Rw0G016870

Protein of unknown function (DUF563)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00751
OG0001444
Physical Location & Seq
Forward (+)
580236 .. 582750
2515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G016870.1

Sequence Viewer

Length: 1368 bp
ATGAACAAGAAAGAGTCGATAACAGCGATTTTAGGCGTGTCGCTCTTGGTGGTGTTGTTTGTTTGCCACATTAATCTCTCGGCAAATTTGAGGTTCAACTTCGAACTCATTCACTCACTTGCAACTACTCCAAAACCAGCACCGAGATCAAATACTAGCGGCCGGAACCCTATCAATTCGACACGTTCGCCATCTTCGACATCAACAAAGATTAGATGCACCCGTTCTCACAGATACTACGATTTCTGTTTCATCGACGGCCCAACAGTTCTGGACCCCACAACCTCCACGTTATTTGTAATGGACTCCAGAGGCCCAACCTTGGTGGAAAAAATCAAGCCCTACCCACGAAAACATGAGAATTCGATAATGTCGGGAATCAAAGAGCTCACCCTAACATCAGGCCCACCAGGCCCAAAATGCCAGGTCCAACACAATGCCCCGGCAATTGTATTCAGTGCGGGCGGGTACACCGGAAACTTCTTCCATGATTTCAACGATGGGTTCATCCCCCTCTACATCATAGTCAATTCGATTCTCTACGATCAAGATCCCGTGCTCGTGATTTCCAAAGCACGTGATTGGTGGCTTCAGAGGTACTCAGATTTGCTACAGGTTTTTAGCGAGCACCCAATTATAAACCTCGATAATGATACTGCCACCCATTGTTTTCGTTCTGCCACCGTGGGTCTAATTTCTCATGGATTTTTGACCATAAACCCCAAATTGTTAAAGACCCCCAAGACACTGCCTCATTTCCATGCCATCCTAGGCAAAGCCTTTGGCCAAACTGCCCAACGCTTCTACCGTCAGCGCCACCACAATGAGCGGCCACGCATAGTGTTAATTAGTCGAACCGTAGGCGTTGGCCGAGCAATCTTGAACGAAGAGGAAGCGATGGAAGTGGCAGACAGAATAGGGTTCGAGGTGATTGTTTATGAGCCAAGTTCAAGGACCGATTTGCATGGAGCATATGACTTGCTTAATAATAGCCATGCAGTGGTTGGCGTTCATGGTGCGGCCCTTACTCACTTGTTGTTCATGCGGCCTGGGACGGTGTTCATGCAAATTGTGCCCCTAGGGACTAATTGGTTGGCAAAAGTGTGCTATGAAAATCCAGGTAGGGCAATGGGGCTGGAGTACATGGACTATAGGATTACTGCGGAGGAGAGCAGCTTGTTAGAAACTTACGGAAAGGATGACATTGTGGTTAAGAATCCGGGAGCTAAGATTGGTACTAATTGGTCCATGGAGATTATGAAAATTTATCTCAAGGAACAGAATATCAGGTTGGATTTGGATAGGTTTTCTTGGTTTTTGAAGGCCGCTTATGACAAGGCCAAGAAGTTTATGGACGAGGAAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
DUF563

Protein Analysis

455

Amino Acids

51.26

Weight (kDa)

8.84

Isoelectric Point (pI)

29.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 195 - 354 1.8e-14 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 638
AccB7I CCANNNNNTGG 1 cut(s) 1000
AccBSI CCGCTC 1 cut(s) 829
AciI CCGC 8 cut(s) 159, 461, 465, 829, 1019, 1045, 1163, 1326
AclWI GGATC 1 cut(s) 545
AcoI YGGCCR 4 cut(s) 160, 784, 830, 868
AcsI RAATTY 3 cut(s) 85, 361, 1263
AcuI CTGAAG 1 cut(s) 575
AcvI CACGTG 1 cut(s) 578
AfaI GTAC 4 cut(s) 470, 599, 1142, 1237
AfiI CCNNNNNNNGG 2 cut(s) 322, 1000
AflIII ACRYGT 1 cut(s) 182
AgsI TTSAA 5 cut(s) 97, 496, 883, 951, 1321
AjnI CCWGG 4 cut(s) 409, 423, 1048, 1117
AjuI GAANNNNNNNTTGG 2 cut(s) 1274, 1306
AluBI AGCT 3 cut(s) 388, 1176, 1226
AluI AGCT 3 cut(s) 388, 1176, 1226
Alw21I GWGCWC 3 cut(s) 390, 561, 630
AlwI GGATC 1 cut(s) 545
ApeKI GCWGC 1 cut(s) 1173
ApoI RAATTY 3 cut(s) 85, 361, 1263
AseI ATTAAT 1 cut(s) 72
Asp700I GAANNNNTTC 1 cut(s) 108
AspA2I CCTAGG 2 cut(s) 769, 1078
AspLEI GCGC 1 cut(s) 816
AspS9I GGNCC 9 cut(s) 260, 274, 314, 404, 413, 427, 954, 1021, 1245
AsuC2I CCSGG 2 cut(s) 443, 1221
AsuHPI GGTGA 2 cut(s) 382, 940
AsuII TTCGAA 1 cut(s) 102
AvaII GGWCC 4 cut(s) 274, 427, 954, 1245
AvrII CCTAGG 2 cut(s) 769, 1078
BaeGI GKGCMC 1 cut(s) 1077
BalI TGGCCA 1 cut(s) 786
BanII GRGCYC 1 cut(s) 390
BauI CACGAG 1 cut(s) 560
BbrPI CACGTG 1 cut(s) 578
Bbv12I GWGCWC 3 cut(s) 390, 561, 630
BbvI GCAGC 1 cut(s) 1185
BccI CCATC 4 cut(s) 199, 494, 773, 892
BceAI ACGGC 1 cut(s) 274
BciT130I CCWGG 4 cut(s) 411, 425, 1050, 1119
BcnI CCSGG 2 cut(s) 443, 1221
BfaI CTAG 3 cut(s) 156, 770, 1079
BfmI CTRYAG 2 cut(s) 611, 1150
BfoI RGCGCY 1 cut(s) 817
BglI GCCNNNNNGGC 1 cut(s) 411
BisI GCNGC 6 cut(s) 160, 830, 1020, 1046, 1174, 1326
BlnI CCTAGG 2 cut(s) 769, 1078
BlsI GCNGC 6 cut(s) 161, 831, 1021, 1047, 1175, 1327
Bme1390I CCNGG 6 cut(s) 411, 425, 443, 1050, 1119, 1221
Bme18I GGWCC 4 cut(s) 274, 427, 954, 1245
BmgT120I GGNCC 9 cut(s) 260, 274, 314, 404, 413, 427, 954, 1021, 1245
BmiI GGNNCC 2 cut(s) 167, 276
BmrFI CCNGG 6 cut(s) 411, 425, 443, 1050, 1119, 1221
BmsI GCATC 1 cut(s) 206
BpmI CTGGAG 2 cut(s) 292, 1157
Bpu14I TTCGAA 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 1256
BpuMI CCSGG 2 cut(s) 443, 1221
BsaAI YACGTR 1 cut(s) 578
BsaBI GATNNNNATC 1 cut(s) 549
BsaJI CCNNGG 7 cut(s) 321, 441, 684, 769, 1049, 1078, 1248
BsaWI WCCGGW 1 cut(s) 473
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 1000
Bse3DI GCAATG 1 cut(s) 1134
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 4 cut(s) 411, 425, 1050, 1119
BseDI CCNNGG 7 cut(s) 321, 441, 684, 769, 1049, 1078, 1248
BseGI GGATG 3 cut(s) 507, 765, 1204
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 2 cut(s) 322, 1000
BseMI GCAATG 1 cut(s) 1134
BseMII CTCAG 1 cut(s) 615
BseRI GAGGAG 1 cut(s) 1181
BseSI GKGCMC 1 cut(s) 1077
BseX3I CGGCCG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 1185
Bsh1285I CGRYCG 1 cut(s) 163
BsiEI CGRYCG 1 cut(s) 163
BsiHKAI GWGCWC 3 cut(s) 390, 561, 630
BsiSI CCGG 4 cut(s) 163, 443, 474, 1220
BslFI GGGAC 2 cut(s) 1066, 1096
BslI CCNNNNNNNGG 2 cut(s) 322, 1000
BsmFI GGGAC 2 cut(s) 1066, 1096
Bsp119I TTCGAA 1 cut(s) 102
Bsp1286I GDGCHC 4 cut(s) 390, 561, 630, 1077
Bsp143I GATC 3 cut(s) 146, 544, 550
Bsp19I CCATGG 1 cut(s) 1248
BspACI CCGC 8 cut(s) 159, 461, 465, 829, 1019, 1045, 1163, 1326
BspCNI CTCAG 1 cut(s) 614
BspLI GGNNCC 2 cut(s) 167, 276
BspPI GGATC 1 cut(s) 545
BspT104I TTCGAA 1 cut(s) 102
BsrBI CCGCTC 1 cut(s) 829
BsrDI GCAATG 1 cut(s) 1134
BssECI CCNNGG 7 cut(s) 321, 441, 684, 769, 1049, 1078, 1248
BssMI GATC 3 cut(s) 146, 544, 550
BssSI CACGAG 1 cut(s) 560
BssT1I CCWWGG 4 cut(s) 321, 769, 1078, 1248
Bst2BI CACGAG 1 cut(s) 560
Bst2UI CCWGG 4 cut(s) 411, 425, 1050, 1119
Bst4CI ACNGT 5 cut(s) 268, 685, 809, 859, 1057
Bst6I CTCTTC 1 cut(s) 882
BstAPI GCANNNNNTGC 1 cut(s) 1072
BstBAI YACGTR 1 cut(s) 578
BstBI TTCGAA 1 cut(s) 102
BstC8I GCNNGC 2 cut(s) 463, 626
BstDEI CTNAG 2 cut(s) 601, 1227
BstDSI CCRYGG 2 cut(s) 684, 1248
BstF5I GGATG 3 cut(s) 507, 765, 1204
BstH2I RGCGCY 1 cut(s) 817
BstHHI GCGC 1 cut(s) 816
BstKTI GATC 3 cut(s) 149, 547, 553
BstMBI GATC 3 cut(s) 146, 544, 550
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 3 cut(s) 411, 420, 1072
BstNI CCWGG 4 cut(s) 411, 425, 1050, 1119
BstSCI CCNGG 6 cut(s) 409, 423, 441, 1048, 1117, 1219
BstSFI CTRYAG 2 cut(s) 611, 1150
BstSLI GKGCMC 1 cut(s) 1077
BstV1I GCAGC 1 cut(s) 1185
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
BstZI CGGCCG 1 cut(s) 160
BtgI CCRYGG 2 cut(s) 684, 1248
BtgZI GCGATG 1 cut(s) 911
BtsCI GGATG 3 cut(s) 507, 765, 1204
BtsI GCAGTG 2 cut(s) 746, 1005
BtsIMutI CAGTG 3 cut(s) 463, 746, 1005
Cac8I GCNNGC 2 cut(s) 463, 626
CfoI GCGC 1 cut(s) 816
Cfr13I GGNCC 9 cut(s) 260, 274, 314, 404, 413, 427, 954, 1021, 1245
Csp6I GTAC 4 cut(s) 469, 598, 1141, 1236
CspCI CAANNNNNGTGG 4 cut(s) 277, 306, 312, 341
CviQI GTAC 4 cut(s) 469, 598, 1141, 1236
DdeI CTNAG 2 cut(s) 601, 1227
DpnI GATC 3 cut(s) 148, 546, 552
DpnII GATC 3 cut(s) 146, 544, 550
EaeI YGGCCR 4 cut(s) 160, 784, 830, 868
EagI CGGCCG 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 882
EarI CTCTTC 1 cut(s) 882
Ecl136II GAGCTC 1 cut(s) 388
EclXI CGGCCG 1 cut(s) 160
Eco130I CCWWGG 4 cut(s) 321, 769, 1078, 1248
Eco24I GRGCYC 1 cut(s) 390
Eco47I GGWCC 4 cut(s) 274, 427, 954, 1245
Eco52I CGGCCG 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 388
Eco57I CTGAAG 1 cut(s) 575
Eco72I CACGTG 1 cut(s) 578
EcoICRI GAGCTC 1 cut(s) 388
EcoRI GAATTC 1 cut(s) 361
EcoRII CCWGG 4 cut(s) 409, 423, 1048, 1117
EcoT14I CCWWGG 4 cut(s) 321, 769, 1078, 1248
EcoT38I GRGCYC 1 cut(s) 390
ErhI CCWWGG 4 cut(s) 321, 769, 1078, 1248
FaqI GGGAC 2 cut(s) 1066, 1096
FauI CCCGC 2 cut(s) 454, 458
FauNDI CATATG 1 cut(s) 973
Fnu4HI GCNGC 6 cut(s) 160, 830, 1020, 1046, 1174, 1326
FokI GGATG 3 cut(s) 494, 752, 1211
FriOI GRGCYC 1 cut(s) 390
Fsp4HI GCNGC 6 cut(s) 160, 830, 1020, 1046, 1174, 1326
FspBI CTAG 3 cut(s) 156, 770, 1079
GlaI GCGC 1 cut(s) 815
GluI GCNGC 6 cut(s) 160, 830, 1020, 1046, 1174, 1326
GsuI CTGGAG 2 cut(s) 292, 1157
HaeII RGCGCY 1 cut(s) 817
HapII CCGG 4 cut(s) 163, 443, 474, 1220
HhaI GCGC 1 cut(s) 816
Hin6I GCGC 1 cut(s) 814
HinP1I GCGC 1 cut(s) 814
HinfI GANTC 5 cut(s) 14, 305, 378, 535, 1216
HpaII CCGG 4 cut(s) 163, 443, 474, 1220
HphI GGTGA 2 cut(s) 382, 940
Hpy166II GTNNAC 1 cut(s) 471
Hpy188I TCNGA 2 cut(s) 594, 604
Hpy188III TCNNGA 6 cut(s) 272, 309, 375, 548, 562, 880
Hpy8I GTNNAC 1 cut(s) 471
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 2 cut(s) 1315, 1355
HpyCH4III ACNGT 5 cut(s) 268, 685, 809, 859, 1057
HpyCH4IV ACGT 3 cut(s) 184, 290, 577
HpyCH4V TGCA 5 cut(s) 122, 219, 964, 998, 1066
HpyF10VI GCNNNNNNNGC 3 cut(s) 411, 420, 1072
HpyF3I CTNAG 2 cut(s) 601, 1227
HpySE526I ACGT 3 cut(s) 184, 290, 577
HspAI GCGC 1 cut(s) 814
Kzo9I GATC 3 cut(s) 146, 544, 550
LmnI GCTCC 2 cut(s) 968, 1223
Lsp1109I GCAGC 1 cut(s) 1185
LweI GCATC 1 cut(s) 206
MaeI CTAG 3 cut(s) 156, 770, 1079
MaeII ACGT 3 cut(s) 184, 290, 577
MalI GATC 3 cut(s) 148, 546, 552
MbiI CCGCTC 1 cut(s) 829
MboI GATC 3 cut(s) 146, 544, 550
MboII GAAGA 3 cut(s) 186, 475, 899
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 1 cut(s) 550
MhlI GDGCHC 4 cut(s) 390, 561, 630, 1077
MlsI TGGCCA 1 cut(s) 786
MluNI TGGCCA 1 cut(s) 786
MlyI GAGTC 2 cut(s) 23, 299
MmeI TCCRAC 2 cut(s) 454, 1272
Mox20I TGGCCA 1 cut(s) 786
MroXI GAANNNNTTC 1 cut(s) 108
MscI TGGCCA 1 cut(s) 786
MseI TTAA 5 cut(s) 72, 731, 845, 984, 1212
MslI CAYNNNNRTG 2 cut(s) 759, 822
Msp20I TGGCCA 1 cut(s) 786
MspI CCGG 4 cut(s) 163, 443, 474, 1220
MspR9I CCNGG 6 cut(s) 411, 425, 443, 1050, 1119, 1221
MunI CAATTG 1 cut(s) 447
MvaI CCWGG 4 cut(s) 411, 425, 1050, 1119
MwoI GCNNNNNNNGC 3 cut(s) 411, 420, 1072
NciI CCSGG 2 cut(s) 443, 1221
NcoI CCATGG 1 cut(s) 1248
NdeI CATATG 1 cut(s) 973
NdeII GATC 3 cut(s) 146, 544, 550
NlaIV GGNNCC 2 cut(s) 167, 276
NmeAIII GCCGAG 2 cut(s) 59, 896
NspV TTCGAA 1 cut(s) 102
PcsI WCGNNNNNNNCGW 3 cut(s) 23, 194, 805
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 3 cut(s) 378, 535, 1216
PflMI CCANNNNNTGG 1 cut(s) 1000
PfoI TCCNGGA 1 cut(s) 1219
PkrI GCNGC 6 cut(s) 161, 831, 1021, 1047, 1175, 1327
PleI GAGTC 2 cut(s) 22, 299
PmaCI CACGTG 1 cut(s) 578
PmlI CACGTG 1 cut(s) 578
PpsI GAGTC 2 cut(s) 22, 299
Ppu21I YACGTR 1 cut(s) 578
PshBI ATTAAT 1 cut(s) 72
PsiI TTATAA 1 cut(s) 638
Psp124BI GAGCTC 1 cut(s) 390
Psp6I CCWGG 4 cut(s) 409, 423, 1048, 1117
PspCI CACGTG 1 cut(s) 578
PspGI CCWGG 4 cut(s) 409, 423, 1048, 1117
PspN4I GGNNCC 2 cut(s) 167, 276
PspPI GGNCC 9 cut(s) 260, 274, 314, 404, 413, 427, 954, 1021, 1245
PsuI RGATCY 1 cut(s) 550
RsaI GTAC 4 cut(s) 470, 599, 1142, 1237
RsaNI GTAC 4 cut(s) 469, 598, 1141, 1236
RseI CAYNNNNRTG 2 cut(s) 759, 822
SacI GAGCTC 1 cut(s) 390
SaqAI TTAA 5 cut(s) 72, 731, 845, 984, 1212
SatI GCNGC 6 cut(s) 160, 830, 1020, 1046, 1174, 1326
Sau3AI GATC 3 cut(s) 146, 544, 550
Sau96I GGNCC 9 cut(s) 260, 274, 314, 404, 413, 427, 954, 1021, 1245
SchI GAGTC 2 cut(s) 23, 299
ScrFI CCNGG 6 cut(s) 411, 425, 443, 1050, 1119, 1221
SduI GDGCHC 4 cut(s) 390, 561, 630, 1077
SfaNI GCATC 1 cut(s) 206
SfcI CTRYAG 2 cut(s) 611, 1150
SfiI GGCCNNNNNGGCC 1 cut(s) 411
SfuI TTCGAA 1 cut(s) 102
SinI GGWCC 4 cut(s) 274, 427, 954, 1245
SmiMI CAYNNNNRTG 2 cut(s) 759, 822
SmlI CTYRAG 1 cut(s) 1271
SmoI CTYRAG 1 cut(s) 1271
SsiI CCGC 8 cut(s) 159, 461, 465, 829, 1019, 1045, 1163, 1326
SspMI CTAG 3 cut(s) 156, 770, 1079
SstI GAGCTC 1 cut(s) 390
StyD4I CCNGG 6 cut(s) 409, 423, 441, 1048, 1117, 1219
StyI CCWWGG 4 cut(s) 321, 769, 1078, 1248
TaaI ACNGT 5 cut(s) 268, 685, 809, 859, 1057
TaiI ACGT 3 cut(s) 187, 293, 580
TaqII GACCGA 1 cut(s) 971
TatI WGTACW 1 cut(s) 1140
TauI GCSGC 5 cut(s) 162, 832, 1022, 1048, 1328
TfiI GAWTC 3 cut(s) 378, 535, 1216
Tru1I TTAA 5 cut(s) 72, 731, 845, 984, 1212
Tru9I TTAA 5 cut(s) 72, 731, 845, 984, 1212
TscAI CASTG 3 cut(s) 463, 753, 1005
TseI GCWGC 1 cut(s) 1173
TspDTI ATGAA 8 cut(s) 17, 241, 496, 1001, 1030, 1051, 1125, 1274
TspGWI ACGGA 1 cut(s) 1206
TspRI CASTG 3 cut(s) 463, 753, 1005
Van91I CCANNNNNTGG 1 cut(s) 1000
VpaK11BI GGWCC 4 cut(s) 274, 427, 954, 1245
VspI ATTAAT 1 cut(s) 72
XapI RAATTY 3 cut(s) 85, 361, 1263
XcmI CCANNNNNNNNNTGG 2 cut(s) 1001, 1348
XmaJI CCTAGG 2 cut(s) 769, 1078
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 3 cut(s) 156, 770, 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.