Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001444

Physical Location & Seq

Genomic Coordinates Forward (+)

4601010 .. 4602813

Gene Structure 1804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1065600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGAAGAAGACAATTTCCTGCAGGGCTGCGACGGTGGCTTTGGCGGCCTTGTGTTTGTTTTTCATCGTGTTCGAAATCAGCGTCTCTTCAACCTCCAGATTTCTTAAATATGCTGCTACTACTACTACTACATATTCAGCCAAGACTCAAGAGGAAGGGAATCATGAAAAAACGAAACTGATCGATCAGCCAAACTCTCACCCTTCAGAATACTTGCAACTTCCTGTGAAAAGACGAATCATCTGCGACCGTACTGATGTACGCTATGATCTTTGTTCAATCAACGGTCCAACTGTCTTGGACCCACCCACCTCCACATTCTTCACTATGGGCTCGGCCCAACCCCCACAGGTGGAAAAAGTCCAGCCCTACCCTCGAAAGTTCGAAGGCTTCATAATGCCTCACATCAGGAACCTCACCCTCACTTCCGGCCCACAAAGCCCACCATGTAAGGTCCGGCACAGTGTTCCGGCCCTAGTATTCAGTGCGGGAGGGTACACCGGAAACTTCTTCCATGATTTCAACGACGGGTTCATTCCTCTCTTCATCACCGTCAACACAATCTTCCCTGATCAAGAGATCGTGATCGTGGTTTCCGAAGCTCCCAATTGGTGGCCTAGTAAGTATGCAGATCTACTAGCCATGTTCACCAAGTACCCTATCATTATCCTAAAAAATGCTACTACCACCCATTGTTTTCCTTCAGCCACCATAGGCCTCATCTCGCATGGTTTCATGACCATAAACCAAACTTTACTACCAAAACCAAAATCGTTCATGGATTTTCGGGTCCTCCTAGAAAAGGCCTATGGCCCAAAAGCCCAGCCCAAAGTCTTGACATCCAAGCCCACAAGGTCACGCCCGAGACTCGTGTTGGCCAACCGCGAAATGGCACACGGGCGCGTGATTATGAACCAAAAACAATTGATTAGGTTAATTAAGAAAGTGGGTTTTGAATTGATTGTGTTTAATCCCAAGAGGATGACCCCGTTGCATGAATCTTATGCGTTATTGAATTCGAGCCATGCTATGATCGGGGTCCATGGAGCCGCATTGACGCACTCTTTTTTTCTTCGACCCGGTTCTGTGTTTGTTCAAGTGGTTCCGATTGGGATTGAATGGGGTGCATATGCTTTTTTTGGGAGGATGGCTAGGTCTTTGGATTTGGAATATTCGGAGTATAAGATTGGTGTGAACGAGAGTAGCTTGGCCGACAAGTACGGGAAGGAAAATTTGTTGGTAAAGGACCCATTTGCCCTTCAGAAAACAGGTTGGCCACCTGAGGTTATGAACATTTACCTCAAGGAGCAAAACGTCAAACTGGATTTGGAAAGATTTAAGAGTTGTTTGAAGAAGGCTTATACAAAGGCTACCAGATTTATGGAGAAAAATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

DUF563

Protein Analysis

466

Amino Acids

52.43

Weight (kDa)

9.59

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_61	PF04577	256 - 365	1.4e-13	Glycosyltransferase 61

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03360 AT2G03360 AT2G03370 AT2G03370
fragaria_vesca	FvH4_4g30540 FvH4_4g30550 FvH4_4g30551
malus_domestica	MD00G1177600.v1.1 MD00G1177700.v1.1 MD13G1066400.v1.1 MD16G1065500.v1.1 MD16G1065600.v1.1
prunus_persica	Prupe.1G281500_v2.0.a1 Prupe.1G281500_v2.0.a1 Prupe.1G281500_v2.0.a1 Prupe.1G281600_v2.0.a1
pyrus_communis	pycom16g05720
rosa_chinensis	RchiOBHm_Chr4g0438911 RchiOBHm_Chr4g0438921 RchiOBHm_Chr4g0438931
rosa_laevigata	RLG00000006317 RLG00000006318 RLG00000006320
rosa_multiflora	Rmu_co8325543.1_g000001 Rmu_sc0002505.1_g000027 Rmu_sc0005887.1_g000002 Rmu_sc0005887.1_g000004 Rmu_sc0032189.1_g000001 Rmu_sc0038333.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379930 Rroxscaffold_5G00379940 Rroxscaffold_5G00379950
rosa_rugosa	Rorug04G0314300 Rorug04G0314300 Rorug04G0314400
rosa_samantha	Rh4AG365000 Rh4AG365100 Rh4BG376100 Rh4BG376200 Rh4BG376300 Rh4CG390200 Rh4CG390300 Rh4CG390400 Rh4DG370800 Rh4DG370900 Rh4DG371000
rosa_wichuraiana	Rw0G007320 Rw0G007330 Rw0G007340 Rw0G016870 Rw0G016880 Rw0G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	612
AccII	CGCG	2 cut(s)	885, 903
AciI	CCGC	4 cut(s)	44, 488, 883, 1050
AcoI	YGGCCR	3 cut(s)	876, 1209, 1274
AcsI	RAATTY	2 cut(s)	1015, 1231
AcuI	CTGAAG	3 cut(s)	189, 687, 1244
AfaI	GTAC	5 cut(s)	253, 261, 497, 656, 1220
AfiI	CCNNNNNNNGG	4 cut(s)	352, 612, 802, 889
AgsI	TTSAA	8 cut(s)	90, 279, 523, 956, 1015, 1097, 1118, 1351
AluBI	AGCT	2 cut(s)	602, 1206
AluI	AGCT	2 cut(s)	602, 1206
Alw26I	GTCTC	2 cut(s)	88, 859
Ama87I	CYCGRG	1 cut(s)	862
ApeKI	GCWGC	2 cut(s)	26, 113
ApoI	RAATTY	2 cut(s)	1015, 1231
ArsI	GACNNNNNNTTYG	4 cut(s)	22, 54, 66, 98
AspLEI	GCGC	1 cut(s)	903
AsuC2I	CCSGG	1 cut(s)	1080
AsuHPI	GGTGA	4 cut(s)	191, 409, 541, 640
AsuII	TTCGAA	2 cut(s)	72, 384
AvaI	CYCGRG	1 cut(s)	862
AvaII	GGWCC	6 cut(s)	287, 301, 454, 790, 1039, 1246
AxyI	CCTNAGG	1 cut(s)	1281
BalI	TGGCCA	2 cut(s)	878, 1276
BanII	GRGCYC	1 cut(s)	335
BauI	CACGAG	1 cut(s)	869
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	2 cut(s)	13, 100
BccI	CCATC	1 cut(s)	1141
BcgI	CGANNNNNNTGC	2 cut(s)	225, 259
BclI	TGATCA	1 cut(s)	571
BcnI	CCSGG	1 cut(s)	1080
BcoDI	GTCTC	2 cut(s)	88, 859
BfaI	CTAG	5 cut(s)	476, 618, 638, 797, 1152
BfmI	CTRYAG	1 cut(s)	19
BglII	AGATCT	1 cut(s)	631
BisI	GCNGC	4 cut(s)	27, 45, 114, 1050
BlsI	GCNGC	4 cut(s)	28, 46, 115, 1051
Bme1390I	CCNGG	1 cut(s)	1080
Bme18I	GGWCC	6 cut(s)	287, 301, 454, 790, 1039, 1246
BmeT110I	CYCGRG	1 cut(s)	862
BmiI	GGNNCC	7 cut(s)	303, 413, 791, 1040, 1048, 1104, 1248
BmrFI	CCNGG	1 cut(s)	1080
BpiI	GAAGAC	1 cut(s)	14
BpmI	CTGGAG	1 cut(s)	79
Bpu14I	TTCGAA	2 cut(s)	72, 384
BpuEI	CTTGAG	2 cut(s)	132, 1286
BpuMI	CCSGG	1 cut(s)	1080
Bsa29I	ATCGAT	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	584
BsaJI	CCNNGG	1 cut(s)	1042
BsaWI	WCCGGW	1 cut(s)	500
Bsc4I	CCNNNNNNNGG	4 cut(s)	352, 612, 802, 889
Bse1I	ACTGG	1 cut(s)	1326
Bse21I	CCTNAGG	1 cut(s)	1281
Bse8I	GATNNNNATC	1 cut(s)	584
BseCI	ATCGAT	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	1042
BseGI	GGATG	3 cut(s)	839, 987, 1152
BseJI	GATNNNNATC	1 cut(s)	584
BseLI	CCNNNNNNNGG	4 cut(s)	352, 612, 802, 889
BseMII	CTCAG	1 cut(s)	1272
BseNI	ACTGG	1 cut(s)	1326
BseXI	GCAGC	2 cut(s)	13, 100
BseYI	CCCAGC	1 cut(s)	822
Bsh1236I	CGCG	2 cut(s)	885, 903
Bsh1285I	CGRYCG	1 cut(s)	250
BshVI	ATCGAT	1 cut(s)	183
BsiEI	CGRYCG	1 cut(s)	250
BsiHKCI	CYCGRG	1 cut(s)	862
BsiSI	CCGG	5 cut(s)	429, 457, 470, 501, 1080
BslI	CCNNNNNNNGG	4 cut(s)	352, 612, 802, 889
BsmAI	GTCTC	2 cut(s)	88, 859
BsmBI	CGTCTC	1 cut(s)	88
BsoBI	CYCGRG	1 cut(s)	862
Bsp119I	TTCGAA	2 cut(s)	72, 384
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp143I	GATC	8 cut(s)	180, 184, 268, 571, 579, 585, 631, 1032
Bsp19I	CCATGG	1 cut(s)	1042
BspACI	CCGC	4 cut(s)	44, 488, 883, 1050
BspCNI	CTCAG	1 cut(s)	1273
BspDI	ATCGAT	1 cut(s)	183
BspFNI	CGCG	2 cut(s)	885, 903
BspHI	TCATGA	2 cut(s)	163, 735
BspLI	GGNNCC	7 cut(s)	303, 413, 791, 1040, 1048, 1104, 1248
BspMAI	CTGCAG	1 cut(s)	23
BspT104I	TTCGAA	2 cut(s)	72, 384
BsrI	ACTGG	1 cut(s)	1326
BssECI	CCNNGG	1 cut(s)	1042
BssMI	GATC	8 cut(s)	180, 184, 268, 571, 579, 585, 631, 1032
BssSI	CACGAG	1 cut(s)	869
BssT1I	CCWWGG	1 cut(s)	1042
Bst2BI	CACGAG	1 cut(s)	869
Bst4CI	ACNGT	6 cut(s)	34, 251, 287, 295, 464, 553
Bst6I	CTCTTC	2 cut(s)	91, 548
BstBI	TTCGAA	2 cut(s)	72, 384
BstDEI	CTNAG	1 cut(s)	1281
BstDSI	CCRYGG	1 cut(s)	1042
BstENI	CCTNNNNNAGG	1 cut(s)	800
BstF5I	GGATG	3 cut(s)	839, 987, 1152
BstFNI	CGCG	2 cut(s)	885, 903
BstHHI	GCGC	1 cut(s)	903
BstKTI	GATC	8 cut(s)	183, 187, 271, 574, 582, 588, 634, 1035
BstMAI	GTCTC	2 cut(s)	88, 859
BstMBI	GATC	8 cut(s)	180, 184, 268, 571, 579, 585, 631, 1032
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 44, 438
BstSCI	CCNGG	1 cut(s)	1078
BstSFI	CTRYAG	1 cut(s)	19
BstUI	CGCG	2 cut(s)	885, 903
BstV1I	GCAGC	2 cut(s)	13, 100
BstV2I	GAAGAC	1 cut(s)	14
BstX2I	RGATCY	1 cut(s)	631
BstXI	CCANNNNNNTGG	1 cut(s)	1381
BstYI	RGATCY	1 cut(s)	631
Bsu15I	ATCGAT	1 cut(s)	183
Bsu36I	CCTNAGG	1 cut(s)	1281
BsuTUI	ATCGAT	1 cut(s)	183
BtgI	CCRYGG	1 cut(s)	1042
BtsCI	GGATG	3 cut(s)	839, 987, 1152
BtsIMutI	CAGTG	2 cut(s)	469, 490
CciI	TCATGA	2 cut(s)	163, 735
CfoI	GCGC	1 cut(s)	903
ClaI	ATCGAT	1 cut(s)	183
CseI	GACGC	2 cut(s)	70, 1066
Csp6I	GTAC	5 cut(s)	252, 260, 496, 655, 1219
CviQI	GTAC	5 cut(s)	252, 260, 496, 655, 1219
DdeI	CTNAG	1 cut(s)	1281
DpnI	GATC	8 cut(s)	182, 186, 270, 573, 581, 587, 633, 1034
DpnII	GATC	8 cut(s)	180, 184, 268, 571, 579, 585, 631, 1032
EaeI	YGGCCR	3 cut(s)	876, 1209, 1274
Eam1104I	CTCTTC	2 cut(s)	91, 548
EarI	CTCTTC	2 cut(s)	91, 548
Eco130I	CCWWGG	1 cut(s)	1042
Eco147I	AGGCCT	2 cut(s)	717, 806
Eco24I	GRGCYC	1 cut(s)	335
Eco47I	GGWCC	6 cut(s)	287, 301, 454, 790, 1039, 1246
Eco57I	CTGAAG	3 cut(s)	189, 687, 1244
Eco81I	CCTNAGG	1 cut(s)	1281
Eco88I	CYCGRG	1 cut(s)	862
EcoNI	CCTNNNNNAGG	1 cut(s)	800
EcoO109I	RGGNCCY	2 cut(s)	790, 1246
EcoRI	GAATTC	1 cut(s)	1015
EcoT14I	CCWWGG	1 cut(s)	1042
EcoT38I	GRGCYC	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	1042
Esp3I	CGTCTC	1 cut(s)	88
FauI	CCCGC	1 cut(s)	481
FauNDI	CATATG	1 cut(s)	1129
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	4 cut(s)	27, 45, 114, 1050
FokI	GGATG	3 cut(s)	826, 994, 1159
FriOI	GRGCYC	1 cut(s)	335
Fsp4HI	GCNGC	4 cut(s)	27, 45, 114, 1050
FspBI	CTAG	5 cut(s)	476, 618, 638, 797, 1152
GlaI	GCGC	1 cut(s)	902
GluI	GCNGC	4 cut(s)	27, 45, 114, 1050
GsaI	CCCAGC	1 cut(s)	826
GsuI	CTGGAG	1 cut(s)	79
HapII	CCGG	5 cut(s)	429, 457, 470, 501, 1080
HgaI	GACGC	2 cut(s)	70, 1066
HhaI	GCGC	1 cut(s)	903
Hin6I	GCGC	1 cut(s)	901
HinP1I	GCGC	1 cut(s)	901
HincII	GTYRAC	1 cut(s)	556
HindII	GTYRAC	1 cut(s)	556
HinfI	GANTC	5 cut(s)	145, 160, 237, 867, 998
HpaII	CCGG	5 cut(s)	429, 457, 470, 501, 1080
HphI	GGTGA	4 cut(s)	191, 409, 541, 640
Hpy166II	GTNNAC	4 cut(s)	498, 556, 648, 1195
Hpy188I	TCNGA	5 cut(s)	208, 598, 1107, 1177, 1263
Hpy188III	TCNNGA	8 cut(s)	96, 149, 164, 409, 575, 583, 736, 835
Hpy8I	GTNNAC	4 cut(s)	498, 556, 648, 1195
Hpy99I	CGWCG	2 cut(s)	34, 530
HpyAV	CCTTC	7 cut(s)	149, 213, 380, 711, 1219, 1268, 1348
HpyCH4III	ACNGT	6 cut(s)	34, 251, 287, 295, 464, 553
HpyCH4IV	ACGT	1 cut(s)	1314
HpyCH4V	TGCA	5 cut(s)	21, 217, 629, 994, 1127
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 44, 438
HpyF3I	CTNAG	1 cut(s)	1281
HpySE526I	ACGT	1 cut(s)	1314
HspAI	GCGC	1 cut(s)	901
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	8 cut(s)	180, 184, 268, 571, 579, 585, 631, 1032
LmnI	GCTCC	3 cut(s)	607, 1046, 1306
Lsp1109I	GCAGC	2 cut(s)	13, 100
MaeI	CTAG	5 cut(s)	476, 618, 638, 797, 1152
MaeII	ACGT	1 cut(s)	1314
MaeIII	GTNAC	1 cut(s)	855
MalI	GATC	8 cut(s)	182, 186, 270, 573, 581, 587, 633, 1034
MboI	GATC	8 cut(s)	180, 184, 268, 571, 579, 585, 631, 1032
MboII	GAAGA	9 cut(s)	16, 19, 78, 313, 502, 535, 556, 1064, 1363
MfeI	CAATTG	2 cut(s)	607, 923
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	1 cut(s)	335
MlsI	TGGCCA	2 cut(s)	878, 1276
MluCI	AATT	7 cut(s)	12, 607, 923, 936, 956, 1015, 1231
MluNI	TGGCCA	2 cut(s)	878, 1276
MlyI	GAGTC	2 cut(s)	139, 861
MmeI	TCCRAC	1 cut(s)	314
Mox20I	TGGCCA	2 cut(s)	878, 1276
MscI	TGGCCA	2 cut(s)	878, 1276
MseI	TTAA	6 cut(s)	105, 935, 939, 969, 1338, 1396
Msp20I	TGGCCA	2 cut(s)	878, 1276
MspI	CCGG	5 cut(s)	429, 457, 470, 501, 1080
MspR9I	CCNGG	1 cut(s)	1080
MunI	CAATTG	2 cut(s)	607, 923
MvnI	CGCG	2 cut(s)	885, 903
MwoI	GCNNNNNNNGC	3 cut(s)	35, 44, 438
NciI	CCSGG	1 cut(s)	1080
NcoI	CCATGG	1 cut(s)	1042
NdeI	CATATG	1 cut(s)	1129
NdeII	GATC	8 cut(s)	180, 184, 268, 571, 579, 585, 631, 1032
NlaIV	GGNNCC	7 cut(s)	303, 413, 791, 1040, 1048, 1104, 1248
NmeAIII	GCCGAG	1 cut(s)	314
NmuCI	GTSAC	1 cut(s)	855
NspV	TTCGAA	2 cut(s)	72, 384
PacI	TTAATTAA	1 cut(s)	939
PagI	TCATGA	2 cut(s)	163, 735
PceI	AGGCCT	2 cut(s)	717, 806
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 594
PfeI	GAWTC	3 cut(s)	160, 237, 998
PflMI	CCANNNNNTGG	1 cut(s)	612
PkrI	GCNGC	4 cut(s)	28, 46, 115, 1051
PleI	GAGTC	2 cut(s)	139, 861
PpsI	GAGTC	2 cut(s)	139, 861
PpuMI	RGGWCCY	2 cut(s)	790, 1246
Psp5II	RGGWCCY	2 cut(s)	790, 1246
PspFI	CCCAGC	1 cut(s)	822
PspN4I	GGNNCC	7 cut(s)	303, 413, 791, 1040, 1048, 1104, 1248
PspPPI	RGGWCCY	2 cut(s)	790, 1246
PstI	CTGCAG	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	5 cut(s)	253, 261, 497, 656, 1220
RsaNI	GTAC	5 cut(s)	252, 260, 496, 655, 1219
SaqAI	TTAA	6 cut(s)	105, 935, 939, 969, 1338, 1396
SatI	GCNGC	4 cut(s)	27, 45, 114, 1050
Sau3AI	GATC	8 cut(s)	180, 184, 268, 571, 579, 585, 631, 1032
SbfI	CCTGCAGG	1 cut(s)	23
SchI	GAGTC	2 cut(s)	139, 861
ScrFI	CCNGG	1 cut(s)	1080
SdaI	CCTGCAGG	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	335
SfcI	CTRYAG	1 cut(s)	19
SfuI	TTCGAA	2 cut(s)	72, 384
SinI	GGWCC	6 cut(s)	287, 301, 454, 790, 1039, 1246
SmlI	CTYRAG	2 cut(s)	147, 1301
SmoI	CTYRAG	2 cut(s)	147, 1301
Sse8387I	CCTGCAGG	1 cut(s)	23
Sse9I	AATT	7 cut(s)	12, 607, 923, 936, 956, 1015, 1231
SseBI	AGGCCT	2 cut(s)	717, 806
SsiI	CCGC	4 cut(s)	44, 488, 883, 1050
SspI	AATATT	1 cut(s)	1172
SspMI	CTAG	5 cut(s)	476, 618, 638, 797, 1152
StuI	AGGCCT	2 cut(s)	717, 806
StyD4I	CCNGG	1 cut(s)	1078
StyI	CCWWGG	1 cut(s)	1042
TaaI	ACNGT	6 cut(s)	34, 251, 287, 295, 464, 553
TaiI	ACGT	1 cut(s)	1317
TaqI	TCGA	6 cut(s)	72, 183, 376, 384, 1019, 1075
TasI	AATT	7 cut(s)	12, 607, 923, 936, 956, 1015, 1231
TauI	GCSGC	2 cut(s)	47, 1052
TfiI	GAWTC	3 cut(s)	160, 237, 998
Tru1I	TTAA	6 cut(s)	105, 935, 939, 969, 1338, 1396
Tru9I	TTAA	6 cut(s)	105, 935, 939, 969, 1338, 1396
TscAI	CASTG	2 cut(s)	469, 490
TseFI	GTSAC	1 cut(s)	855
TseI	GCWGC	2 cut(s)	26, 113
Tsp45I	GTSAC	1 cut(s)	855
TspRI	CASTG	2 cut(s)	469, 490
Van91I	CCANNNNNTGG	1 cut(s)	612
VpaK11BI	GGWCC	6 cut(s)	287, 301, 454, 790, 1039, 1246
XagI	CCTNNNNNAGG	1 cut(s)	800
XapI	RAATTY	2 cut(s)	1015, 1231
XcmI	CCANNNNNNNNNTGG	1 cut(s)	886
XspI	CTAG	5 cut(s)	476, 618, 638, 797, 1152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.