RchiOBHm_Chr4g0438921

Protein of unknown function (DUF563)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001444
Physical Location & Seq
Forward (+)
61447916 .. 61449292
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40700

Sequence Viewer

Length: 1377 bp
ATGAAAGTGATATTAACACTTCACCTTTCTCTTATTACACTTCATCTTATTTTTTTTTATTTTTTTTTGAAAAGACACTTCATCTTCTTGAATTCTTTTAATATTTGTTATAAACCGACTGCAGAAACAACTCGTGTGGAATCAAAGCTGATTAGTAAACAACTCCATCACCCACCGAAGTCTTTGGAACTTCGTTTGGAGAGTCCGATCATCTGTGACCGAACCTCTATTCGTTATGATCTCTGCTCAATCAACGGCCCAACAGTTTTGGATCCGACCACATCGACTTTCTTCACTATGAACTCTACCGAAACTCCATTGGTAGAAAGAATCAGACCCTATCCTCGAAAATTCGAAGACCTCATAATGGCTGATATCAAGAACTTCACACTCACTGTCGGACCACGAATCCCAATGTGTAGAGTTCAACACAATGCTCCTGCGCTAGTATTCACCGCCGGTGGATACACCGGAAACTTTTGGCATGACTTCAACGATGGATTCATCCCTCTCTTTATCACCGCCAACACCATATTCCCAGATCAAGACTTCGTCATTGTGGTTTCCGAAGCTCCCAAGTGGTGGCCTAGTAAGTATGCCGATTTACTACGCATGTTCACCAATCATCCTATTGTCAACCTAGGAAGTGATACCACCACCCATTGTTTTCCTTCTGCCAAGCTAGGCCTTATATCACATGGCTTCATGATCATAAACCAAACATTAATACCCAACTCAAAGACATACATGAATTTTCGTGAGCTCCTTGGCAAAGCCTATAACCAACTAGCCCAAATCCAAACCAAAATTTTCACCTCTAAGCCCACAAATCCTCGGCCCAGACTTGTTTTGGCGAGCCGACGTCAGGCCACTGGACGCACGATCATGAACCAAGCCCAAGTTATTCGTTTGATCAAGAAAGTAGGTTTTGATGTGGTGGTATTTGAGCCTAAAACCAAAACCTCATTGCAAGAATCTTATGCATTACTGAATTCAAGCCATGCTTTTGTTGGGGTTCATGGAGCTGCACTTACGCACTCATTGTTCCTCCGGCCGGGCGCGGTGTTCGTGCAGGTGGTGCCAATAGGAATAGGCTGGGCGGCGGAAGCGTTTTTCGGGAGAGTAGCAAAAGGGTTGAATTTGGAGTATATTGAGTACAAAATTGGTGTGGAAGAGAGTAGCTTGGTGGACAAGTTTGGAAAGGACAGTTTGTTGGTTAGGGATCCATTTGCTCTTCAAAAAAGGGGCTGGCCCCCGGAGGTTATGAACACTTACTTGAAAGAACAGAATGTGAAACTGGATTTGGTTAGGTTCAAGAGATATTTGAAGAAAGCTTTTAAGAAAGCTAAGAGATTTATGGACAATGAGGGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
DUF563

Protein Analysis

458

Amino Acids

52.32

Weight (kDa)

9.71

Isoelectric Point (pI)

27.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 161 - 357 1.7e-15 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 111
AarI CACCTGC 1 cut(s) 1063
AatII GACGTC 1 cut(s) 865
Acc36I ACCTGC 1 cut(s) 1063
AccB1I GGYRCC 1 cut(s) 1078
AccB7I CCANNNNNTGG 1 cut(s) 582
AccII CGCG 1 cut(s) 1061
AciI CCGC 5 cut(s) 456, 522, 1061, 1100, 1103
AclWI GGATC 4 cut(s) 266, 279, 1217, 1230
AcoI YGGCCR 1 cut(s) 1052
AcsI RAATTY 6 cut(s) 91, 350, 751, 807, 991, 1138
AcyI GRCGYC 1 cut(s) 862
AfaI GTAC 1 cut(s) 1157
AfiI CCNNNNNNNGG 4 cut(s) 367, 582, 865, 1054
AjuI GAANNNNNNNTTGG 4 cut(s) 518, 550, 1286, 1318
AluBI AGCT 8 cut(s) 148, 572, 682, 763, 1025, 1182, 1334, 1346
AluI AGCT 8 cut(s) 148, 572, 682, 763, 1025, 1182, 1334, 1346
Alw21I GWGCWC 1 cut(s) 765
AlwI GGATC 4 cut(s) 266, 279, 1217, 1230
AoxI GGCC 7 cut(s) 256, 584, 685, 836, 867, 1052, 1250
ApeKI GCWGC 1 cut(s) 1025
ApoI RAATTY 6 cut(s) 91, 350, 751, 807, 991, 1138
AseI ATTAAT 1 cut(s) 725
AspA2I CCTAGG 1 cut(s) 640
AspLEI GCGC 2 cut(s) 445, 1061
AspS9I GGNCC 4 cut(s) 257, 401, 837, 1251
AsuC2I CCSGG 2 cut(s) 1056, 1256
AsuHPI GGTGA 6 cut(s) 14, 161, 445, 511, 610, 805
AsuII TTCGAA 1 cut(s) 354
AvaII GGWCC 1 cut(s) 401
AvrII CCTAGG 1 cut(s) 640
BamHI GGATCC 2 cut(s) 271, 1222
BanI GGYRCC 1 cut(s) 1078
BanII GRGCYC 1 cut(s) 765
BauI CACGAG 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 363
Bbv12I GWGCWC 1 cut(s) 765
BbvI GCAGC 1 cut(s) 1012
BccI CCATC 2 cut(s) 174, 491
BceAI ACGGC 1 cut(s) 271
BciVI GTATCC 1 cut(s) 458
BclI TGATCA 2 cut(s) 708, 912
BcnI CCSGG 2 cut(s) 1056, 1256
BfaI CTAG 5 cut(s) 446, 588, 641, 683, 788
BfmI CTRYAG 1 cut(s) 120
BfuAI ACCTGC 1 cut(s) 1063
BfuI GTATCC 1 cut(s) 458
BisI GCNGC 2 cut(s) 1026, 1101
BlnI CCTAGG 1 cut(s) 640
BlsI GCNGC 2 cut(s) 1027, 1102
Bme1390I CCNGG 2 cut(s) 1056, 1256
Bme18I GGWCC 1 cut(s) 401
BmgT120I GGNCC 4 cut(s) 257, 401, 837, 1251
BmiI GGNNCC 4 cut(s) 273, 1080, 1224, 1253
BmrFI CCNGG 2 cut(s) 1056, 1256
BpiI GAAGAC 1 cut(s) 363
Bpu14I TTCGAA 1 cut(s) 354
BpuMI CCSGG 2 cut(s) 1056, 1256
BsaHI GRCGYC 1 cut(s) 862
BsaJI CCNNGG 4 cut(s) 640, 766, 833, 1254
BsaWI WCCGGW 1 cut(s) 470
BsaXI ACNNNNNCTCC 2 cut(s) 298, 328
Bsc4I CCNNNNNNNGG 4 cut(s) 367, 582, 865, 1054
Bse118I RCCGGY 1 cut(s) 458
Bse1I ACTGG 2 cut(s) 877, 1302
Bse3DI GCAATG 1 cut(s) 965
BseDI CCNNGG 4 cut(s) 640, 766, 833, 1254
BseGI GGATG 2 cut(s) 504, 625
BseLI CCNNNNNNNGG 4 cut(s) 367, 582, 865, 1054
BseMI GCAATG 1 cut(s) 965
BseNI ACTGG 2 cut(s) 877, 1302
BseX3I CGGCCG 1 cut(s) 1052
BseXI GCAGC 1 cut(s) 1012
BseYI CCCAGC 1 cut(s) 1095
BsgI GTGCAG 2 cut(s) 1011, 1091
Bsh1236I CGCG 1 cut(s) 1061
Bsh1285I CGRYCG 1 cut(s) 1055
BshFI GGCC 7 cut(s) 258, 586, 687, 838, 869, 1054, 1252
BshNI GGYRCC 1 cut(s) 1078
BsiEI CGRYCG 1 cut(s) 1055
BsiHKAI GWGCWC 1 cut(s) 765
BsiSI CCGG 5 cut(s) 459, 471, 1051, 1055, 1256
BslI CCNNNNNNNGG 4 cut(s) 367, 582, 865, 1054
BsnI GGCC 7 cut(s) 258, 586, 687, 838, 869, 1054, 1252
Bsp119I TTCGAA 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 765
Bsp143I GATC 8 cut(s) 207, 238, 271, 541, 708, 882, 912, 1222
BspACI CCGC 5 cut(s) 456, 522, 1061, 1100, 1103
BspANI GGCC 7 cut(s) 258, 586, 687, 838, 869, 1054, 1252
BspFNI CGCG 1 cut(s) 1061
BspHI TCATGA 2 cut(s) 705, 885
BspLI GGNNCC 4 cut(s) 273, 1080, 1224, 1253
BspMAI CTGCAG 1 cut(s) 124
BspMI ACCTGC 1 cut(s) 1063
BspPI GGATC 4 cut(s) 266, 279, 1217, 1230
BspQI GCTCTTC 1 cut(s) 1239
BspT104I TTCGAA 1 cut(s) 354
BspT107I GGYRCC 1 cut(s) 1078
BsrDI GCAATG 1 cut(s) 965
BsrFI RCCGGY 1 cut(s) 458
BsrI ACTGG 2 cut(s) 877, 1302
BssAI RCCGGY 1 cut(s) 458
BssECI CCNNGG 4 cut(s) 640, 766, 833, 1254
BssMI GATC 8 cut(s) 207, 238, 271, 541, 708, 882, 912, 1222
BssNI GRCGYC 1 cut(s) 862
BssSI CACGAG 1 cut(s) 132
BssT1I CCWWGG 2 cut(s) 640, 766
Bst2BI CACGAG 1 cut(s) 132
Bst4CI ACNGT 3 cut(s) 265, 397, 1208
Bst6I CTCTTC 2 cut(s) 1167, 1239
BstACI GRCGYC 1 cut(s) 862
BstAPI GCANNNNNTGC 1 cut(s) 1078
BstBI TTCGAA 1 cut(s) 354
BstC8I GCNNGC 2 cut(s) 856, 1250
BstDEI CTNAG 2 cut(s) 819, 1347
BstF5I GGATG 2 cut(s) 504, 625
BstFNI CGCG 1 cut(s) 1061
BstHHI GCGC 2 cut(s) 445, 1061
BstKTI GATC 8 cut(s) 210, 241, 274, 544, 711, 885, 915, 1225
BstMBI GATC 8 cut(s) 207, 238, 271, 541, 708, 882, 912, 1222
BstMCI CGRYCG 1 cut(s) 1055
BstMWI GCNNNNNNNGC 2 cut(s) 1078, 1106
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 2 cut(s) 1054, 1254
BstSFI CTRYAG 1 cut(s) 120
BstUI CGCG 1 cut(s) 1061
BstV1I GCAGC 1 cut(s) 1012
BstV2I GAAGAC 1 cut(s) 363
BstX2I RGATCY 2 cut(s) 271, 1222
BstYI RGATCY 2 cut(s) 271, 1222
BstZI CGGCCG 1 cut(s) 1052
BsuI GTATCC 1 cut(s) 458
BsuRI GGCC 7 cut(s) 258, 586, 687, 838, 869, 1054, 1252
BtsCI GGATG 2 cut(s) 504, 625
BtsIMutI CAGTG 2 cut(s) 393, 870
BveI ACCTGC 1 cut(s) 1063
Cac8I GCNNGC 2 cut(s) 856, 1250
CciI TCATGA 2 cut(s) 705, 885
CfoI GCGC 2 cut(s) 445, 1061
Cfr10I RCCGGY 1 cut(s) 458
Cfr13I GGNCC 4 cut(s) 257, 401, 837, 1251
CseI GACGC 1 cut(s) 885
Csp6I GTAC 1 cut(s) 1156
CspCI CAANNNNNGTGG 2 cut(s) 117, 152
CviAII CATG 8 cut(s) 485, 613, 698, 706, 748, 886, 1001, 1019
CviQI GTAC 1 cut(s) 1156
DdeI CTNAG 2 cut(s) 819, 1347
DpnI GATC 8 cut(s) 209, 240, 273, 543, 710, 884, 914, 1224
DpnII GATC 8 cut(s) 207, 238, 271, 541, 708, 882, 912, 1222
EaeI YGGCCR 1 cut(s) 1052
EagI CGGCCG 1 cut(s) 1052
Eam1104I CTCTTC 2 cut(s) 1167, 1239
EarI CTCTTC 2 cut(s) 1167, 1239
EciI GGCGGA 1 cut(s) 1118
Ecl136II GAGCTC 1 cut(s) 763
EclXI CGGCCG 1 cut(s) 1052
Eco130I CCWWGG 2 cut(s) 640, 766
Eco147I AGGCCT 1 cut(s) 687
Eco24I GRGCYC 1 cut(s) 765
Eco32I GATATC 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 401
Eco52I CGGCCG 1 cut(s) 1052
Eco53kI GAGCTC 1 cut(s) 763
EcoICRI GAGCTC 1 cut(s) 763
EcoRI GAATTC 2 cut(s) 91, 991
EcoRV GATATC 1 cut(s) 376
EcoT14I CCWWGG 2 cut(s) 640, 766
EcoT22I ATGCAT 1 cut(s) 985
EcoT38I GRGCYC 1 cut(s) 765
ErhI CCWWGG 2 cut(s) 640, 766
FaeI CATG 8 cut(s) 488, 616, 701, 709, 751, 889, 1004, 1022
FalI AAGNNNNNCTT 2 cut(s) 988, 1020
FatI CATG 8 cut(s) 484, 612, 697, 705, 747, 885, 1000, 1018
FbaI TGATCA 2 cut(s) 708, 912
Fnu4HI GCNGC 2 cut(s) 1026, 1101
FokI GGATG 2 cut(s) 491, 612
FriOI GRGCYC 1 cut(s) 765
Fsp4HI GCNGC 2 cut(s) 1026, 1101
FspBI CTAG 5 cut(s) 446, 588, 641, 683, 788
GlaI GCGC 2 cut(s) 444, 1060
GluI GCNGC 2 cut(s) 1026, 1101
GsaI CCCAGC 1 cut(s) 1099
HaeIII GGCC 7 cut(s) 258, 586, 687, 838, 869, 1054, 1252
HapII CCGG 5 cut(s) 459, 471, 1051, 1055, 1256
HgaI GACGC 1 cut(s) 885
HhaI GCGC 2 cut(s) 445, 1061
Hin1I GRCGYC 1 cut(s) 862
Hin1II CATG 8 cut(s) 488, 616, 701, 709, 751, 889, 1004, 1022
Hin6I GCGC 2 cut(s) 443, 1059
HinP1I GCGC 2 cut(s) 443, 1059
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HindIII AAGCTT 1 cut(s) 1332
HinfI GANTC 6 cut(s) 140, 202, 330, 408, 501, 974
HpaII CCGG 5 cut(s) 459, 471, 1051, 1055, 1256
HphI GGTGA 6 cut(s) 14, 161, 445, 511, 610, 805
Hpy166II GTNNAC 4 cut(s) 158, 618, 637, 1189
Hpy188I TCNGA 5 cut(s) 207, 276, 335, 401, 568
Hpy188III TCNNGA 9 cut(s) 88, 379, 545, 706, 758, 886, 916, 1117, 1315
Hpy8I GTNNAC 4 cut(s) 158, 618, 637, 1189
Hpy99I CGWCG 1 cut(s) 864
HpyAV CCTTC 1 cut(s) 681
HpyCH4III ACNGT 3 cut(s) 265, 397, 1208
HpyCH4IV ACGT 1 cut(s) 862
HpyCH4V TGCA 5 cut(s) 122, 970, 983, 1028, 1072
HpyF10VI GCNNNNNNNGC 2 cut(s) 1078, 1106
HpyF3I CTNAG 2 cut(s) 819, 1347
HpySE526I ACGT 1 cut(s) 862
Hsp92I GRCGYC 1 cut(s) 862
Hsp92II CATG 8 cut(s) 488, 616, 701, 709, 751, 889, 1004, 1022
HspAI GCGC 2 cut(s) 443, 1059
Ksp22I TGATCA 2 cut(s) 708, 912
Kzo9I GATC 8 cut(s) 207, 238, 271, 541, 708, 882, 912, 1222
LguI GCTCTTC 1 cut(s) 1239
LmnI GCTCC 4 cut(s) 442, 577, 768, 1022
Lsp1109I GCAGC 1 cut(s) 1012
MaeI CTAG 5 cut(s) 446, 588, 641, 683, 788
MaeII ACGT 1 cut(s) 862
MaeIII GTNAC 1 cut(s) 215
MalI GATC 8 cut(s) 209, 240, 273, 543, 710, 884, 914, 1224
MboI GATC 8 cut(s) 207, 238, 271, 541, 708, 882, 912, 1222
MboII GAAGA 6 cut(s) 76, 283, 368, 1184, 1226, 1339
MflI RGATCY 2 cut(s) 271, 1222
MhlI GDGCHC 1 cut(s) 765
MluCI AATT 7 cut(s) 91, 350, 751, 807, 991, 1138, 1161
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 2 cut(s) 299, 379
Mph1103I ATGCAT 1 cut(s) 985
MseI TTAA 4 cut(s) 14, 99, 725, 1338
MslI CAYNNNNRTG 1 cut(s) 884
MspI CCGG 5 cut(s) 459, 471, 1051, 1055, 1256
MspR9I CCNGG 2 cut(s) 1056, 1256
MvnI CGCG 1 cut(s) 1061
MwoI GCNNNNNNNGC 2 cut(s) 1078, 1106
NciI CCSGG 2 cut(s) 1056, 1256
NdeII GATC 8 cut(s) 207, 238, 271, 541, 708, 882, 912, 1222
NlaIII CATG 8 cut(s) 488, 616, 701, 709, 751, 889, 1004, 1022
NlaIV GGNNCC 4 cut(s) 273, 1080, 1224, 1253
NmeAIII GCCGAG 1 cut(s) 814
NmuCI GTSAC 1 cut(s) 215
NsiI ATGCAT 1 cut(s) 985
NspI RCATGY 1 cut(s) 616
NspV TTCGAA 1 cut(s) 354
PagI TCATGA 2 cut(s) 705, 885
PaqCI CACCTGC 1 cut(s) 1063
PceI AGGCCT 1 cut(s) 687
PciSI GCTCTTC 1 cut(s) 1239
PfeI GAWTC 5 cut(s) 140, 330, 408, 501, 974
PflFI GACNNNGTC 1 cut(s) 551
PflMI CCANNNNNTGG 1 cut(s) 582
PkrI GCNGC 2 cut(s) 1027, 1102
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PshBI ATTAAT 1 cut(s) 725
PsiI TTATAA 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 765
PspFI CCCAGC 1 cut(s) 1095
PspN4I GGNNCC 4 cut(s) 273, 1080, 1224, 1253
PspPI GGNCC 4 cut(s) 257, 401, 837, 1251
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 2 cut(s) 271, 1222
PsyI GACNNNGTC 1 cut(s) 551
RsaI GTAC 1 cut(s) 1157
RsaNI GTAC 1 cut(s) 1156
RseI CAYNNNNRTG 1 cut(s) 884
SacI GAGCTC 1 cut(s) 765
SapI GCTCTTC 1 cut(s) 1239
SaqAI TTAA 4 cut(s) 14, 99, 725, 1338
SatI GCNGC 2 cut(s) 1026, 1101
Sau3AI GATC 8 cut(s) 207, 238, 271, 541, 708, 882, 912, 1222
Sau96I GGNCC 4 cut(s) 257, 401, 837, 1251
SchI GAGTC 1 cut(s) 211
ScrFI CCNGG 2 cut(s) 1056, 1256
SduI GDGCHC 1 cut(s) 765
SfcI CTRYAG 1 cut(s) 120
SfuI TTCGAA 1 cut(s) 354
SgrAI CRCCGGYG 1 cut(s) 458
SinI GGWCC 1 cut(s) 401
SmiMI CAYNNNNRTG 1 cut(s) 884
Sse9I AATT 7 cut(s) 91, 350, 751, 807, 991, 1138, 1161
SseBI AGGCCT 1 cut(s) 687
SsiI CCGC 5 cut(s) 456, 522, 1061, 1100, 1103
SspI AATATT 1 cut(s) 103
SspMI CTAG 5 cut(s) 446, 588, 641, 683, 788
SstI GAGCTC 1 cut(s) 765
StuI AGGCCT 1 cut(s) 687
StyD4I CCNGG 2 cut(s) 1054, 1254
StyI CCWWGG 2 cut(s) 640, 766
TaaI ACNGT 3 cut(s) 265, 397, 1208
TaiI ACGT 1 cut(s) 865
TaqI TCGA 3 cut(s) 284, 346, 354
TaqII GACCGA 1 cut(s) 234
TasI AATT 7 cut(s) 91, 350, 751, 807, 991, 1138, 1161
TatI WGTACW 1 cut(s) 1155
TauI GCSGC 1 cut(s) 1103
TfiI GAWTC 5 cut(s) 140, 330, 408, 501, 974
Tru1I TTAA 4 cut(s) 14, 99, 725, 1338
Tru9I TTAA 4 cut(s) 14, 99, 725, 1338
TscAI CASTG 2 cut(s) 400, 877
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 1 cut(s) 1025
Tsp45I GTSAC 1 cut(s) 215
TspRI CASTG 2 cut(s) 400, 877
Tth111I GACNNNGTC 1 cut(s) 551
Van91I CCANNNNNTGG 1 cut(s) 582
VpaK11BI GGWCC 1 cut(s) 401
VspI ATTAAT 1 cut(s) 725
XapI RAATTY 6 cut(s) 91, 350, 751, 807, 991, 1138
XceI RCATGY 1 cut(s) 616
XcmI CCANNNNNNNNNTGG 2 cut(s) 847, 1007
XmaJI CCTAGG 1 cut(s) 640
XspI CTAG 5 cut(s) 446, 588, 641, 683, 788
ZraI GACGTC 1 cut(s) 863
Zsp2I ATGCAT 1 cut(s) 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.