Rroxscaffold_5G00379950

Protein of unknown function (DUF563)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001444
Physical Location & Seq
Forward (+)
60148497 .. 60149582
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00379950.1

Sequence Viewer

Length: 1086 bp
ATGGACTTATCCCAAATTGCATACCTGGAAGTGGAAAGAATCCGACCTTACCCTCGAAAATTCGAAGGTTTCATAATGGCCCAGATCAAGGACCTCACACTCGCTGTTGGCCCACGAAGCCCACCGTGTAAAGTCCAACACAATGCTCCGGCCCTAGTATTCGCCGCCGGTGGATACACCGGAAACTTTTGGCATGACTTCAATGATGGATTTATCCCGCTCTTTATCACCGCCAACACACTCTTCCCAGATCAAGACTTCGTGGTCGTGGTTTCCCAAGCTCCAAAGTGGTGGGTTTATAAGTATGCCGATTTACTACGCATATTCACCAAGCACCCTATTATTACCATGCGAAATGATGCCAGTCATGCCACCACCCATTGTTTTCCTTCTGCCAATCTAGGCCTTATATCACATGGTTTCATGACCATAAACCAAACACTAATACCTCGTGCAAAAACGTTTCTGCATTTTCGAGGGCTCCTAGACAAAGCATATAAGCGAAGGTCCCAACCTCAAATTCTCTCCTCTGAGCGGAGAAAACCCCGGCCACGCCTTGTTTTGGCGAGCCGGAATCATGCAACTGGACGCAGGATCGTTAACCAGGTTCAAGTAGTTCGTTTGGTAAAGAAAGTGGGGTTTGATGTGATTGTGTTTGAGCCTAAGGCCAATAACTCATTGCATGAGTCTTATGCGTTACTTAATTCAAGCCATGCTTTTGTTGGGGTACATGGCGCTGCACTTACACACTCATTGTTCCTCCGGCCGGGTTCAGTGTTCGTACAGGTGGTGCCGATTGGGGTGGACTGGGCGGCGAATGCGTGTTTCGGGAGAGTGGCGAAGGGGCTGAGGTTGGAGTATTTTGAGTACAAGATCGGAGTGAAAGAGAGTAGCTTGGTGGACAAGTATGGTAATGATAGTTTGGTGGTAAAAGATCCATTTGGTCTCCAGAAAATGGGGTGGCGTGCTGAGGTTATGGACATTTACTTGAAGGAGCAGAATGTGAAGCTGGATTTGGTTAGGTTCAAGGGGCATTTGAAGCAAGCGTTTAAGAAGGCTAAGAAATTTATGGACATCAATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
DUF563

Protein Analysis

361

Amino Acids

40.94

Weight (kDa)

9.96

Isoelectric Point (pI)

30.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 63 - 261 2.1e-14 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
AasI GACNNNNNNGTC 1 cut(s) 263
AccB1I GGYRCC 1 cut(s) 790
AccB7I CCANNNNNTGG 1 cut(s) 955
AccBSI CCGCTC 2 cut(s) 220, 535
AciI CCGC 5 cut(s) 165, 218, 231, 535, 812
AclI AACGTT 1 cut(s) 461
AclWI GGATC 2 cut(s) 602, 929
AcoI YGGCCR 2 cut(s) 548, 764
AcsI RAATTY 3 cut(s) 59, 519, 1064
AfaI GTAC 3 cut(s) 729, 783, 869
AfiI CCNNNNNNNGG 6 cut(s) 31, 88, 534, 562, 766, 955
AgsI TTSAA 6 cut(s) 202, 611, 708, 991, 1027, 1039
AjnI CCWGG 2 cut(s) 24, 603
AjuI GAANNNNNNNTTGG 6 cut(s) 227, 259, 504, 536, 998, 1030
AluBI AGCT 3 cut(s) 281, 894, 1009
AluI AGCT 3 cut(s) 281, 894, 1009
Alw26I GTCTC 1 cut(s) 950
AlwI GGATC 2 cut(s) 602, 929
AoxI GGCC 7 cut(s) 78, 109, 150, 403, 548, 666, 764
ApeKI GCWGC 1 cut(s) 737
ApoI RAATTY 3 cut(s) 59, 519, 1064
AspLEI GCGC 1 cut(s) 737
AspS9I GGNCC 5 cut(s) 79, 91, 110, 151, 507
AsuC2I CCSGG 2 cut(s) 547, 768
AsuHPI GGTGA 2 cut(s) 220, 319
AsuII TTCGAA 1 cut(s) 63
AvaII GGWCC 2 cut(s) 91, 507
AxyI CCTNAGG 1 cut(s) 663
BanI GGYRCC 1 cut(s) 790
BanII GRGCYC 1 cut(s) 483
BauI CACGAG 1 cut(s) 450
BbvCI CCTCAGC 2 cut(s) 848, 969
BbvI GCAGC 1 cut(s) 724
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 2 cut(s) 26, 605
BciVI GTATCC 1 cut(s) 167
BcnI CCSGG 2 cut(s) 547, 768
BcoDI GTCTC 1 cut(s) 950
BfaI CTAG 3 cut(s) 155, 401, 485
BfoI RGCGCY 1 cut(s) 738
BfuI GTATCC 1 cut(s) 167
BisI GCNGC 3 cut(s) 165, 738, 813
BlsI GCNGC 3 cut(s) 166, 739, 814
Bme1390I CCNGG 4 cut(s) 26, 547, 605, 768
Bme18I GGWCC 2 cut(s) 91, 507
BmgT120I GGNCC 5 cut(s) 79, 91, 110, 151, 507
BmiI GGNNCC 3 cut(s) 482, 509, 792
BmrFI CCNGG 4 cut(s) 26, 547, 605, 768
BmrI ACTGGG 1 cut(s) 817
BmsI GCATC 1 cut(s) 349
BmuI ACTGGG 1 cut(s) 817
BpmI CTGGAG 1 cut(s) 932
Bpu10I CCTNAGC 2 cut(s) 848, 969
Bpu14I TTCGAA 1 cut(s) 63
BpuMI CCSGG 2 cut(s) 547, 768
BsaI GGTCTC 1 cut(s) 950
BsaJI CCNNGG 1 cut(s) 545
BsaWI WCCGGW 1 cut(s) 179
Bsc4I CCNNNNNNNGG 6 cut(s) 31, 88, 534, 562, 766, 955
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 3 cut(s) 363, 589, 812
Bse21I CCTNAGG 1 cut(s) 663
Bse3DI GCAATG 1 cut(s) 677
BseBI CCWGG 2 cut(s) 26, 605
BseDI CCNNGG 1 cut(s) 545
BseLI CCNNNNNNNGG 6 cut(s) 31, 88, 534, 562, 766, 955
BseMI GCAATG 1 cut(s) 677
BseMII CTCAG 3 cut(s) 522, 839, 960
BseNI ACTGG 3 cut(s) 363, 589, 812
BseRI GAGGAG 1 cut(s) 517
BseX3I CGGCCG 1 cut(s) 764
BseXI GCAGC 1 cut(s) 724
BsgI GTGCAG 1 cut(s) 723
Bsh1285I CGRYCG 1 cut(s) 767
BshFI GGCC 7 cut(s) 80, 111, 152, 405, 550, 668, 766
BshNI GGYRCC 1 cut(s) 790
BsiEI CGRYCG 1 cut(s) 767
BsiSI CCGG 7 cut(s) 149, 168, 180, 547, 571, 763, 767
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 6 cut(s) 31, 88, 534, 562, 766, 955
BsmAI GTCTC 1 cut(s) 950
BsmFI GGGAC 1 cut(s) 493
BsmI GAATGC 1 cut(s) 823
BsnI GGCC 7 cut(s) 80, 111, 152, 405, 550, 668, 766
Bso31I GGTCTC 1 cut(s) 950
Bsp119I TTCGAA 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 483
Bsp143I GATC 5 cut(s) 84, 250, 594, 873, 934
BspACI CCGC 5 cut(s) 165, 218, 231, 535, 812
BspANI GGCC 7 cut(s) 80, 111, 152, 405, 550, 668, 766
BspCNI CTCAG 3 cut(s) 523, 840, 961
BspHI TCATGA 1 cut(s) 423
BspLI GGNNCC 3 cut(s) 482, 509, 792
BspPI GGATC 2 cut(s) 602, 929
BspT104I TTCGAA 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 790
BspTNI GGTCTC 1 cut(s) 950
BsrBI CCGCTC 2 cut(s) 220, 535
BsrDI GCAATG 1 cut(s) 677
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 3 cut(s) 363, 589, 812
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 545
BssMI GATC 5 cut(s) 84, 250, 594, 873, 934
BssSI CACGAG 1 cut(s) 450
Bst2BI CACGAG 1 cut(s) 450
Bst2UI CCWGG 2 cut(s) 26, 605
Bst4CI ACNGT 1 cut(s) 126
Bst6I CTCTTC 1 cut(s) 248
BstBI TTCGAA 1 cut(s) 63
BstC8I GCNNGC 3 cut(s) 568, 966, 1044
BstDEI CTNAG 5 cut(s) 531, 663, 848, 969, 1059
BstH2I RGCGCY 1 cut(s) 738
BstHHI GCGC 1 cut(s) 737
BstKTI GATC 5 cut(s) 87, 253, 597, 876, 937
BstMAI GTCTC 1 cut(s) 950
BstMBI GATC 5 cut(s) 84, 250, 594, 873, 934
BstMCI CGRYCG 1 cut(s) 767
BstMWI GCNNNNNNNGC 4 cut(s) 117, 368, 818, 1039
BstNI CCWGG 2 cut(s) 26, 605
BstSCI CCNGG 4 cut(s) 24, 545, 603, 766
BstV1I GCAGC 1 cut(s) 724
BstX2I RGATCY 1 cut(s) 934
BstXI CCANNNNNNTGG 1 cut(s) 291
BstYI RGATCY 1 cut(s) 934
BstZI CGGCCG 1 cut(s) 764
Bsu36I CCTNAGG 1 cut(s) 663
BsuI GTATCC 1 cut(s) 167
BsuRI GGCC 7 cut(s) 80, 111, 152, 405, 550, 668, 766
BtsIMutI CAGTG 1 cut(s) 780
Cac8I GCNNGC 3 cut(s) 568, 966, 1044
CciI TCATGA 1 cut(s) 423
CfoI GCGC 1 cut(s) 737
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 5 cut(s) 79, 91, 110, 151, 507
CseI GACGC 1 cut(s) 597
CsiI ACCWGGT 1 cut(s) 603
Csp6I GTAC 3 cut(s) 728, 782, 868
CviAII CATG 9 cut(s) 194, 349, 368, 416, 424, 578, 683, 713, 731
CviQI GTAC 3 cut(s) 728, 782, 868
DdeI CTNAG 5 cut(s) 531, 663, 848, 969, 1059
DpnI GATC 5 cut(s) 86, 252, 596, 875, 936
DpnII GATC 5 cut(s) 84, 250, 594, 873, 934
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
EaeI YGGCCR 2 cut(s) 548, 764
EagI CGGCCG 1 cut(s) 764
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
EclXI CGGCCG 1 cut(s) 764
Eco147I AGGCCT 1 cut(s) 405
Eco24I GRGCYC 1 cut(s) 483
Eco31I GGTCTC 1 cut(s) 950
Eco47I GGWCC 2 cut(s) 91, 507
Eco52I CGGCCG 1 cut(s) 764
Eco81I CCTNAGG 1 cut(s) 663
EcoO109I RGGNCCY 2 cut(s) 91, 507
EcoRII CCWGG 2 cut(s) 24, 603
EcoT38I GRGCYC 1 cut(s) 483
FaeI CATG 9 cut(s) 197, 352, 371, 419, 427, 581, 686, 716, 734
FalI AAGNNNNNCTT 2 cut(s) 700, 732
FaqI GGGAC 1 cut(s) 493
FatI CATG 9 cut(s) 193, 348, 367, 415, 423, 577, 682, 712, 730
FauI CCCGC 1 cut(s) 225
Fnu4HI GCNGC 3 cut(s) 165, 738, 813
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 3 cut(s) 165, 738, 813
FspBI CTAG 3 cut(s) 155, 401, 485
GlaI GCGC 1 cut(s) 736
GluI GCNGC 3 cut(s) 165, 738, 813
GsuI CTGGAG 1 cut(s) 932
HaeII RGCGCY 1 cut(s) 738
HaeIII GGCC 7 cut(s) 80, 111, 152, 405, 550, 668, 766
HapII CCGG 7 cut(s) 149, 168, 180, 547, 571, 763, 767
HgaI GACGC 1 cut(s) 597
HhaI GCGC 1 cut(s) 737
Hin1II CATG 9 cut(s) 197, 352, 371, 419, 427, 581, 686, 716, 734
Hin6I GCGC 1 cut(s) 735
HinP1I GCGC 1 cut(s) 735
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HinfI GANTC 3 cut(s) 39, 574, 686
HpaI GTTAAC 1 cut(s) 601
HpaII CCGG 7 cut(s) 149, 168, 180, 547, 571, 763, 767
HphI GGTGA 2 cut(s) 220, 319
Hpy166II GTNNAC 3 cut(s) 601, 805, 901
Hpy188I TCNGA 3 cut(s) 44, 532, 878
Hpy188III TCNNGA 4 cut(s) 254, 424, 829, 949
Hpy8I GTNNAC 3 cut(s) 601, 805, 901
HpyAV CCTTC 6 cut(s) 59, 399, 498, 835, 985, 1048
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 1 cut(s) 461
HpyCH4V TGCA 6 cut(s) 20, 455, 469, 581, 682, 740
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 368, 818, 1039
HpyF3I CTNAG 5 cut(s) 531, 663, 848, 969, 1059
HpySE526I ACGT 1 cut(s) 461
Hsp92II CATG 9 cut(s) 197, 352, 371, 419, 427, 581, 686, 716, 734
HspAI GCGC 1 cut(s) 735
KspAI GTTAAC 1 cut(s) 601
Kzo9I GATC 5 cut(s) 84, 250, 594, 873, 934
LmnI GCTCC 4 cut(s) 151, 286, 486, 994
Lsp1109I GCAGC 1 cut(s) 724
LweI GCATC 1 cut(s) 349
MabI ACCWGGT 1 cut(s) 603
MaeI CTAG 3 cut(s) 155, 401, 485
MaeII ACGT 1 cut(s) 461
MaeIII GTNAC 1 cut(s) 696
MalI GATC 5 cut(s) 86, 252, 596, 875, 936
MbiI CCGCTC 2 cut(s) 220, 535
MboI GATC 5 cut(s) 84, 250, 594, 873, 934
MboII GAAGA 1 cut(s) 235
MflI RGATCY 1 cut(s) 934
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 5 cut(s) 15, 59, 519, 703, 1064
MlyI GAGTC 1 cut(s) 695
MmeI TCCRAC 3 cut(s) 67, 160, 834
MnlI CCTC 9 cut(s) 63, 104, 459, 470, 525, 538, 770, 843, 964
MseI TTAA 3 cut(s) 600, 702, 1050
MspI CCGG 7 cut(s) 149, 168, 180, 547, 571, 763, 767
MspR9I CCNGG 4 cut(s) 26, 547, 605, 768
Mva1269I GAATGC 1 cut(s) 823
MvaI CCWGG 2 cut(s) 26, 605
MwoI GCNNNNNNNGC 4 cut(s) 117, 368, 818, 1039
NciI CCSGG 2 cut(s) 547, 768
NdeII GATC 5 cut(s) 84, 250, 594, 873, 934
NlaIII CATG 9 cut(s) 197, 352, 371, 419, 427, 581, 686, 716, 734
NlaIV GGNNCC 3 cut(s) 482, 509, 792
NspV TTCGAA 1 cut(s) 63
PagI TCATGA 1 cut(s) 423
PceI AGGCCT 1 cut(s) 405
PctI GAATGC 1 cut(s) 823
PfeI GAWTC 2 cut(s) 39, 574
PflMI CCANNNNNTGG 1 cut(s) 955
PkrI GCNGC 3 cut(s) 166, 739, 814
PleI GAGTC 1 cut(s) 694
PpsI GAGTC 1 cut(s) 694
PpuMI RGGWCCY 2 cut(s) 91, 507
PsiI TTATAA 1 cut(s) 300
Psp1406I AACGTT 1 cut(s) 461
Psp5II RGGWCCY 2 cut(s) 91, 507
Psp6I CCWGG 2 cut(s) 24, 603
PspGI CCWGG 2 cut(s) 24, 603
PspN4I GGNNCC 3 cut(s) 482, 509, 792
PspPI GGNCC 5 cut(s) 79, 91, 110, 151, 507
PspPPI RGGWCCY 2 cut(s) 91, 507
PsuI RGATCY 1 cut(s) 934
RsaI GTAC 3 cut(s) 729, 783, 869
RsaNI GTAC 3 cut(s) 728, 782, 868
SaqAI TTAA 3 cut(s) 600, 702, 1050
SatI GCNGC 3 cut(s) 165, 738, 813
Sau3AI GATC 5 cut(s) 84, 250, 594, 873, 934
Sau96I GGNCC 5 cut(s) 79, 91, 110, 151, 507
SchI GAGTC 1 cut(s) 695
ScrFI CCNGG 4 cut(s) 26, 547, 605, 768
SduI GDGCHC 1 cut(s) 483
SexAI ACCWGGT 1 cut(s) 603
SfaNI GCATC 1 cut(s) 349
SfuI TTCGAA 1 cut(s) 63
SgrAI CRCCGGYG 1 cut(s) 167
SinI GGWCC 2 cut(s) 91, 507
Sse9I AATT 5 cut(s) 15, 59, 519, 703, 1064
SseBI AGGCCT 1 cut(s) 405
SsiI CCGC 5 cut(s) 165, 218, 231, 535, 812
SspMI CTAG 3 cut(s) 155, 401, 485
StuI AGGCCT 1 cut(s) 405
StyD4I CCNGG 4 cut(s) 24, 545, 603, 766
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 1 cut(s) 464
TaqI TCGA 3 cut(s) 55, 63, 475
TasI AATT 5 cut(s) 15, 59, 519, 703, 1064
TatI WGTACW 1 cut(s) 867
TauI GCSGC 2 cut(s) 167, 815
TfiI GAWTC 2 cut(s) 39, 574
Tru1I TTAA 3 cut(s) 600, 702, 1050
Tru9I TTAA 3 cut(s) 600, 702, 1050
TscAI CASTG 1 cut(s) 780
TseI GCWGC 1 cut(s) 737
TspDTI ATGAA 2 cut(s) 61, 412
TspRI CASTG 1 cut(s) 780
Van91I CCANNNNNTGG 1 cut(s) 955
VpaK11BI GGWCC 2 cut(s) 91, 507
XapI RAATTY 3 cut(s) 59, 519, 1064
XcmI CCANNNNNNNNNTGG 1 cut(s) 719
XspI CTAG 3 cut(s) 155, 401, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.