Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038333.1

Orthogroup ID

OG0001444

Physical Location & Seq

Genomic Coordinates Forward (+)

2578 .. 2989

Gene Structure 412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038333.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 412 bp

atggactcatcccaacttgcatccctggaagtggaaagaatccgaccttaccctcgaaaattcgaagatttcataatggcccagatcaaggacctcacactagctgttggcccacgaagcccaccgtgtaaagtccaacacaatgctccggccctagtattcgccgccggtggatacaccggaaacttttggcatgacttcaatgatggatttatcccgctctttatcaccgccaacacactcttcccagatcaagacttcgtgatcgtggtttcccaagctccaaagtggtgggtttataagtatgccgatttactacgcatattcaccgagcaccctattattaccatgggaaatgatgccaccacccattgttttccttctgccaatctaggccttatatcacatggtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

DUF563

Protein Analysis

137

Amino Acids

15.4

Weight (kDa)

5.88

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G03360 AT2G03360 AT2G03370 AT2G03370
fragaria_vesca	FvH4_4g30540 FvH4_4g30550 FvH4_4g30551
malus_domestica	MD00G1177600.v1.1 MD00G1177700.v1.1 MD13G1066400.v1.1 MD16G1065500.v1.1 MD16G1065600.v1.1
prunus_persica	Prupe.1G281500_v2.0.a1 Prupe.1G281500_v2.0.a1 Prupe.1G281500_v2.0.a1 Prupe.1G281600_v2.0.a1
pyrus_communis	pycom16g05720
rosa_chinensis	RchiOBHm_Chr4g0438911 RchiOBHm_Chr4g0438921 RchiOBHm_Chr4g0438931
rosa_laevigata	RLG00000006317 RLG00000006318 RLG00000006320
rosa_multiflora	Rmu_co8325543.1_g000001 Rmu_sc0002505.1_g000027 Rmu_sc0005887.1_g000002 Rmu_sc0005887.1_g000004 Rmu_sc0032189.1_g000001 Rmu_sc0038333.1_g000002
rosa_roxburghii	Rroxscaffold_5G00379930 Rroxscaffold_5G00379940 Rroxscaffold_5G00379950
rosa_rugosa	Rorug04G0314300 Rorug04G0314300 Rorug04G0314400
rosa_samantha	Rh4AG365000 Rh4AG365100 Rh4BG376100 Rh4BG376200 Rh4BG376300 Rh4CG390200 Rh4CG390300 Rh4CG390400 Rh4DG370800 Rh4DG370900 Rh4DG371000
rosa_wichuraiana	Rw0G007320 Rw0G007330 Rw0G007340 Rw0G016870 Rw0G016880 Rw0G016890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
AccBSI	CCGCTC	1 cut(s)	220
AciI	CCGC	3 cut(s)	165, 218, 231
AcsI	RAATTY	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	31, 88
AgsI	TTSAA	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	2 cut(s)	104, 281
AluI	AGCT	2 cut(s)	104, 281
Alw21I	GWGCWC	1 cut(s)	336
AoxI	GGCC	4 cut(s)	78, 109, 150, 394
ApoI	RAATTY	1 cut(s)	59
AspS9I	GGNCC	4 cut(s)	79, 91, 110, 151
AsuHPI	GGTGA	2 cut(s)	220, 319
AsuII	TTCGAA	1 cut(s)	63
AvaII	GGWCC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	336
BccI	CCATC	1 cut(s)	200
BciT130I	CCWGG	1 cut(s)	26
BciVI	GTATCC	1 cut(s)	167
BfaI	CTAG	3 cut(s)	101, 155, 392
BfuI	GTATCC	1 cut(s)	167
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	4 cut(s)	79, 91, 110, 151
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	2 cut(s)	29, 349
Bpu14I	TTCGAA	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	24, 348
BsaWI	WCCGGW	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 88
Bse118I	RCCGGY	1 cut(s)	167
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	24, 348
BseGI	GGATG	2 cut(s)	8, 20
BseLI	CCNNNNNNNGG	2 cut(s)	31, 88
BshFI	GGCC	4 cut(s)	80, 111, 152, 396
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	3 cut(s)	149, 168, 180
BslI	CCNNNNNNNGG	2 cut(s)	31, 88
BsnI	GGCC	4 cut(s)	80, 111, 152, 396
Bsp119I	TTCGAA	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	3 cut(s)	84, 250, 264
Bsp19I	CCATGG	1 cut(s)	348
BspACI	CCGC	3 cut(s)	165, 218, 231
BspANI	GGCC	4 cut(s)	80, 111, 152, 396
BspT104I	TTCGAA	1 cut(s)	63
BsrBI	CCGCTC	1 cut(s)	220
BsrFI	RCCGGY	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	24, 348
BssMI	GATC	3 cut(s)	84, 250, 264
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	126
Bst6I	CTCTTC	1 cut(s)	248
BstBI	TTCGAA	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	348
BstF5I	GGATG	2 cut(s)	8, 20
BstKTI	GATC	3 cut(s)	87, 253, 267
BstMBI	GATC	3 cut(s)	84, 250, 264
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstXI	CCANNNNNNTGG	1 cut(s)	291
BsuI	GTATCC	1 cut(s)	167
BsuRI	GGCC	4 cut(s)	80, 111, 152, 396
BtgI	CCRYGG	1 cut(s)	348
BtsCI	GGATG	2 cut(s)	8, 20
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	4 cut(s)	79, 91, 110, 151
CviAII	CATG	3 cut(s)	194, 349, 407
CviJI	RGCY	7 cut(s)	80, 104, 111, 120, 152, 281, 396
CviKI_1	RGCY	7 cut(s)	80, 104, 111, 120, 152, 281, 396
DpnI	GATC	3 cut(s)	86, 252, 266
DpnII	GATC	3 cut(s)	84, 250, 264
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	348
Eco147I	AGGCCT	1 cut(s)	396
Eco47I	GGWCC	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	3 cut(s)	197, 352, 410
FaiI	YATR	8 cut(s)	74, 195, 300, 306, 323, 350, 401, 408
FatI	CATG	3 cut(s)	193, 348, 406
FauI	CCCGC	1 cut(s)	225
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	1 cut(s)	7
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	3 cut(s)	101, 155, 392
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	4 cut(s)	80, 111, 152, 396
HapII	CCGG	3 cut(s)	149, 168, 180
Hin1II	CATG	3 cut(s)	197, 352, 410
HinfI	GANTC	2 cut(s)	5, 39
HpaII	CCGG	3 cut(s)	149, 168, 180
HphI	GGTGA	2 cut(s)	220, 319
Hpy188I	TCNGA	1 cut(s)	44
Hpy188III	TCNNGA	2 cut(s)	254, 262
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4V	TGCA	1 cut(s)	20
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
Hsp92II	CATG	3 cut(s)	197, 352, 410
Kzo9I	GATC	3 cut(s)	84, 250, 264
LmnI	GCTCC	2 cut(s)	151, 286
LpnPI	CCDG	7 cut(s)	11, 38, 95, 162, 181, 193, 261
LweI	GCATC	2 cut(s)	29, 349
MaeI	CTAG	3 cut(s)	101, 155, 392
MalI	GATC	3 cut(s)	86, 252, 266
MbiI	CCGCTC	1 cut(s)	220
MboI	GATC	3 cut(s)	84, 250, 264
MboII	GAAGA	2 cut(s)	77, 235
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	1 cut(s)	59
MmeI	TCCRAC	2 cut(s)	67, 160
MnlI	CCTC	2 cut(s)	63, 104
MspI	CCGG	3 cut(s)	149, 168, 180
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	117
NcoI	CCATGG	1 cut(s)	348
NdeII	GATC	3 cut(s)	84, 250, 264
NlaIII	CATG	3 cut(s)	197, 352, 410
NspV	TTCGAA	1 cut(s)	63
PceI	AGGCCT	1 cut(s)	396
PfeI	GAWTC	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	166
PpuMI	RGGWCCY	1 cut(s)	91
PsiI	TTATAA	1 cut(s)	300
Psp5II	RGGWCCY	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspPI	GGNCC	4 cut(s)	79, 91, 110, 151
PspPPI	RGGWCCY	1 cut(s)	91
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	3 cut(s)	84, 250, 264
Sau96I	GGNCC	4 cut(s)	79, 91, 110, 151
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	336
SetI	ASST	4 cut(s)	49, 96, 106, 283
SfaNI	GCATC	2 cut(s)	29, 349
SfuI	TTCGAA	1 cut(s)	63
SgrAI	CRCCGGYG	1 cut(s)	167
SinI	GGWCC	1 cut(s)	91
Sse9I	AATT	1 cut(s)	59
SseBI	AGGCCT	1 cut(s)	396
SsiI	CCGC	3 cut(s)	165, 218, 231
SspMI	CTAG	3 cut(s)	101, 155, 392
StuI	AGGCCT	1 cut(s)	396
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	55, 63
TasI	AATT	1 cut(s)	59
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	39
TspDTI	ATGAA	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	91
XapI	RAATTY	1 cut(s)	59
XspI	CTAG	3 cut(s)	101, 155, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.