI AAGNNNNNCTT 2 cut(s) 994, 1026
FbaI TGATCA 2 cut(s) 714, 918
Fnu4HI GCNGC 3 cut(s) 36, 105, 1032
FokI GGATG 2 cut(s) 497, 618
FriOI GRGCYC 1 cut(s) 771
Fsp4HI GCNGC 3 cut(s) 36, 105, 1032
FspBI CTAG 6 cut(s) 452, 594, 647, 689, 794, 861
GlaI GCGC 2 cut(s) 886, 1066
GluI GCNGC 3 cut(s) 36, 105, 1032
GsaI CCCAGC 1 cut(s) 1105
GsuI CTGGAG 1 cut(s) 70
HaeIII GGCC 6 cut(s) 264, 592, 693, 844, 1060, 1258
HapII CCGG 5 cut(s) 182, 465, 477, 1057, 1262
HgaI GACGC 1 cut(s) 891
HhaI GCGC 2 cut(s) 887, 1067
Hin1I GRCGYC 1 cut(s) 868
Hin6I GCGC 2 cut(s) 885, 1065
HinP1I GCGC 2 cut(s) 885, 1065
HincII GTYRAC 1 cut(s) 643
HindII GTYRAC 1 cut(s) 643
HindIII AAGCTT 1 cut(s) 1338
HinfI GANTC 8 cut(s) 121, 143, 185, 208, 336, 414, 507, 980
HpaII CCGG 5 cut(s) 182, 465, 477, 1057, 1262
HphI GGTGA 3 cut(s) 451, 517, 616
Hpy166II GTNNAC 4 cut(s) 161, 624, 643, 1195
Hpy188I TCNGA 5 cut(s) 213, 282, 341, 407, 574
Hpy8I GTNNAC 4 cut(s) 161, 624, 643, 1195
Hpy99I CGWCG 1 cut(s) 870
HpyAV CCTTC 2 cut(s) 687, 1201
HpyCH4III ACNGT 3 cut(s) 271, 403, 1214
HpyCH4IV ACGT 2 cut(s) 238, 868
HpyCH4V TGCA 5 cut(s) 104, 976, 989, 1034, 1078
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 113, 1084
HpyF3I CTNAG 2 cut(s) 117, 825
HpySE526I ACGT 2 cut(s) 238, 868
Hsp92I GRCGYC 1 cut(s) 868
HspAI GCGC 2 cut(s) 885, 1065
Ksp22I TGATCA 2 cut(s) 714, 918
Kzo9I GATC 8 cut(s) 66, 213, 277, 547, 714, 888, 918, 1228
LguI GCTCTTC 1 cut(s) 1245
LmnI GCTCC 4 cut(s) 448, 583, 774, 1028
Lsp1109I GCAGC 3 cut(s) 22, 116, 1018
MaeI CTAG 6 cut(s) 452, 594, 647, 689, 794, 861
MaeII ACGT 2 cut(s) 238, 868
MaeIII GTNAC 1 cut(s) 221
MalI GATC 8 cut(s) 68, 215, 279, 549, 716, 890, 920, 1230
MboI GATC 8 cut(s) 66, 213, 277, 547, 714, 888, 918, 1228
MboII GAAGA 9 cut(s) 16, 22, 25, 43, 289, 374, 1190, 1232, 1345
MflI RGATCY 2 cut(s) 277, 1228
MhlI GDGCHC 1 cut(s) 771
MluCI AATT 5 cut(s) 356, 757, 997, 1144, 1167
MlyI GAGTC 3 cut(s) 115, 194, 217
MmeI TCCRAC 2 cut(s) 305, 385
Mph1103I ATGCAT 1 cut(s) 991
MseI TTAA 3 cut(s) 96, 731, 1344
MspI CCGG 5 cut(s) 182, 465, 477, 1057, 1262
MspR9I CCNGG 2 cut(s) 1062, 1262
MvaI CCWGG 1 cut(s) 1062
MvnI CGCG 3 cut(s) 885, 887, 1067
MwoI GCNNNNNNNGC 3 cut(s) 35, 113, 1084
NciI CCSGG 1 cut(s) 1262
NdeII GATC 8 cut(s) 66, 213, 277, 547, 714, 888, 918, 1228
NheI GCTAGC 1 cut(s) 860
NlaIV GGNNCC 4 cut(s) 279, 1086, 1230, 1259
NmeAIII GCCGAG 1 cut(s) 820
NmuCI GTSAC 1 cut(s) 221
NsiI ATGCAT 1 cut(s) 991
NspI RCATGY 1 cut(s) 622
NspV TTCGAA 1 cut(s) 360
PagI TCATGA 3 cut(s) 172, 711, 891
PaqCI CACCTGC 1 cut(s) 1069
PceI AGGCCT 1 cut(s) 693
PciSI GCTCTTC 1 cut(s) 1245
PfeI GAWTC 5 cut(s) 143, 336, 414, 507, 980
PflFI GACNNNGTC 1 cut(s) 557
PflMI CCANNNNNTGG 1 cut(s) 588
PkrI GCNGC 3 cut(s) 37, 106, 1033
PleI GAGTC 3 cut(s) 115, 193, 216
PpsI GAGTC 3 cut(s) 115, 193, 216
PshBI ATTAAT 1 cut(s) 731
Psp124BI GAGCTC 1 cut(s) 771
Psp6I CCWGG 1 cut(s) 1060
PspFI CCCAGC 1 cut(s) 1101
PspGI CCWGG 1 cut(s) 1060
PspN4I GGNNCC 4 cut(s) 279, 1086, 1230, 1259
PspPI GGNCC 4 cut(s) 263, 407, 843, 1257
PstNI CAGNNNCTG 1 cut(s) 35
PsuI RGATCY 2 cut(s) 277, 1228
PsyI GACNNNGTC 1 cut(s) 557
RsaI GTAC 1 cut(s) 1163
RsaNI GTAC 1 cut(s) 1162
SacI GAGCTC 1 cut(s) 771
SapI GCTCTTC 1 cut(s) 1245
SaqAI TTAA 3 cut(s) 96, 731, 1344
SatI GCNGC 3 cut(s) 36, 105, 1032
Sau3AI GATC 8 cut(s) 66, 213, 277, 547, 714, 888, 918, 1228
Sau96I GGNCC 4 cut(s) 263, 407, 843, 1257
SchI GAGTC 3 cut(s) 115, 194, 217
ScrFI CCNGG 2 cut(s) 1062, 1262
SduI GDGCHC 1 cut(s) 771
SfuI TTCGAA 1 cut(s) 360
SgrAI CRCCGGYG 1 cut(s) 464
SinI GGWCC 1 cut(s) 407
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
Sse9I AATT 5 cut(s) 356, 757, 997, 1144, 1167
SseBI AGGCCT 1 cut(s) 693
SsiI CCGC 5 cut(s) 320, 462, 528, 1067, 1109
SspMI CTAG 6 cut(s) 452, 594, 647, 689, 794, 861
SstI GAGCTC 1 cut(s) 771
StuI AGGCCT 1 cut(s) 693
StyD4I CCNGG 2 cut(s) 1060, 1260
StyI CCWWGG 2 cut(s) 646, 772
TaaI ACNGT 3 cut(s) 271, 403, 1214
TaiI ACGT 2 cut(s) 241, 871
TaqI TCGA 4 cut(s) 80, 290, 352, 360
TaqII GACCGA 1 cut(s) 240
TasI AATT 5 cut(s) 356, 757, 997, 1144, 1167
TatI WGTACW 1 cut(s) 1161
TfiI GAWTC 5 cut(s) 143, 336, 414, 507, 980
Tru1I TTAA 3 cut(s) 96, 731, 1344
Tru9I TTAA 3 cut(s) 96, 731, 1344
TscAI CASTG 4 cut(s) 36, 76, 406, 883
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 3 cut(s) 35, 104, 1031
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 9 cut(s) 17, 43, 320, 499, 700, 770, 908, 1013, 1286
TspRI CASTG 4 cut(s) 36, 76, 406, 883
Tth111I GACNNNGTC 1 cut(s) 557
Van91I CCANNNNNTGG 1 cut(s) 588
VpaK11BI GGWCC 1 cut(s) 407
VspI ATTAAT 1 cut(s) 731
XapI RAATTY 4 cut(s) 356, 757, 997, 1144
XceI RCATGY 1 cut(s) 622
XcmI CCANNNNNNNNNTGG 3 cut(s) 853, 1013, 1360
XmaJI CCTAGG 1 cut(s) 646
XspI CTAG 6 cut(s) 452, 594, 647, 689, 794, 861
ZraI GACGTC 1 cut(s) 869
Zsp2I ATGCAT 1 cut(s) 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.