Prupe.1G281600_v2.0.a1

Protein of unknown function (DUF563)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0001444
Physical Location & Seq
Reverse (-)
28462795 .. 28464227
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G281600.1

Sequence Viewer

Length: 921 bp
ATGTGGATCTCCTGTACCCGTTCTCACAGGTACTACGATTTCTGTTTCATCAACGGTTCAACAATTTTGGACCCCACCACCTCCACATCCTTCATGGCGGACCCCGCAAGCCCACCCTTGGTGGAGAAAATCAAGCCTTACCCTCGAAAGTTCGAGAATTCAACAATGTCGGGTATCAAAGAGCTGATCCTTACCTCAGGCCCACGAGGCCCAAAATGCCAAATCCAACACAATGCCCCAGCCCTTGTATTCAGTGCGGGCAAGTACACCGGAAACGCACGTGATTGGTGGGTTAGTAGGTACGGAGATTTACTACGAACCTTTATAAAGCACCCGATCATAAACCTCGATAATGATACTGCCAACCACTGTTTTACTTCTGCCAGTGTGGGTCTTATATCCCATGGGCTTGTGACCATAAATCCTAAATTGTTACATACCCCAAAAACGTTGCAAGCGGCGGAGAAGGTTGGTTTTGAAGTTGTTGTTTTTGTGCCATCTTCTACGACCGATATGCATGTGGCTTATAATTTACTTAGCAAGAGTCATGCAATGGTTGGTGTGCATGGAGCTGCCATGACCCACTTGTTGTTTATGAGGCCTGGTTCGGTGTTCATGCAAATTGTGCATCTGGGCACCCATTGGTTGGCAAATGTGTGCTATGAAAGTCCAGCTAGGGCTATGGAGTTGCAATACATTGACTATAGGATCAACGTAGAGGAGAGCAGCTTGGTAGACAAGTATGGCAAGGATGATATTGTGGTCAAGGACCCGGTTTCTAAAATGGGTTCCAATTGGTCCATGGAGATTATGAAGATTTATCTCAAGGAGCAAAACGTGAAGTTGGATTTGGTTAGGTTTAATTGGGTTTTGAAGGCAGCTTATGACAAGGCCAAGAAATTCATGGACAAGGAAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
DUF563

Protein Analysis

307

Amino Acids

34.48

Weight (kDa)

8.93

Isoelectric Point (pI)

24.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 326, 528
AccB1I GGYRCC 1 cut(s) 635
AccB7I CCANNNNNTGG 1 cut(s) 646
AccI GTMKAC 1 cut(s) 735
AciI CCGC 5 cut(s) 98, 105, 257, 458, 461
AclI AACGTT 1 cut(s) 449
AclWI GGATC 3 cut(s) 14, 181, 716
AcsI RAATTY 2 cut(s) 157, 899
AcvI CACGTG 1 cut(s) 281
AfaI GTAC 4 cut(s) 16, 32, 266, 302
AfiI CCNNNNNNNGG 2 cut(s) 118, 646
AgsI TTSAA 4 cut(s) 60, 162, 479, 874
AjnI CCWGG 1 cut(s) 601
AjuI GAANNNNNNNTTGG 2 cut(s) 833, 865
AluBI AGCT 5 cut(s) 184, 572, 674, 729, 881
AluI AGCT 5 cut(s) 184, 572, 674, 729, 881
AlwI GGATC 3 cut(s) 14, 181, 716
AoxI GGCC 4 cut(s) 199, 208, 599, 891
ApeKI GCWGC 3 cut(s) 572, 726, 878
ApoI RAATTY 2 cut(s) 157, 899
AspS9I GGNCC 6 cut(s) 70, 100, 200, 209, 769, 798
AsuC2I CCSGG 1 cut(s) 773
AvaII GGWCC 4 cut(s) 70, 100, 769, 798
AxyI CCTNAGG 1 cut(s) 196
BaeGI GKGCMC 1 cut(s) 638
BanI GGYRCC 1 cut(s) 635
BauI CACGAG 1 cut(s) 204
BbrPI CACGTG 1 cut(s) 281
BbvI GCAGC 3 cut(s) 559, 738, 890
BccI CCATC 1 cut(s) 505
BcgI CGANNNNNNTGC 2 cut(s) 496, 530
BciT130I CCWGG 1 cut(s) 603
BcnI CCSGG 1 cut(s) 773
BfaI CTAG 1 cut(s) 675
BfmI CTRYAG 1 cut(s) 703
BglI GCCNNNNNGGC 1 cut(s) 207
BisI GCNGC 4 cut(s) 459, 573, 727, 879
BlsI GCNGC 4 cut(s) 460, 574, 728, 880
Bme1390I CCNGG 2 cut(s) 603, 773
Bme18I GGWCC 4 cut(s) 70, 100, 769, 798
BmgT120I GGNCC 6 cut(s) 70, 100, 200, 209, 769, 798
BmiI GGNNCC 5 cut(s) 72, 102, 637, 771, 790
BmrFI CCNGG 2 cut(s) 603, 773
BmsI GCATC 1 cut(s) 637
BpuEI CTTGAG 1 cut(s) 809
BpuMI CCSGG 1 cut(s) 773
BsaAI YACGTR 1 cut(s) 281
BsaJI CCNNGG 3 cut(s) 117, 403, 801
BsaWI WCCGGW 1 cut(s) 269
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 646
Bse1I ACTGG 1 cut(s) 384
Bse21I CCTNAGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 558
BseBI CCWGG 1 cut(s) 603
BseDI CCNNGG 3 cut(s) 117, 403, 801
BseGI GGATG 2 cut(s) 86, 757
BseLI CCNNNNNNNGG 2 cut(s) 118, 646
BseMI GCAATG 1 cut(s) 558
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 384
BseRI GAGGAG 1 cut(s) 734
BseSI GKGCMC 1 cut(s) 638
BseXI GCAGC 3 cut(s) 559, 738, 890
BseYI CCCAGC 1 cut(s) 238
Bsh1285I CGRYCG 1 cut(s) 510
BshFI GGCC 4 cut(s) 201, 210, 601, 893
BshNI GGYRCC 1 cut(s) 635
BsiEI CGRYCG 1 cut(s) 510
BsiSI CCGG 2 cut(s) 270, 773
BslI CCNNNNNNNGG 2 cut(s) 118, 646
BsnI GGCC 4 cut(s) 201, 210, 601, 893
Bsp1286I GDGCHC 1 cut(s) 638
Bsp143I GATC 4 cut(s) 6, 186, 336, 708
Bsp19I CCATGG 2 cut(s) 403, 801
BspACI CCGC 5 cut(s) 98, 105, 257, 458, 461
BspANI GGCC 4 cut(s) 201, 210, 601, 893
BspCNI CTCAG 1 cut(s) 209
BspLI GGNNCC 5 cut(s) 72, 102, 637, 771, 790
BspPI GGATC 3 cut(s) 14, 181, 716
BspT107I GGYRCC 1 cut(s) 635
BsrDI GCAATG 1 cut(s) 558
BsrI ACTGG 1 cut(s) 384
BssECI CCNNGG 3 cut(s) 117, 403, 801
BssMI GATC 4 cut(s) 6, 186, 336, 708
BssSI CACGAG 1 cut(s) 204
BssT1I CCWWGG 3 cut(s) 117, 403, 801
Bst2BI CACGAG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 603
Bst4CI ACNGT 2 cut(s) 56, 371
BstAPI GCANNNNNTGC 1 cut(s) 625
BstBAI YACGTR 1 cut(s) 281
BstC8I GCNNGC 3 cut(s) 109, 259, 456
BstDEI CTNAG 2 cut(s) 196, 536
BstDSI CCRYGG 2 cut(s) 403, 801
BstF5I GGATG 2 cut(s) 86, 757
BstKTI GATC 4 cut(s) 9, 189, 339, 711
BstMBI GATC 4 cut(s) 6, 186, 336, 708
BstMCI CGRYCG 1 cut(s) 510
BstMWI GCNNNNNNNGC 4 cut(s) 104, 207, 216, 625
BstNI CCWGG 1 cut(s) 603
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 2 cut(s) 601, 771
BstSFI CTRYAG 1 cut(s) 703
BstSLI GKGCMC 1 cut(s) 638
BstV1I GCAGC 3 cut(s) 559, 738, 890
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
Bsu36I CCTNAGG 1 cut(s) 196
BsuRI GGCC 4 cut(s) 201, 210, 601, 893
BtgI CCRYGG 2 cut(s) 403, 801
BtsCI GGATG 2 cut(s) 86, 757
BtsIMutI CAGTG 3 cut(s) 259, 367, 391
Cac8I GCNNGC 3 cut(s) 109, 259, 456
Cfr13I GGNCC 6 cut(s) 70, 100, 200, 209, 769, 798
Csp6I GTAC 4 cut(s) 15, 31, 265, 301
CviAII CATG 9 cut(s) 94, 404, 518, 548, 566, 577, 616, 802, 904
CviQI GTAC 4 cut(s) 15, 31, 265, 301
DdeI CTNAG 2 cut(s) 196, 536
DpnI GATC 4 cut(s) 8, 188, 338, 710
DpnII GATC 4 cut(s) 6, 186, 336, 708
EciI GGCGGA 2 cut(s) 113, 476
Eco130I CCWWGG 3 cut(s) 117, 403, 801
Eco147I AGGCCT 1 cut(s) 601
Eco47I GGWCC 4 cut(s) 70, 100, 769, 798
Eco72I CACGTG 1 cut(s) 281
Eco81I CCTNAGG 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 769
EcoRI GAATTC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 601
EcoT14I CCWWGG 3 cut(s) 117, 403, 801
EcoT22I ATGCAT 1 cut(s) 519
ErhI CCWWGG 3 cut(s) 117, 403, 801
FaeI CATG 9 cut(s) 97, 407, 521, 551, 569, 580, 619, 805, 907
FatI CATG 9 cut(s) 93, 403, 517, 547, 565, 576, 615, 801, 903
FauI CCCGC 2 cut(s) 112, 250
FblI GTMKAC 1 cut(s) 735
Fnu4HI GCNGC 4 cut(s) 459, 573, 727, 879
FokI GGATG 2 cut(s) 73, 764
Fsp4HI GCNGC 4 cut(s) 459, 573, 727, 879
FspBI CTAG 1 cut(s) 675
GluI GCNGC 4 cut(s) 459, 573, 727, 879
GsaI CCCAGC 1 cut(s) 242
HaeIII GGCC 4 cut(s) 201, 210, 601, 893
HapII CCGG 2 cut(s) 270, 773
Hin1II CATG 9 cut(s) 97, 407, 521, 551, 569, 580, 619, 805, 907
HinfI GANTC 1 cut(s) 544
HpaII CCGG 2 cut(s) 270, 773
Hpy166II GTNNAC 2 cut(s) 267, 736
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 2 cut(s) 267, 736
HpyAV CCTTC 4 cut(s) 100, 460, 868, 908
HpyCH4III ACNGT 2 cut(s) 56, 371
HpyCH4IV ACGT 4 cut(s) 280, 449, 714, 837
HpyCH4V TGCA 7 cut(s) 454, 517, 551, 565, 619, 628, 691
HpyF10VI GCNNNNNNNGC 4 cut(s) 104, 207, 216, 625
HpyF3I CTNAG 2 cut(s) 196, 536
HpySE526I ACGT 4 cut(s) 280, 449, 714, 837
Hsp92II CATG 9 cut(s) 97, 407, 521, 551, 569, 580, 619, 805, 907
Kzo9I GATC 4 cut(s) 6, 186, 336, 708
LmnI GCTCC 2 cut(s) 569, 829
Lsp1109I GCAGC 3 cut(s) 559, 738, 890
LweI GCATC 1 cut(s) 637
MaeI CTAG 1 cut(s) 675
MaeII ACGT 4 cut(s) 280, 449, 714, 837
MaeIII GTNAC 2 cut(s) 412, 432
MalI GATC 4 cut(s) 8, 188, 338, 710
MboI GATC 4 cut(s) 6, 186, 336, 708
MboII GAAGA 2 cut(s) 492, 826
MfeI CAATTG 1 cut(s) 793
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 638
MluCI AATT 8 cut(s) 63, 157, 428, 529, 621, 793, 862, 899
MlyI GAGTC 1 cut(s) 553
MmeI TCCRAC 2 cut(s) 250, 825
MnlI CCTC 7 cut(s) 91, 153, 200, 205, 356, 591, 712
Mph1103I ATGCAT 1 cut(s) 519
MseI TTAA 1 cut(s) 861
MspI CCGG 2 cut(s) 270, 773
MspR9I CCNGG 2 cut(s) 603, 773
MunI CAATTG 1 cut(s) 793
MvaI CCWGG 1 cut(s) 603
MwoI GCNNNNNNNGC 4 cut(s) 104, 207, 216, 625
NciI CCSGG 1 cut(s) 773
NcoI CCATGG 2 cut(s) 403, 801
NdeII GATC 4 cut(s) 6, 186, 336, 708
NlaIII CATG 9 cut(s) 97, 407, 521, 551, 569, 580, 619, 805, 907
NlaIV GGNNCC 5 cut(s) 72, 102, 637, 771, 790
NmuCI GTSAC 1 cut(s) 412
NsiI ATGCAT 1 cut(s) 519
NspI RCATGY 1 cut(s) 521
PceI AGGCCT 1 cut(s) 601
PflMI CCANNNNNTGG 1 cut(s) 646
PkrI GCNGC 4 cut(s) 460, 574, 728, 880
PleI GAGTC 1 cut(s) 552
PmaCI CACGTG 1 cut(s) 281
PmlI CACGTG 1 cut(s) 281
PpsI GAGTC 1 cut(s) 552
Ppu21I YACGTR 1 cut(s) 281
PpuMI RGGWCCY 1 cut(s) 769
PsiI TTATAA 2 cut(s) 326, 528
Psp1406I AACGTT 1 cut(s) 449
Psp5II RGGWCCY 1 cut(s) 769
Psp6I CCWGG 1 cut(s) 601
PspCI CACGTG 1 cut(s) 281
PspFI CCCAGC 1 cut(s) 238
PspGI CCWGG 1 cut(s) 601
PspN4I GGNNCC 5 cut(s) 72, 102, 637, 771, 790
PspPI GGNCC 6 cut(s) 70, 100, 200, 209, 769, 798
PspPPI RGGWCCY 1 cut(s) 769
PsuI RGATCY 1 cut(s) 6
RsaI GTAC 4 cut(s) 16, 32, 266, 302
RsaNI GTAC 4 cut(s) 15, 31, 265, 301
SaqAI TTAA 1 cut(s) 861
SatI GCNGC 4 cut(s) 459, 573, 727, 879
Sau3AI GATC 4 cut(s) 6, 186, 336, 708
Sau96I GGNCC 6 cut(s) 70, 100, 200, 209, 769, 798
SchI GAGTC 1 cut(s) 553
ScrFI CCNGG 2 cut(s) 603, 773
SduI GDGCHC 1 cut(s) 638
SfaNI GCATC 1 cut(s) 637
SfcI CTRYAG 1 cut(s) 703
SfiI GGCCNNNNNGGCC 1 cut(s) 207
SinI GGWCC 4 cut(s) 70, 100, 769, 798
SmlI CTYRAG 1 cut(s) 824
SmoI CTYRAG 1 cut(s) 824
Sse9I AATT 8 cut(s) 63, 157, 428, 529, 621, 793, 862, 899
SseBI AGGCCT 1 cut(s) 601
SsiI CCGC 5 cut(s) 98, 105, 257, 458, 461
SspMI CTAG 1 cut(s) 675
StuI AGGCCT 1 cut(s) 601
StyD4I CCNGG 2 cut(s) 601, 771
StyI CCWWGG 3 cut(s) 117, 403, 801
TaaI ACNGT 2 cut(s) 56, 371
TaiI ACGT 4 cut(s) 283, 452, 717, 840
TaqI TCGA 3 cut(s) 145, 153, 348
TaqII GACCGA 1 cut(s) 524
TasI AATT 8 cut(s) 63, 157, 428, 529, 621, 793, 862, 899
TatI WGTACW 1 cut(s) 264
TauI GCSGC 1 cut(s) 461
Tru1I TTAA 1 cut(s) 861
Tru9I TTAA 1 cut(s) 861
TscAI CASTG 3 cut(s) 259, 374, 391
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 3 cut(s) 572, 726, 878
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 6 cut(s) 37, 82, 604, 678, 827, 892
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 3 cut(s) 259, 374, 391
Van91I CCANNNNNTGG 1 cut(s) 646
VpaK11BI GGWCC 4 cut(s) 70, 100, 769, 798
XapI RAATTY 2 cut(s) 157, 899
XceI RCATGY 1 cut(s) 521
XcmI CCANNNNNNNNNTGG 3 cut(s) 91, 799, 901
XmiI GTMKAC 1 cut(s) 735
XspI CTAG 1 cut(s) 675
Zsp2I ATGCAT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.