Rh5BG399500

UPF0586 protein C9orf41 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003309
Physical Location & Seq
Reverse (-)
64835066 .. 64851200
16135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG399500.1

Sequence Viewer

Length: 645 bp
ATGCACAATTATCTAAAGCCAACAATCCACCCCAATGAGGATCTTGTGATTGAGTTTCTGGGCTGCGTTCCTCTGCTTCAGCGCCTACCCAGCTCCTCGCTCAAGAAAATCGCCCAGCTCGTAATTCCAAAGCACTACGATAAAGGAGAGTATGTTGTTCGTGAAGGTGAGGATGGGATTTGGGTTTACTTCATTTGGGAAGGAGAGGAAGGCGTCCCTGTCTTCCAATGGTGGTCTGCTGCAGCTCACGTGACGAGCTCGAAGCCGTCGGCTCTACCGTCACAACCACCCCCTATATCTCTTTATCCCCTCTGTTGTCAAACTGCTGGGGAGTGGACAATATATCCGTGGATCCACAGAAATTATATTCATCCCGCTAGTGCAGGGATTACTGAAGGCTTTTCTATGTGTGGCGGTGACTTTGTTGAGGTTTATAATGATCCAAGCCAAGATATGTCTATTGAACTGAGTTTGGAGGACGTGAAGAGGGTTGCTTTACATTATGGATTTCATATAGAGAAGGAAAAGACCATTGAGACAACCTACACTACAAATCCCAGATCAATGATGCAATTCCCATCTTTGGAGAATGTCACAAGACATACTGGAAACTTATGGAAAATAATGGTTGAGAATGATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00340 map00340
Pfam Domains
Protein Families
N2227

Protein Analysis

214

Amino Acids

24.38

Weight (kDa)

5.31

Isoelectric Point (pI)

51.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CARME PF07942 147 - 191 7.9e-10 Carnosine N-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
AciI CCGC 2 cut(s) 375, 414
AclWI GGATC 4 cut(s) 48, 346, 359, 434
AcuI CTGAAG 2 cut(s) 62, 414
AcvI CACGTG 1 cut(s) 250
AcyI GRCGYC 1 cut(s) 213
AfiI CCNNNNNNNGG 2 cut(s) 37, 583
AgsI TTSAA 1 cut(s) 464
AjiI CACGTC 1 cut(s) 481
AluBI AGCT 4 cut(s) 93, 118, 245, 258
AluI AGCT 4 cut(s) 93, 118, 245, 258
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 530
AlwI GGATC 4 cut(s) 48, 346, 359, 434
ApeKI GCWGC 3 cut(s) 63, 239, 242
AspLEI GCGC 1 cut(s) 84
AsuHPI GGTGA 2 cut(s) 179, 428
BamHI GGATCC 1 cut(s) 351
BanII GRGCYC 1 cut(s) 260
BbrPI CACGTG 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 260
BbvI GCAGC 3 cut(s) 50, 226, 254
BccI CCATC 3 cut(s) 167, 586, 632
BceAI ACGGC 1 cut(s) 250
BcoDI GTCTC 1 cut(s) 530
BfaI CTAG 1 cut(s) 378
BfmI CTRYAG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 3 cut(s) 64, 240, 243
BlsI GCNGC 3 cut(s) 65, 241, 244
BmgBI CACGTC 1 cut(s) 481
BmiI GGNNCC 1 cut(s) 353
BmsI GCATC 1 cut(s) 558
BpiI GAAGAC 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 86
BsaAI YACGTR 1 cut(s) 250
BsaHI GRCGYC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 347
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 583
Bse1I ACTGG 1 cut(s) 610
BseDI CCNNGG 1 cut(s) 347
BseGI GGATG 2 cut(s) 178, 370
BseLI CCNNNNNNNGG 2 cut(s) 37, 583
BseMII CTCAG 1 cut(s) 458
BseNI ACTGG 1 cut(s) 610
BseRI GAGGAG 1 cut(s) 85
BseXI GCAGC 3 cut(s) 50, 226, 254
BseYI CCCAGC 3 cut(s) 89, 114, 326
BsgI GTGCAG 1 cut(s) 402
BsiHKAI GWGCWC 1 cut(s) 260
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 2 cut(s) 37, 583
BsmAI GTCTC 1 cut(s) 530
BsmFI GGGAC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 4 cut(s) 40, 351, 439, 560
BspACI CCGC 2 cut(s) 375, 414
BspCNI CTCAG 1 cut(s) 459
BspLI GGNNCC 1 cut(s) 353
BspMAI CTGCAG 1 cut(s) 244
BspPI GGATC 4 cut(s) 48, 346, 359, 434
BsrI ACTGG 1 cut(s) 610
BssECI CCNNGG 1 cut(s) 347
BssMI GATC 4 cut(s) 40, 351, 439, 560
BssNI GRCGYC 1 cut(s) 213
Bst4CI ACNGT 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 479
BstACI GRCGYC 1 cut(s) 213
BstBAI YACGTR 1 cut(s) 250
BstDEI CTNAG 1 cut(s) 467
BstDSI CCRYGG 1 cut(s) 347
BstF5I GGATG 2 cut(s) 178, 370
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstKTI GATC 4 cut(s) 43, 354, 442, 563
BstMAI GTCTC 1 cut(s) 530
BstMBI GATC 4 cut(s) 40, 351, 439, 560
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 3 cut(s) 50, 226, 254
BstV2I GAAGAC 1 cut(s) 214
BstX2I RGATCY 2 cut(s) 40, 351
BstYI RGATCY 2 cut(s) 40, 351
BtgI CCRYGG 1 cut(s) 347
BtrI CACGTC 1 cut(s) 481
BtsCI GGATG 2 cut(s) 178, 370
CfoI GCGC 1 cut(s) 84
CseI GACGC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 467
DpnI GATC 4 cut(s) 42, 353, 441, 562
DpnII GATC 4 cut(s) 40, 351, 439, 560
Eam1104I CTCTTC 1 cut(s) 479
EarI CTCTTC 1 cut(s) 479
Ecl136II GAGCTC 1 cut(s) 258
Eco24I GRGCYC 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 258
Eco57I CTGAAG 2 cut(s) 62, 414
Eco72I CACGTG 1 cut(s) 250
EcoICRI GAGCTC 1 cut(s) 258
EcoT38I GRGCYC 1 cut(s) 260
FaqI GGGAC 1 cut(s) 200
FauI CCCGC 1 cut(s) 382
Fnu4HI GCNGC 3 cut(s) 64, 240, 243
FokI GGATG 2 cut(s) 185, 357
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 3 cut(s) 64, 240, 243
FspBI CTAG 1 cut(s) 378
GlaI GCGC 1 cut(s) 83
GluI GCNGC 3 cut(s) 64, 240, 243
GsaI CCCAGC 3 cut(s) 93, 118, 330
HaeII RGCGCY 1 cut(s) 85
HgaI GACGC 1 cut(s) 202
HhaI GCGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 213
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HphI GGTGA 2 cut(s) 179, 428
Hpy166II GTNNAC 2 cut(s) 187, 336
Hpy188III TCNNGA 2 cut(s) 103, 161
Hpy8I GTNNAC 2 cut(s) 187, 336
Hpy99I CGWCG 1 cut(s) 271
HpyAV CCTTC 5 cut(s) 158, 194, 203, 389, 514
HpyCH4III ACNGT 1 cut(s) 279
HpyCH4IV ACGT 2 cut(s) 249, 480
HpyCH4V TGCA 4 cut(s) 4, 242, 383, 571
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 1 cut(s) 467
HpySE526I ACGT 2 cut(s) 249, 480
Hsp92I GRCGYC 1 cut(s) 213
HspAI GCGC 1 cut(s) 82
Kzo9I GATC 4 cut(s) 40, 351, 439, 560
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 8 cut(s) 44, 103, 128, 231, 312, 369, 571, 591
Lsp1109I GCAGC 3 cut(s) 50, 226, 254
LweI GCATC 1 cut(s) 558
MaeI CTAG 1 cut(s) 378
MaeII ACGT 2 cut(s) 249, 480
MaeIII GTNAC 4 cut(s) 250, 279, 416, 592
MalI GATC 4 cut(s) 42, 353, 441, 562
MboI GATC 4 cut(s) 40, 351, 439, 560
MboII GAAGA 2 cut(s) 214, 496
MflI RGATCY 2 cut(s) 40, 351
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 4 cut(s) 7, 123, 361, 572
MnlI CCTC 9 cut(s) 31, 81, 106, 163, 199, 320, 421, 469, 480
MslI CAYNNNNRTG 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeII GATC 4 cut(s) 40, 351, 439, 560
NlaIV GGNNCC 1 cut(s) 353
NmuCI GTSAC 4 cut(s) 250, 279, 416, 592
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 275
PkrI GCNGC 3 cut(s) 65, 241, 244
PmaCI CACGTG 1 cut(s) 250
PmlI CACGTG 1 cut(s) 250
Ppu21I YACGTR 1 cut(s) 250
PsiI TTATAA 1 cut(s) 435
Psp124BI GAGCTC 1 cut(s) 260
PspCI CACGTG 1 cut(s) 250
PspFI CCCAGC 3 cut(s) 89, 114, 326
PspN4I GGNNCC 1 cut(s) 353
PstI CTGCAG 1 cut(s) 244
PsuI RGATCY 2 cut(s) 40, 351
RseI CAYNNNNRTG 1 cut(s) 33
SacI GAGCTC 1 cut(s) 260
SatI GCNGC 3 cut(s) 64, 240, 243
Sau3AI GATC 4 cut(s) 40, 351, 439, 560
SduI GDGCHC 1 cut(s) 260
SetI ASST 9 cut(s) 95, 120, 169, 247, 252, 260, 432, 483, 545
SfaNI GCATC 1 cut(s) 558
SfcI CTRYAG 1 cut(s) 240
SmiMI CAYNNNNRTG 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
Sse9I AATT 4 cut(s) 7, 123, 361, 572
SsiI CCGC 2 cut(s) 375, 414
SspMI CTAG 1 cut(s) 378
SstI GAGCTC 1 cut(s) 260
TaaI ACNGT 1 cut(s) 279
TaiI ACGT 2 cut(s) 252, 483
TaqI TCGA 1 cut(s) 260
TasI AATT 4 cut(s) 7, 123, 361, 572
TseFI GTSAC 4 cut(s) 250, 279, 416, 592
TseI GCWGC 3 cut(s) 63, 239, 242
Tsp45I GTSAC 4 cut(s) 250, 279, 416, 592
TspDTI ATGAA 3 cut(s) 181, 359, 500
TspGWI ACGGA 1 cut(s) 336
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.