Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003309

Physical Location & Seq

Genomic Coordinates Reverse (-)

16295031 .. 16295891

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1058800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGATTTCTGGGGTTAAGTTGAGTAGCGTTAGTTTGGACCATGCGTTTGTCACTTTTTTTTACCGCAGAGCTGGGGTCATTGAGTTGAGAATGATCAAAAAATGTATTGAACATACAGTGTTTTCAAATATTCTCCCAGGATGTGGTTTCACCGGCCGGTTAGAGCTGATGGCTGGTTACTGTATGTGGTATATGGTGAGTCCCATTGCCTACGACACGCATGGATTTGTTTTGGGCCAAATGTTTTACAGAAACGGAGAGCTTGTTGTATCATTGACTCAAGAGTCCCTAAATAGGCCAATTAGACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006082 GO:0006139 GO:0006163 GO:0006629 GO:0006631 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009117 GO:0009150 GO:0009259 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010559 GO:0010561 GO:0010605 GO:0016042 GO:0016043 GO:0016054 GO:0016289 GO:0016290 GO:0016559 GO:0016787 GO:0016788 GO:0016790 GO:0019222 GO:0019637 GO:0019693 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031907 GO:0031974 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045223 GO:0045225 GO:0046395 GO:0046483 GO:0047617 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051186 GO:0051246 GO:0051248 GO:0052815 GO:0055086 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072521 GO:0080090 GO:1901135 GO:1901360 GO:1901564 GO:1901575 GO:1903018 GO:1903019 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01100 ko01110 map00062 map01040 map01100 map01110

Pfam Domains

Protein Families

4HBT_3 Acyl_CoA_thio cNMP_binding

Protein Analysis

104

Amino Acids

11.71

Weight (kDa)

8.93

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01710 AT4G00520 AT4G00520 AT4G00520
fragaria_vesca	FvH4_7g14192 FvH4_7g14192
malus_domestica	MD01G1058300.v1.1 MD01G1058500.v1.1 MD01G1058600.v1.1 MD01G1058800.v1.1 MD01G1059000.v1.1 MD01G1059100.v1.1
prunus_persica	Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1
pyrus_communis	pycom01g08790 pycom01g08800 pycom01g08810
rosa_chinensis	RchiOBHm_Chr1g0355121 RchiOBHm_Chr2g0172691 RchiOBHm_Chr5g0059521
rosa_laevigata	RLG00000034509
rosa_multiflora	Rmu_sc0007904.1_g000004
rosa_rugosa	Rorug04G0051700
rosa_samantha	Rh1BG226900 Rh1DG254500 Rh2AG328100 Rh2CG617900 Rh2DG665600 Rh3BG328600 Rh3CG366400 Rh4BG185900 Rh5BG399500 Rh5CG423500 Rh6DG388900
rosa_wichuraiana	Rw3G029180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	283
AccB7I	CCANNNNNTGG	1 cut(s)	143
AciI	CCGC	1 cut(s)	64
AcoI	YGGCCR	1 cut(s)	154
AfiI	CCNNNNNNNGG	2 cut(s)	143, 294
AgsI	TTSAA	2 cut(s)	110, 126
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	3 cut(s)	71, 166, 262
AluI	AGCT	3 cut(s)	71, 166, 262
AoxI	GGCC	3 cut(s)	154, 235, 296
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
AspS9I	GGNCC	2 cut(s)	37, 235
AsuHPI	GGTGA	2 cut(s)	142, 208
AvaII	GGWCC	1 cut(s)	37
BccI	CCATC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	138
BclI	TGATCA	1 cut(s)	93
Bme1390I	CCNGG	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	37, 235
BmrFI	CCNGG	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	136
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 294
Bse118I	RCCGGY	2 cut(s)	152, 156
Bse3DI	GCAATG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	146
BseLI	CCNNNNNNNGG	2 cut(s)	143, 294
BseMI	GCAATG	1 cut(s)	204
BseX3I	CGGCCG	1 cut(s)	154
BseYI	CCCAGC	1 cut(s)	71
Bsh1285I	CGRYCG	1 cut(s)	157
BshFI	GGCC	3 cut(s)	156, 237, 298
BsiEI	CGRYCG	1 cut(s)	157
BsiSI	CCGG	2 cut(s)	153, 157
BslFI	GGGAC	2 cut(s)	186, 271
BslI	CCNNNNNNNGG	2 cut(s)	143, 294
BsmFI	GGGAC	2 cut(s)	186, 271
BsnI	GGCC	3 cut(s)	156, 237, 298
Bsp143I	GATC	1 cut(s)	93
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	3 cut(s)	156, 237, 298
BsrDI	GCAATG	1 cut(s)	204
BsrFI	RCCGGY	2 cut(s)	152, 156
BssAI	RCCGGY	2 cut(s)	152, 156
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	2 cut(s)	118, 182
BstF5I	GGATG	1 cut(s)	146
BstKTI	GATC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	93
BstMCI	CGRYCG	1 cut(s)	157
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	136
BstZI	CGGCCG	1 cut(s)	154
BsuRI	GGCC	3 cut(s)	156, 237, 298
BtsCI	GGATG	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	123
Cfr10I	RCCGGY	2 cut(s)	152, 156
Cfr13I	GGNCC	2 cut(s)	37, 235
CviAII	CATG	2 cut(s)	41, 221
CviJI	RGCY	7 cut(s)	71, 156, 166, 173, 237, 262, 298
CviKI_1	RGCY	7 cut(s)	71, 156, 166, 173, 237, 262, 298
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
DrdI	GACNNNNNNGTC	1 cut(s)	283
DseDI	GACNNNNNNGTC	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	154
EagI	CGGCCG	1 cut(s)	154
EclXI	CGGCCG	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	37
Eco52I	CGGCCG	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	136
FaeI	CATG	2 cut(s)	44, 224
FaiI	YATR	6 cut(s)	42, 114, 185, 192, 194, 222
FaqI	GGGAC	2 cut(s)	186, 271
FatI	CATG	2 cut(s)	40, 220
FbaI	TGATCA	1 cut(s)	93
FokI	GGATG	1 cut(s)	153
GsaI	CCCAGC	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	156, 237, 298
HapII	CCGG	2 cut(s)	153, 157
Hin1II	CATG	2 cut(s)	44, 224
HinfI	GANTC	3 cut(s)	199, 277, 284
HpaII	CCGG	2 cut(s)	153, 157
HphI	GGTGA	2 cut(s)	142, 208
Hpy188III	TCNNGA	1 cut(s)	281
HpyCH4III	ACNGT	2 cut(s)	118, 182
Hsp92II	CATG	2 cut(s)	44, 224
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	1 cut(s)	93
LpnPI	CCDG	6 cut(s)	57, 123, 150, 159, 166, 170
MaeIII	GTNAC	2 cut(s)	49, 176
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MluCI	AATT	1 cut(s)	300
MlyI	GAGTC	3 cut(s)	208, 271, 293
MseI	TTAA	1 cut(s)	15
MspI	CCGG	2 cut(s)	153, 157
MspR9I	CCNGG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	2 cut(s)	44, 224
NmuCI	GTSAC	1 cut(s)	49
PflMI	CCANNNNNTGG	1 cut(s)	143
PleI	GAGTC	3 cut(s)	207, 271, 292
PpsI	GAGTC	3 cut(s)	207, 271, 292
Psp6I	CCWGG	1 cut(s)	136
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	136
PspPI	GGNCC	2 cut(s)	37, 235
SaqAI	TTAA	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	2 cut(s)	37, 235
SchI	GAGTC	3 cut(s)	208, 271, 293
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	3 cut(s)	73, 168, 264
SinI	GGWCC	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
Sse9I	AATT	1 cut(s)	300
SsiI	CCGC	1 cut(s)	64
SspI	AATATT	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	136
TaaI	ACNGT	2 cut(s)	118, 182
TasI	AATT	1 cut(s)	300
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	123
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	123
Van91I	CCANNNNNTGG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.