Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003309

Physical Location & Seq

Genomic Coordinates Forward (+)

46094489 .. 46094850

Gene Structure 362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG366400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGACTCCGAATCAGTGATTGAGTTTCTGGGCTGCGTTCCTCTGCTTCAACGCCTACCCAGCTCCTCCCTAAAGAAAATCGCCCAACTCGTAATTCCAAAGCACTACGATAAAGGAGAGTATGTTGTTCATGAAGGTGAGGATGGGATTGGGGTTTACTTCATTTGGGAGTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006082 GO:0006139 GO:0006163 GO:0006629 GO:0006631 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009117 GO:0009150 GO:0009259 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010559 GO:0010561 GO:0010605 GO:0016042 GO:0016043 GO:0016054 GO:0016289 GO:0016290 GO:0016559 GO:0016787 GO:0016788 GO:0016790 GO:0019222 GO:0019637 GO:0019693 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031907 GO:0031974 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045223 GO:0045225 GO:0046395 GO:0046483 GO:0047617 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051186 GO:0051246 GO:0051248 GO:0052815 GO:0055086 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072521 GO:0080090 GO:1901135 GO:1901360 GO:1901564 GO:1901575 GO:1903018 GO:1903019 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01100 ko01110 map00062 map01040 map01100 map01110

Pfam Domains

Protein Families

4HBT_3 Acyl_CoA_thio cNMP_binding

Protein Analysis

59

Amino Acids

6.72

Weight (kDa)

4.86

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01710 AT4G00520 AT4G00520 AT4G00520
fragaria_vesca	FvH4_7g14192 FvH4_7g14192
malus_domestica	MD01G1058300.v1.1 MD01G1058500.v1.1 MD01G1058600.v1.1 MD01G1058800.v1.1 MD01G1059000.v1.1 MD01G1059100.v1.1
prunus_persica	Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1
pyrus_communis	pycom01g08790 pycom01g08800 pycom01g08810
rosa_chinensis	RchiOBHm_Chr1g0355121 RchiOBHm_Chr2g0172691 RchiOBHm_Chr5g0059521
rosa_laevigata	RLG00000034509
rosa_multiflora	Rmu_sc0007904.1_g000004
rosa_rugosa	Rorug04G0051700
rosa_samantha	Rh1BG226900 Rh1DG254500 Rh2AG328100 Rh2CG617900 Rh2DG665600 Rh3BG328600 Rh3CG366400 Rh4BG185900 Rh5BG399500 Rh5CG423500 Rh6DG388900
rosa_wichuraiana	Rw3G029180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	50
AjuI	GAANNNNNNNTTGG	2 cut(s)	78, 110
AluBI	AGCT	1 cut(s)	63
AluI	AGCT	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	20
BccI	CCATC	1 cut(s)	137
BisI	GCNGC	1 cut(s)	34
BlsI	GCNGC	1 cut(s)	35
BsaXI	ACNNNNNCTCC	3 cut(s)	108, 138, 161
BseGI	GGATG	1 cut(s)	148
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	20
BseYI	CCCAGC	1 cut(s)	59
BspHI	TCATGA	1 cut(s)	130
BstF5I	GGATG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	21
CciI	TCATGA	1 cut(s)	130
CviAII	CATG	1 cut(s)	131
CviJI	RGCY	2 cut(s)	33, 63
CviKI_1	RGCY	2 cut(s)	33, 63
FaeI	CATG	1 cut(s)	134
FaiI	YATR	2 cut(s)	123, 132
FatI	CATG	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	34
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	34
GluI	GCNGC	1 cut(s)	34
GsaI	CCCAGC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	134
HinfI	GANTC	2 cut(s)	5, 11
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
Hsp92II	CATG	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	68
LpnPI	CCDG	2 cut(s)	14, 73
Lsp1109I	GCAGC	1 cut(s)	20
MluCI	AATT	1 cut(s)	93
MnlI	CCTC	3 cut(s)	51, 76, 133
MslI	CAYNNNNRTG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	60
NlaIII	CATG	1 cut(s)	134
PagI	TCATGA	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	11
PkrI	GCNGC	1 cut(s)	35
PspFI	CCCAGC	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	135
SatI	GCNGC	1 cut(s)	34
SetI	ASST	2 cut(s)	65, 139
SgeI	CNNG	4 cut(s)	41, 72, 101, 143
SmiMI	CAYNNNNRTG	1 cut(s)	135
Sse9I	AATT	1 cut(s)	93
TasI	AATT	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	11
TscAI	CASTG	1 cut(s)	21
TseI	GCWGC	1 cut(s)	33
TspDTI	ATGAA	3 cut(s)	119, 147, 151
TspRI	CASTG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.