Rmu_sc0005887.1_g000004

Protein of unknown function (DUF563)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005887.1
OG0001444
Physical Location & Seq
Forward (+)
12416 .. 13492
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005887.1_g000004.1.cds

Sequence Viewer

Length: 1077 bp
atggactcatcccaacttgcatccctgggagtggaaagaatccgaccttaccctcgaaaattcgaagatttcataatggcccagatcaaggacctcacactagctgttggcccacgaagcccaccgtgtaaagtccaacacaatgctccggccctagtattcgccgccggtggatacaccggaaacttttggcatgagttcaatgatggatttatcccgctctttatcaccgccaacacaatcttcccagatcaagacttcgtgatcgtggtttcccaagctccaaagtggtgggtttataagtatgccgatttactacgcatattcaccaagcaccctattattaccatgggaaatgatgccaccacccattgttttccttctgccaatctaggccttatatcacatggtttcatgactataaaccaaacactaatacctcgtgcaaaaacgtttctgcattttcgtgggctcctagacaacgcatataagcgaaggtcccaacctcaaattctctcctctgagcagacaaaaccccggccacgccttgttttggcgagccggaatcatgcaactggacgcaggatcgttaaccaggttcaagtagttcgtttggtaaagaaagtggggtttgatgtgattgtgtttgagcctaaggccaataactcattgcatgagtcttatgcgttacttaattcaagccatgcttttgttggggtacatggcgctgcacttacacactcattgttcctccggccgggttcagtgttcgtacaggtggtgccgattggggtggactgggcggcgaatgcgtgtttcgggagagtggcgaaggggctgaggttggagtattttgagtacaagatcggagtgaaagagagtagcttggtggacaagtatggtaatgatagtttggtggtaaaagatccatttggtcttcagaaaatggggtggcgtgctgaggttatggacatttacttgaaggagcagaatgtgaagctggatttggttaggttcaaggggtatttgaagcaagcgtttaagaaggctaagaaatttatggacaacaatggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
DUF563

Protein Analysis

358

Amino Acids

40.39

Weight (kDa)

9.8

Isoelectric Point (pI)

30.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 300
AccB1I GGYRCC 1 cut(s) 781
AccBSI CCGCTC 1 cut(s) 220
AciI CCGC 4 cut(s) 165, 218, 231, 803
AclI AACGTT 1 cut(s) 452
AclWI GGATC 2 cut(s) 593, 920
AcoI YGGCCR 2 cut(s) 539, 755
AcsI RAATTY 3 cut(s) 59, 510, 1055
AcuI CTGAAG 1 cut(s) 923
AfaI GTAC 3 cut(s) 720, 774, 860
AfiI CCNNNNNNNGG 4 cut(s) 31, 88, 553, 757
AgsI TTSAA 6 cut(s) 202, 602, 699, 982, 1018, 1030
AjnI CCWGG 2 cut(s) 24, 594
AjuI GAANNNNNNNTTGG 6 cut(s) 227, 259, 495, 527, 989, 1021
AluBI AGCT 4 cut(s) 104, 281, 885, 1000
AluI AGCT 4 cut(s) 104, 281, 885, 1000
AlwI GGATC 2 cut(s) 593, 920
AoxI GGCC 7 cut(s) 78, 109, 150, 394, 539, 657, 755
ApeKI GCWGC 1 cut(s) 728
ApoI RAATTY 3 cut(s) 59, 510, 1055
AspLEI GCGC 1 cut(s) 728
AspS9I GGNCC 5 cut(s) 79, 91, 110, 151, 498
AsuC2I CCSGG 2 cut(s) 538, 759
AsuHPI GGTGA 2 cut(s) 220, 319
AsuII TTCGAA 1 cut(s) 63
AvaII GGWCC 2 cut(s) 91, 498
AxyI CCTNAGG 1 cut(s) 654
BanI GGYRCC 1 cut(s) 781
BanII GRGCYC 1 cut(s) 474
BauI CACGAG 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 929
BbvCI CCTCAGC 2 cut(s) 839, 960
BbvI GCAGC 1 cut(s) 715
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 2 cut(s) 26, 596
BciVI GTATCC 1 cut(s) 167
BcnI CCSGG 2 cut(s) 538, 759
BfaI CTAG 4 cut(s) 101, 155, 392, 476
BfoI RGCGCY 1 cut(s) 729
BfuI GTATCC 1 cut(s) 167
BisI GCNGC 3 cut(s) 165, 729, 804
BlsI GCNGC 3 cut(s) 166, 730, 805
Bme1390I CCNGG 4 cut(s) 26, 538, 596, 759
Bme18I GGWCC 2 cut(s) 91, 498
BmgT120I GGNCC 5 cut(s) 79, 91, 110, 151, 498
BmiI GGNNCC 3 cut(s) 473, 500, 783
BmrFI CCNGG 4 cut(s) 26, 538, 596, 759
BmrI ACTGGG 1 cut(s) 808
BmsI GCATC 2 cut(s) 29, 349
BmuI ACTGGG 1 cut(s) 808
BpiI GAAGAC 1 cut(s) 929
Bpu10I CCTNAGC 2 cut(s) 839, 960
Bpu14I TTCGAA 1 cut(s) 63
BpuMI CCSGG 2 cut(s) 538, 759
BsaJI CCNNGG 4 cut(s) 24, 25, 348, 536
BsaWI WCCGGW 1 cut(s) 179
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 88, 553, 757
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 2 cut(s) 580, 803
Bse21I CCTNAGG 1 cut(s) 654
Bse3DI GCAATG 1 cut(s) 668
BseBI CCWGG 2 cut(s) 26, 596
BseDI CCNNGG 4 cut(s) 24, 25, 348, 536
BseGI GGATG 2 cut(s) 8, 20
BseLI CCNNNNNNNGG 4 cut(s) 31, 88, 553, 757
BseMI GCAATG 1 cut(s) 668
BseMII CTCAG 3 cut(s) 513, 830, 951
BseNI ACTGG 2 cut(s) 580, 803
BseRI GAGGAG 1 cut(s) 508
BseX3I CGGCCG 1 cut(s) 755
BseXI GCAGC 1 cut(s) 715
BsgI GTGCAG 1 cut(s) 714
Bsh1285I CGRYCG 1 cut(s) 758
BshFI GGCC 7 cut(s) 80, 111, 152, 396, 541, 659, 757
BshNI GGYRCC 1 cut(s) 781
BsiEI CGRYCG 1 cut(s) 758
BsiSI CCGG 7 cut(s) 149, 168, 180, 538, 562, 754, 758
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 4 cut(s) 31, 88, 553, 757
BsmFI GGGAC 1 cut(s) 484
BsmI GAATGC 1 cut(s) 814
BsnI GGCC 7 cut(s) 80, 111, 152, 396, 541, 659, 757
Bsp119I TTCGAA 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 474
Bsp143I GATC 6 cut(s) 84, 250, 264, 585, 864, 925
Bsp19I CCATGG 1 cut(s) 348
BspACI CCGC 4 cut(s) 165, 218, 231, 803
BspANI GGCC 7 cut(s) 80, 111, 152, 396, 541, 659, 757
BspCNI CTCAG 3 cut(s) 514, 831, 952
BspHI TCATGA 1 cut(s) 414
BspLI GGNNCC 3 cut(s) 473, 500, 783
BspPI GGATC 2 cut(s) 593, 920
BspT104I TTCGAA 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 781
BsrBI CCGCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 668
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 2 cut(s) 580, 803
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 4 cut(s) 24, 25, 348, 536
BssMI GATC 6 cut(s) 84, 250, 264, 585, 864, 925
BssSI CACGAG 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 348
Bst2BI CACGAG 1 cut(s) 441
Bst2UI CCWGG 2 cut(s) 26, 596
Bst4CI ACNGT 1 cut(s) 126
BstBI TTCGAA 1 cut(s) 63
BstC8I GCNNGC 3 cut(s) 559, 957, 1035
BstDEI CTNAG 5 cut(s) 522, 654, 839, 960, 1050
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 2 cut(s) 8, 20
BstH2I RGCGCY 1 cut(s) 729
BstHHI GCGC 1 cut(s) 728
BstKTI GATC 6 cut(s) 87, 253, 267, 588, 867, 928
BstMBI GATC 6 cut(s) 84, 250, 264, 585, 864, 925
BstMCI CGRYCG 1 cut(s) 758
BstMWI GCNNNNNNNGC 2 cut(s) 117, 809
BstNI CCWGG 2 cut(s) 26, 596
BstSCI CCNGG 4 cut(s) 24, 536, 594, 757
BstV1I GCAGC 1 cut(s) 715
BstV2I GAAGAC 1 cut(s) 929
BstX2I RGATCY 1 cut(s) 925
BstXI CCANNNNNNTGG 1 cut(s) 291
BstYI RGATCY 1 cut(s) 925
BstZI CGGCCG 1 cut(s) 755
Bsu36I CCTNAGG 1 cut(s) 654
BsuI GTATCC 1 cut(s) 167
BsuRI GGCC 7 cut(s) 80, 111, 152, 396, 541, 659, 757
BtgI CCRYGG 1 cut(s) 348
BtsCI GGATG 2 cut(s) 8, 20
BtsIMutI CAGTG 1 cut(s) 771
Cac8I GCNNGC 3 cut(s) 559, 957, 1035
CciI TCATGA 1 cut(s) 414
CfoI GCGC 1 cut(s) 728
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 5 cut(s) 79, 91, 110, 151, 498
CseI GACGC 1 cut(s) 588
CsiI ACCWGGT 1 cut(s) 594
Csp6I GTAC 3 cut(s) 719, 773, 859
CviAII CATG 8 cut(s) 194, 349, 407, 415, 569, 674, 704, 722
CviQI GTAC 3 cut(s) 719, 773, 859
DdeI CTNAG 5 cut(s) 522, 654, 839, 960, 1050
DpnI GATC 6 cut(s) 86, 252, 266, 587, 866, 927
DpnII GATC 6 cut(s) 84, 250, 264, 585, 864, 925
EaeI YGGCCR 2 cut(s) 539, 755
EagI CGGCCG 1 cut(s) 755
EclXI CGGCCG 1 cut(s) 755
Eco130I CCWWGG 1 cut(s) 348
Eco147I AGGCCT 1 cut(s) 396
Eco24I GRGCYC 1 cut(s) 474
Eco47I GGWCC 2 cut(s) 91, 498
Eco52I CGGCCG 1 cut(s) 755
Eco57I CTGAAG 1 cut(s) 923
Eco81I CCTNAGG 1 cut(s) 654
EcoO109I RGGNCCY 2 cut(s) 91, 498
EcoRII CCWGG 2 cut(s) 24, 594
EcoT14I CCWWGG 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 348
FaeI CATG 8 cut(s) 197, 352, 410, 418, 572, 677, 707, 725
FalI AAGNNNNNCTT 2 cut(s) 691, 723
FaqI GGGAC 1 cut(s) 484
FatI CATG 8 cut(s) 193, 348, 406, 414, 568, 673, 703, 721
FauI CCCGC 1 cut(s) 225
Fnu4HI GCNGC 3 cut(s) 165, 729, 804
FokI GGATG 1 cut(s) 7
FriOI GRGCYC 1 cut(s) 474
Fsp4HI GCNGC 3 cut(s) 165, 729, 804
FspBI CTAG 4 cut(s) 101, 155, 392, 476
GlaI GCGC 1 cut(s) 727
GluI GCNGC 3 cut(s) 165, 729, 804
HaeII RGCGCY 1 cut(s) 729
HaeIII GGCC 7 cut(s) 80, 111, 152, 396, 541, 659, 757
HapII CCGG 7 cut(s) 149, 168, 180, 538, 562, 754, 758
HgaI GACGC 1 cut(s) 588
HhaI GCGC 1 cut(s) 728
Hin1II CATG 8 cut(s) 197, 352, 410, 418, 572, 677, 707, 725
Hin6I GCGC 1 cut(s) 726
HinP1I GCGC 1 cut(s) 726
HincII GTYRAC 1 cut(s) 592
HindII GTYRAC 1 cut(s) 592
HinfI GANTC 4 cut(s) 5, 39, 565, 677
HpaI GTTAAC 1 cut(s) 592
HpaII CCGG 7 cut(s) 149, 168, 180, 538, 562, 754, 758
HphI GGTGA 2 cut(s) 220, 319
Hpy166II GTNNAC 3 cut(s) 592, 796, 892
Hpy188I TCNGA 4 cut(s) 44, 523, 869, 942
Hpy188III TCNNGA 4 cut(s) 254, 262, 415, 820
Hpy8I GTNNAC 3 cut(s) 592, 796, 892
HpyAV CCTTC 5 cut(s) 390, 489, 826, 976, 1039
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 1 cut(s) 452
HpyCH4V TGCA 6 cut(s) 20, 446, 460, 572, 673, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 809
HpyF3I CTNAG 5 cut(s) 522, 654, 839, 960, 1050
HpySE526I ACGT 1 cut(s) 452
Hsp92II CATG 8 cut(s) 197, 352, 410, 418, 572, 677, 707, 725
HspAI GCGC 1 cut(s) 726
KspAI GTTAAC 1 cut(s) 592
Kzo9I GATC 6 cut(s) 84, 250, 264, 585, 864, 925
LmnI GCTCC 4 cut(s) 151, 286, 477, 985
Lsp1109I GCAGC 1 cut(s) 715
LweI GCATC 2 cut(s) 29, 349
MabI ACCWGGT 1 cut(s) 594
MaeI CTAG 4 cut(s) 101, 155, 392, 476
MaeII ACGT 1 cut(s) 452
MaeIII GTNAC 1 cut(s) 687
MalI GATC 6 cut(s) 86, 252, 266, 587, 866, 927
MbiI CCGCTC 1 cut(s) 220
MboI GATC 6 cut(s) 84, 250, 264, 585, 864, 925
MboII GAAGA 3 cut(s) 77, 235, 929
MflI RGATCY 1 cut(s) 925
MhlI GDGCHC 1 cut(s) 474
MluCI AATT 4 cut(s) 59, 510, 694, 1055
MlyI GAGTC 1 cut(s) 686
MmeI TCCRAC 3 cut(s) 67, 160, 825
MnlI CCTC 8 cut(s) 63, 104, 450, 516, 529, 761, 834, 955
MseI TTAA 3 cut(s) 591, 693, 1041
MslI CAYNNNNRTG 1 cut(s) 465
MspI CCGG 7 cut(s) 149, 168, 180, 538, 562, 754, 758
MspR9I CCNGG 4 cut(s) 26, 538, 596, 759
Mva1269I GAATGC 1 cut(s) 814
MvaI CCWGG 2 cut(s) 26, 596
MwoI GCNNNNNNNGC 2 cut(s) 117, 809
NciI CCSGG 2 cut(s) 538, 759
NcoI CCATGG 1 cut(s) 348
NdeII GATC 6 cut(s) 84, 250, 264, 585, 864, 925
NlaIII CATG 8 cut(s) 197, 352, 410, 418, 572, 677, 707, 725
NlaIV GGNNCC 3 cut(s) 473, 500, 783
NspV TTCGAA 1 cut(s) 63
PagI TCATGA 1 cut(s) 414
PasI CCCWGGG 1 cut(s) 25
PceI AGGCCT 1 cut(s) 396
PctI GAATGC 1 cut(s) 814
PfeI GAWTC 2 cut(s) 39, 565
PkrI GCNGC 3 cut(s) 166, 730, 805
PleI GAGTC 1 cut(s) 685
PpsI GAGTC 1 cut(s) 685
PpuMI RGGWCCY 2 cut(s) 91, 498
PsiI TTATAA 1 cut(s) 300
Psp1406I AACGTT 1 cut(s) 452
Psp5II RGGWCCY 2 cut(s) 91, 498
Psp6I CCWGG 2 cut(s) 24, 594
PspGI CCWGG 2 cut(s) 24, 594
PspN4I GGNNCC 3 cut(s) 473, 500, 783
PspPI GGNCC 5 cut(s) 79, 91, 110, 151, 498
PspPPI RGGWCCY 2 cut(s) 91, 498
PsuI RGATCY 1 cut(s) 925
RsaI GTAC 3 cut(s) 720, 774, 860
RsaNI GTAC 3 cut(s) 719, 773, 859
RseI CAYNNNNRTG 1 cut(s) 465
SaqAI TTAA 3 cut(s) 591, 693, 1041
SatI GCNGC 3 cut(s) 165, 729, 804
Sau3AI GATC 6 cut(s) 84, 250, 264, 585, 864, 925
Sau96I GGNCC 5 cut(s) 79, 91, 110, 151, 498
SchI GAGTC 1 cut(s) 686
ScrFI CCNGG 4 cut(s) 26, 538, 596, 759
SduI GDGCHC 1 cut(s) 474
SexAI ACCWGGT 1 cut(s) 594
SfaNI GCATC 2 cut(s) 29, 349
SfuI TTCGAA 1 cut(s) 63
SgrAI CRCCGGYG 1 cut(s) 167
SinI GGWCC 2 cut(s) 91, 498
SmiMI CAYNNNNRTG 1 cut(s) 465
Sse9I AATT 4 cut(s) 59, 510, 694, 1055
SseBI AGGCCT 1 cut(s) 396
SsiI CCGC 4 cut(s) 165, 218, 231, 803
SspMI CTAG 4 cut(s) 101, 155, 392, 476
StuI AGGCCT 1 cut(s) 396
StyD4I CCNGG 4 cut(s) 24, 536, 594, 757
StyI CCWWGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 1 cut(s) 455
TaqI TCGA 2 cut(s) 55, 63
TasI AATT 4 cut(s) 59, 510, 694, 1055
TatI WGTACW 1 cut(s) 858
TauI GCSGC 2 cut(s) 167, 806
TfiI GAWTC 2 cut(s) 39, 565
Tru1I TTAA 3 cut(s) 591, 693, 1041
Tru9I TTAA 3 cut(s) 591, 693, 1041
TscAI CASTG 1 cut(s) 771
TseI GCWGC 1 cut(s) 728
TspDTI ATGAA 2 cut(s) 61, 403
TspRI CASTG 1 cut(s) 771
VpaK11BI GGWCC 2 cut(s) 91, 498
XapI RAATTY 3 cut(s) 59, 510, 1055
XcmI CCANNNNNNNNNTGG 1 cut(s) 710
XspI CTAG 4 cut(s) 101, 155, 392, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.