Rmu_co8325543.1_g000001

Protein of unknown function (DUF563)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8325543.1
OG0001444
Physical Location & Seq
Forward (+)
18 .. 746
729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8325543.1_g000001.1.cds

Sequence Viewer

Length: 729 bp
atgggaaatgatgccaccacccattgttttccttctgccaatctaggccttatatcacatggtttcatgactataaaccaaacactaatacctcgtgcaaaaacgtttctgcattttcgtgggctcctagacaacgcatataagcgaaggtcccaacctcaaattctctcctctgagcagacaaaaccccggccacgccttgttttggcgagccggaatcatgcaactggacgcaggatcgttaaccaggttcaagtagttcgtttggtaaagaaagtggggtttgatgtgattgtgtttgagcctaaggccaataactcattgcatgagtcttatgcgttacttaattcaagccatgcttttgttggggtacatggcgctgcacttacacactcattgttcctccggcccggttcagtgttcgtacaggtggtgccgattggggtggactgggcggcgaatgcgtgtttcgggagagtggcgaaggggctgaggttggagtattttgagtacaagatcggagtgaaagagagtagcttggtggacaagtatggtaatgatagtttggtggtaaaagatccatttggtcttcagaaaatggggtggcgtgctgaggttatggacatttacttgaaggagcagaatgtgaagctggatttggttaggttcaaggggtatttgaagcaagcgtttaagaaggctaagaaatttatggacaacaatggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
DUF563

Protein Analysis

242

Amino Acids

27.19

Weight (kDa)

10.03

Isoelectric Point (pI)

29.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 433
AciI CCGC 1 cut(s) 455
AclI AACGTT 1 cut(s) 104
AclWI GGATC 2 cut(s) 245, 572
AcoI YGGCCR 1 cut(s) 191
AcsI RAATTY 2 cut(s) 162, 707
AcuI CTGAAG 1 cut(s) 575
AfaI GTAC 3 cut(s) 372, 426, 512
AfiI CCNNNNNNNGG 1 cut(s) 205
AgsI TTSAA 5 cut(s) 254, 351, 634, 670, 682
AjnI CCWGG 1 cut(s) 246
AjuI GAANNNNNNNTTGG 4 cut(s) 147, 179, 641, 673
AluBI AGCT 2 cut(s) 537, 652
AluI AGCT 2 cut(s) 537, 652
AlwI GGATC 2 cut(s) 245, 572
AoxI GGCC 4 cut(s) 46, 191, 309, 407
ApeKI GCWGC 1 cut(s) 380
ApoI RAATTY 2 cut(s) 162, 707
AspLEI GCGC 1 cut(s) 380
AspS9I GGNCC 2 cut(s) 150, 408
AsuC2I CCSGG 2 cut(s) 190, 411
AvaII GGWCC 1 cut(s) 150
AxyI CCTNAGG 1 cut(s) 306
BanI GGYRCC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 126
BauI CACGAG 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 581
BbvCI CCTCAGC 2 cut(s) 491, 612
BbvI GCAGC 1 cut(s) 367
BciT130I CCWGG 1 cut(s) 248
BcnI CCSGG 2 cut(s) 190, 411
BfaI CTAG 2 cut(s) 44, 128
BfoI RGCGCY 1 cut(s) 381
BisI GCNGC 2 cut(s) 381, 456
BlsI GCNGC 2 cut(s) 382, 457
Bme1390I CCNGG 3 cut(s) 190, 248, 411
Bme18I GGWCC 1 cut(s) 150
BmgT120I GGNCC 2 cut(s) 150, 408
BmiI GGNNCC 3 cut(s) 125, 152, 435
BmrFI CCNGG 3 cut(s) 190, 248, 411
BmrI ACTGGG 1 cut(s) 460
BmuI ACTGGG 1 cut(s) 460
BpiI GAAGAC 1 cut(s) 581
Bpu10I CCTNAGC 2 cut(s) 491, 612
BpuMI CCSGG 2 cut(s) 190, 411
BsaJI CCNNGG 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse1I ACTGG 2 cut(s) 232, 455
Bse21I CCTNAGG 1 cut(s) 306
Bse3DI GCAATG 1 cut(s) 320
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 3 cut(s) 165, 482, 603
BseNI ACTGG 2 cut(s) 232, 455
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 367
BsgI GTGCAG 1 cut(s) 366
BshFI GGCC 4 cut(s) 48, 193, 311, 409
BshNI GGYRCC 1 cut(s) 433
BsiSI CCGG 4 cut(s) 190, 214, 406, 411
BslFI GGGAC 1 cut(s) 136
BslI CCNNNNNNNGG 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 136
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 4 cut(s) 48, 193, 311, 409
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 3 cut(s) 237, 516, 577
BspACI CCGC 1 cut(s) 455
BspANI GGCC 4 cut(s) 48, 193, 311, 409
BspCNI CTCAG 3 cut(s) 166, 483, 604
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 3 cut(s) 125, 152, 435
BspPI GGATC 2 cut(s) 245, 572
BspT107I GGYRCC 1 cut(s) 433
BsrDI GCAATG 1 cut(s) 320
BsrI ACTGG 2 cut(s) 232, 455
BssECI CCNNGG 1 cut(s) 188
BssMI GATC 3 cut(s) 237, 516, 577
BssSI CACGAG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 248
BstC8I GCNNGC 3 cut(s) 211, 609, 687
BstDEI CTNAG 5 cut(s) 174, 306, 491, 612, 702
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 1 cut(s) 380
BstKTI GATC 3 cut(s) 240, 519, 580
BstMBI GATC 3 cut(s) 237, 516, 577
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstNI CCWGG 1 cut(s) 248
BstSCI CCNGG 3 cut(s) 188, 246, 409
BstV1I GCAGC 1 cut(s) 367
BstV2I GAAGAC 1 cut(s) 581
BstX2I RGATCY 1 cut(s) 577
BstYI RGATCY 1 cut(s) 577
Bsu36I CCTNAGG 1 cut(s) 306
BsuRI GGCC 4 cut(s) 48, 193, 311, 409
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 3 cut(s) 211, 609, 687
CciI TCATGA 1 cut(s) 66
CfoI GCGC 1 cut(s) 380
Cfr13I GGNCC 2 cut(s) 150, 408
CseI GACGC 1 cut(s) 240
CsiI ACCWGGT 1 cut(s) 246
Csp6I GTAC 3 cut(s) 371, 425, 511
CviAII CATG 6 cut(s) 59, 67, 221, 326, 356, 374
CviQI GTAC 3 cut(s) 371, 425, 511
DdeI CTNAG 5 cut(s) 174, 306, 491, 612, 702
DpnI GATC 3 cut(s) 239, 518, 579
DpnII GATC 3 cut(s) 237, 516, 577
EaeI YGGCCR 1 cut(s) 191
Eco147I AGGCCT 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 575
Eco81I CCTNAGG 1 cut(s) 306
EcoO109I RGGNCCY 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 6 cut(s) 62, 70, 224, 329, 359, 377
FalI AAGNNNNNCTT 2 cut(s) 343, 375
FaqI GGGAC 1 cut(s) 136
FatI CATG 6 cut(s) 58, 66, 220, 325, 355, 373
Fnu4HI GCNGC 2 cut(s) 381, 456
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 2 cut(s) 381, 456
FspBI CTAG 2 cut(s) 44, 128
GlaI GCGC 1 cut(s) 379
GluI GCNGC 2 cut(s) 381, 456
HaeII RGCGCY 1 cut(s) 381
HaeIII GGCC 4 cut(s) 48, 193, 311, 409
HapII CCGG 4 cut(s) 190, 214, 406, 411
HgaI GACGC 1 cut(s) 240
HhaI GCGC 1 cut(s) 380
Hin1II CATG 6 cut(s) 62, 70, 224, 329, 359, 377
Hin6I GCGC 1 cut(s) 378
HinP1I GCGC 1 cut(s) 378
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 2 cut(s) 217, 329
HpaI GTTAAC 1 cut(s) 244
HpaII CCGG 4 cut(s) 190, 214, 406, 411
Hpy166II GTNNAC 3 cut(s) 244, 448, 544
Hpy188I TCNGA 3 cut(s) 175, 521, 594
Hpy188III TCNNGA 2 cut(s) 67, 472
Hpy8I GTNNAC 3 cut(s) 244, 448, 544
HpyAV CCTTC 5 cut(s) 42, 141, 478, 628, 691
HpyCH4IV ACGT 1 cut(s) 104
HpyCH4V TGCA 5 cut(s) 98, 112, 224, 325, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
HpyF3I CTNAG 5 cut(s) 174, 306, 491, 612, 702
HpySE526I ACGT 1 cut(s) 104
Hsp92II CATG 6 cut(s) 62, 70, 224, 329, 359, 377
HspAI GCGC 1 cut(s) 378
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 3 cut(s) 237, 516, 577
LmnI GCTCC 2 cut(s) 129, 637
Lsp1109I GCAGC 1 cut(s) 367
MabI ACCWGGT 1 cut(s) 246
MaeI CTAG 2 cut(s) 44, 128
MaeII ACGT 1 cut(s) 104
MaeIII GTNAC 1 cut(s) 339
MalI GATC 3 cut(s) 239, 518, 579
MboI GATC 3 cut(s) 237, 516, 577
MboII GAAGA 1 cut(s) 581
MflI RGATCY 1 cut(s) 577
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 3 cut(s) 162, 346, 707
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 1 cut(s) 477
MnlI CCTC 6 cut(s) 102, 168, 181, 413, 486, 607
MseI TTAA 3 cut(s) 243, 345, 693
MslI CAYNNNNRTG 1 cut(s) 117
MspI CCGG 4 cut(s) 190, 214, 406, 411
MspR9I CCNGG 3 cut(s) 190, 248, 411
Mva1269I GAATGC 1 cut(s) 466
MvaI CCWGG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 461
NciI CCSGG 2 cut(s) 190, 411
NdeII GATC 3 cut(s) 237, 516, 577
NlaIII CATG 6 cut(s) 62, 70, 224, 329, 359, 377
NlaIV GGNNCC 3 cut(s) 125, 152, 435
PagI TCATGA 1 cut(s) 66
PceI AGGCCT 1 cut(s) 48
PctI GAATGC 1 cut(s) 466
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 2 cut(s) 382, 457
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PpuMI RGGWCCY 1 cut(s) 150
Psp1406I AACGTT 1 cut(s) 104
Psp5II RGGWCCY 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 3 cut(s) 125, 152, 435
PspPI GGNCC 2 cut(s) 150, 408
PspPPI RGGWCCY 1 cut(s) 150
PsuI RGATCY 1 cut(s) 577
RsaI GTAC 3 cut(s) 372, 426, 512
RsaNI GTAC 3 cut(s) 371, 425, 511
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 3 cut(s) 243, 345, 693
SatI GCNGC 2 cut(s) 381, 456
Sau3AI GATC 3 cut(s) 237, 516, 577
Sau96I GGNCC 2 cut(s) 150, 408
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 3 cut(s) 190, 248, 411
SduI GDGCHC 1 cut(s) 126
SexAI ACCWGGT 1 cut(s) 246
SinI GGWCC 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 117
Sse9I AATT 3 cut(s) 162, 346, 707
SseBI AGGCCT 1 cut(s) 48
SsiI CCGC 1 cut(s) 455
SspMI CTAG 2 cut(s) 44, 128
StuI AGGCCT 1 cut(s) 48
StyD4I CCNGG 3 cut(s) 188, 246, 409
TaiI ACGT 1 cut(s) 107
TasI AATT 3 cut(s) 162, 346, 707
TatI WGTACW 1 cut(s) 510
TauI GCSGC 1 cut(s) 458
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 3 cut(s) 243, 345, 693
Tru9I TTAA 3 cut(s) 243, 345, 693
TscAI CASTG 1 cut(s) 423
TseI GCWGC 1 cut(s) 380
TspDTI ATGAA 1 cut(s) 55
TspRI CASTG 1 cut(s) 423
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 2 cut(s) 162, 707
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XspI CTAG 2 cut(s) 44, 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.