Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001444

Physical Location & Seq

Genomic Coordinates Forward (+)

4603774 .. 4604450

Gene Structure 677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1066400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGACCATGAACCAAATCTTCTACCAAATAAAAAAATCATACATGGATTTTCGTGTGCTCCCAGAGAAAGCCTATGGGCCAAAAGCCCACCCCAAGGTTTTGACACCCAAGCCCACTAGATCACGCCCAAGACATGTGTTGGCCTACCGCGAAAATGCATGTGGACGCATGATTACGAACCATAAACAAGTGACTCGGTTCTGTGTTTATTCAAGTGGTTCCGATTGGGATCAATTGGGCTGCATTTGCTTATATCGGGACTCCCGATTCGGGAGGGGGGCTAGGTCTTTGAATTTGGAATATTCCGAGTATAAGATTGGAGTGAACGAGAGTAGCTTGGTGGACAAGTATGGGAAGGAGAATTTCTTGCTAAAGGACCCATCTGCCCTTCTGAAAAAAGGTTGGCCATCTGAGTTTATGAAGATTTACATCAAGGAGCAAAATGTCAAACTAGATTTGGAAAGATTTAAGAGTTGTTTGAAGGAGGCTTATACAAAGACTAAGAGATTTGTGGACAAAAATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

DUF563

Protein Analysis

176

Amino Acids

20.5

Weight (kDa)

9.7

Isoelectric Point (pI)

27.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03360 AT2G03360 AT2G03370 AT2G03370
fragaria_vesca	FvH4_4g30540 FvH4_4g30550 FvH4_4g30551
malus_domestica	MD00G1177600.v1.1 MD00G1177700.v1.1 MD13G1066400.v1.1 MD16G1065500.v1.1 MD16G1065600.v1.1
prunus_persica	Prupe.1G281500_v2.0.a1 Prupe.1G281500_v2.0.a1 Prupe.1G281500_v2.0.a1 Prupe.1G281600_v2.0.a1
pyrus_communis	pycom16g05720
rosa_chinensis	RchiOBHm_Chr4g0438911 RchiOBHm_Chr4g0438921 RchiOBHm_Chr4g0438931
rosa_laevigata	RLG00000006317 RLG00000006318 RLG00000006320
rosa_multiflora	Rmu_co8325543.1_g000001 Rmu_sc0002505.1_g000027 Rmu_sc0005887.1_g000002 Rmu_sc0005887.1_g000004 Rmu_sc0032189.1_g000001 Rmu_sc0038333.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379930 Rroxscaffold_5G00379940 Rroxscaffold_5G00379950
rosa_rugosa	Rorug04G0314300 Rorug04G0314300 Rorug04G0314400
rosa_samantha	Rh4AG365000 Rh4AG365100 Rh4BG376100 Rh4BG376200 Rh4BG376300 Rh4CG390200 Rh4CG390300 Rh4CG390400 Rh4DG370800 Rh4DG370900 Rh4DG371000
rosa_wichuraiana	Rw0G007320 Rw0G007330 Rw0G007340 Rw0G016870 Rw0G016880 Rw0G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	150
AciI	CCGC	1 cut(s)	148
AclWI	GGATC	1 cut(s)	237
AcoI	YGGCCR	1 cut(s)	404
AcsI	RAATTY	2 cut(s)	292, 361
AfiI	CCNNNNNNNGG	2 cut(s)	94, 270
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	3 cut(s)	213, 292, 481
AluBI	AGCT	1 cut(s)	336
AluI	AGCT	1 cut(s)	336
Alw21I	GWGCWC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	237
AoxI	GGCC	3 cut(s)	77, 141, 404
ApeKI	GCWGC	1 cut(s)	240
ApoI	RAATTY	2 cut(s)	292, 361
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
AspS9I	GGNCC	2 cut(s)	77, 376
AvaII	GGWCC	1 cut(s)	376
BalI	TGGCCA	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	2 cut(s)	388, 415
BfaI	CTAG	3 cut(s)	117, 282, 452
BisI	GCNGC	1 cut(s)	241
BlsI	GCNGC	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	2 cut(s)	77, 376
BmiI	GGNNCC	2 cut(s)	220, 378
BsaBI	GATNNNNATC	2 cut(s)	228, 428
BsaJI	CCNNGG	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 270
Bse8I	GATNNNNATC	2 cut(s)	228, 428
BseDI	CCNNGG	1 cut(s)	93
BseJI	GATNNNNATC	2 cut(s)	228, 428
BseLI	CCNNNNNNNGG	2 cut(s)	94, 270
BseMII	CTCAG	1 cut(s)	402
BseXI	GCAGC	1 cut(s)	227
Bsh1236I	CGCG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	79, 143, 406
BsiHKAI	GWGCWC	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	94, 270
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	3 cut(s)	79, 143, 406
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	119, 229
BspACI	CCGC	1 cut(s)	148
BspANI	GGCC	3 cut(s)	79, 143, 406
BspCNI	CTCAG	1 cut(s)	403
BspFNI	CGCG	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	220, 378
BspPI	GGATC	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	93
BssMI	GATC	2 cut(s)	119, 229
BssT1I	CCWWGG	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	411, 501
BstFNI	CGCG	1 cut(s)	150
BstKTI	GATC	2 cut(s)	122, 232
BstMBI	GATC	2 cut(s)	119, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNSI	RCATGY	2 cut(s)	137, 162
BstUI	CGCG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	227
BsuRI	GGCC	3 cut(s)	79, 143, 406
Cfr13I	GGNCC	2 cut(s)	77, 376
CseI	GACGC	1 cut(s)	174
CviAII	CATG	5 cut(s)	7, 43, 134, 159, 169
DdeI	CTNAG	2 cut(s)	411, 501
DpnI	GATC	2 cut(s)	121, 231
DpnII	GATC	2 cut(s)	119, 229
EaeI	YGGCCR	1 cut(s)	404
Eco130I	CCWWGG	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	376
EcoO109I	RGGNCCY	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	93
EcoT22I	ATGCAT	1 cut(s)	160
ErhI	CCWWGG	1 cut(s)	93
FaeI	CATG	5 cut(s)	10, 46, 137, 162, 172
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	5 cut(s)	6, 42, 133, 158, 168
Fnu4HI	GCNGC	1 cut(s)	241
Fsp4HI	GCNGC	1 cut(s)	241
FspBI	CTAG	3 cut(s)	117, 282, 452
GluI	GCNGC	1 cut(s)	241
HaeIII	GGCC	3 cut(s)	79, 143, 406
HgaI	GACGC	1 cut(s)	174
Hin1II	CATG	5 cut(s)	10, 46, 137, 162, 172
HinfI	GANTC	3 cut(s)	193, 260, 267
Hpy166II	GTNNAC	4 cut(s)	164, 325, 343, 514
Hpy188I	TCNGA	4 cut(s)	223, 307, 393, 412
Hpy188III	TCNNGA	3 cut(s)	257, 264, 271
Hpy8I	GTNNAC	4 cut(s)	164, 325, 343, 514
HpyAV	CCTTC	3 cut(s)	349, 398, 475
HpyCH4V	TGCA	2 cut(s)	158, 243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	2 cut(s)	411, 501
Hsp92II	CATG	5 cut(s)	10, 46, 137, 162, 172
Kzo9I	GATC	2 cut(s)	119, 229
LmnI	GCTCC	2 cut(s)	63, 436
LpnPI	CCDG	1 cut(s)	75
Lsp1109I	GCAGC	1 cut(s)	227
MaeI	CTAG	3 cut(s)	117, 282, 452
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	2 cut(s)	121, 231
MboI	GATC	2 cut(s)	119, 229
MboII	GAAGA	2 cut(s)	10, 433
MfeI	CAATTG	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	60
MlsI	TGGCCA	1 cut(s)	406
MluCI	AATT	3 cut(s)	233, 292, 361
MluNI	TGGCCA	1 cut(s)	406
MlyI	GAGTC	2 cut(s)	187, 254
MnlI	CCTC	2 cut(s)	267, 478
Mox20I	TGGCCA	1 cut(s)	406
Mph1103I	ATGCAT	1 cut(s)	160
MscI	TGGCCA	1 cut(s)	406
MseI	TTAA	2 cut(s)	468, 526
Msp20I	TGGCCA	1 cut(s)	406
MunI	CAATTG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	246
NdeII	GATC	2 cut(s)	119, 229
NlaIII	CATG	5 cut(s)	10, 46, 137, 162, 172
NlaIV	GGNNCC	2 cut(s)	220, 378
NmuCI	GTSAC	1 cut(s)	190
NsiI	ATGCAT	1 cut(s)	160
NspI	RCATGY	2 cut(s)	137, 162
PciI	ACATGT	1 cut(s)	133
PcsI	WCGNNNNNNNCGW	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	267
PkrI	GCNGC	1 cut(s)	242
PleI	GAGTC	2 cut(s)	187, 254
PpsI	GAGTC	2 cut(s)	187, 254
PpuMI	RGGWCCY	1 cut(s)	376
PscI	ACATGT	1 cut(s)	133
Psp5II	RGGWCCY	1 cut(s)	376
PspN4I	GGNNCC	2 cut(s)	220, 378
PspPI	GGNCC	2 cut(s)	77, 376
PspPPI	RGGWCCY	1 cut(s)	376
SaqAI	TTAA	2 cut(s)	468, 526
SatI	GCNGC	1 cut(s)	241
Sau3AI	GATC	2 cut(s)	119, 229
Sau96I	GGNCC	2 cut(s)	77, 376
SchI	GAGTC	2 cut(s)	187, 254
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	4 cut(s)	99, 287, 338, 403
SinI	GGWCC	1 cut(s)	376
Sse9I	AATT	3 cut(s)	233, 292, 361
SsiI	CCGC	1 cut(s)	148
SspI	AATATT	1 cut(s)	302
SspMI	CTAG	3 cut(s)	117, 282, 452
StyI	CCWWGG	1 cut(s)	93
TasI	AATT	3 cut(s)	233, 292, 361
TfiI	GAWTC	1 cut(s)	267
Tru1I	TTAA	2 cut(s)	468, 526
Tru9I	TTAA	2 cut(s)	468, 526
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	240
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	2 cut(s)	23, 434
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	2 cut(s)	292, 361
XceI	RCATGY	2 cut(s)	137, 162
XspI	CTAG	3 cut(s)	117, 282, 452
Zsp2I	ATGCAT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.