Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003309

Physical Location & Seq

Genomic Coordinates Reverse (-)

16297876 .. 16299807

Gene Structure 1932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1059100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGATGATGAAAGGAAATCGACCCGAGTTAAAATTGAAACGATATGATTATTTTGGTTATGGTTTTGCATCAATTGAACATCAGGCCGATGTGATTGCTTTATCCAAGCTGATTTGCTTGGTGCTAGCCCATGAGAATTGCACTCTGCTGCAGCCAAAATCAATCTGGAATGCTGATAAAGCTCAAAAGACATGCTCTCTTGTTGAGAATATATTGCATTTGGATCCAATTGAAGTAAACATATTTCAAGGGATTACTTTGCTGGATACGCCACAATTCGGACAGGTTTTTGGAAGGCAGTTAGTTGGACAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006082 GO:0006139 GO:0006163 GO:0006629 GO:0006631 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009117 GO:0009150 GO:0009259 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010559 GO:0010561 GO:0010605 GO:0016042 GO:0016043 GO:0016054 GO:0016289 GO:0016290 GO:0016559 GO:0016787 GO:0016788 GO:0016790 GO:0019222 GO:0019637 GO:0019693 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031907 GO:0031974 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045223 GO:0045225 GO:0046395 GO:0046483 GO:0047617 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051186 GO:0051246 GO:0051248 GO:0052815 GO:0055086 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072521 GO:0080090 GO:1901135 GO:1901360 GO:1901564 GO:1901575 GO:1903018 GO:1903019 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01100 ko01110 map00062 map01040 map01100 map01110

Pfam Domains

Protein Families

4HBT_3 Acyl_CoA_thio cNMP_binding

Protein Analysis

106

Amino Acids

11.85

Weight (kDa)

6.81

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01710 AT4G00520 AT4G00520 AT4G00520
fragaria_vesca	FvH4_7g14192 FvH4_7g14192
malus_domestica	MD01G1058300.v1.1 MD01G1058500.v1.1 MD01G1058600.v1.1 MD01G1058800.v1.1 MD01G1059000.v1.1 MD01G1059100.v1.1
prunus_persica	Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1
pyrus_communis	pycom01g08790 pycom01g08800 pycom01g08810
rosa_chinensis	RchiOBHm_Chr1g0355121 RchiOBHm_Chr2g0172691 RchiOBHm_Chr5g0059521
rosa_laevigata	RLG00000034509
rosa_multiflora	Rmu_sc0007904.1_g000004
rosa_rugosa	Rorug04G0051700
rosa_samantha	Rh1BG226900 Rh1DG254500 Rh2AG328100 Rh2CG617900 Rh2DG665600 Rh3BG328600 Rh3CG366400 Rh4BG185900 Rh5BG399500 Rh5CG423500 Rh6DG388900
rosa_wichuraiana	Rw3G029180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	218, 231
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	4 cut(s)	37, 77, 233, 248
AluBI	AGCT	2 cut(s)	109, 182
AluI	AGCT	2 cut(s)	109, 182
AlwI	GGATC	2 cut(s)	218, 231
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	2 cut(s)	148, 151
AsuNHI	GCTAGC	1 cut(s)	124
AvaI	CYCGRG	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	135, 163
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciVI	GTATCC	1 cut(s)	259
BfaI	CTAG	1 cut(s)	125
BfmI	CTRYAG	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	259
BisI	GCNGC	2 cut(s)	149, 152
BlsI	GCNGC	2 cut(s)	150, 153
BmeT110I	CYCGRG	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	225
BmsI	GCATC	1 cut(s)	77
BmtI	GCTAGC	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseXI	GCAGC	2 cut(s)	135, 163
BshFI	GGCC	1 cut(s)	86
BsiHKCI	CYCGRG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	86
BsoBI	CYCGRG	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	223
BspANI	GGCC	1 cut(s)	86
BspLI	GGNNCC	1 cut(s)	225
BspMAI	CTGCAG	1 cut(s)	153
BspOI	GCTAGC	1 cut(s)	128
BspPI	GGATC	2 cut(s)	218, 231
BssMI	GATC	1 cut(s)	223
BstC8I	GCNNGC	1 cut(s)	126
BstKTI	GATC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 268
BstNSI	RCATGY	1 cut(s)	195
BstSFI	CTRYAG	1 cut(s)	149
BstV1I	GCAGC	2 cut(s)	135, 163
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuI	GTATCC	1 cut(s)	259
BsuRI	GGCC	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	126
CviAII	CATG	3 cut(s)	131, 192, 315
CviJI	RGCY	5 cut(s)	86, 109, 128, 154, 182
CviKI_1	RGCY	5 cut(s)	86, 109, 128, 154, 182
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
Eco88I	CYCGRG	1 cut(s)	23
FaeI	CATG	3 cut(s)	134, 195, 318
FaiI	YATR	7 cut(s)	45, 60, 132, 193, 212, 242, 316
FatI	CATG	3 cut(s)	130, 191, 314
Fnu4HI	GCNGC	2 cut(s)	149, 152
Fsp4HI	GCNGC	2 cut(s)	149, 152
FspBI	CTAG	1 cut(s)	125
GluI	GCNGC	2 cut(s)	149, 152
HaeIII	GGCC	1 cut(s)	86
Hin1II	CATG	3 cut(s)	134, 195, 318
Hpy166II	GTNNAC	1 cut(s)	238
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	1 cut(s)	238
HpyAV	CCTTC	1 cut(s)	288
HpyCH4V	TGCA	4 cut(s)	68, 141, 151, 217
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 268
Hsp92II	CATG	3 cut(s)	134, 195, 318
Kzo9I	GATC	1 cut(s)	223
LpnPI	CCDG	5 cut(s)	68, 151, 248, 269, 296
Lsp1109I	GCAGC	2 cut(s)	135, 163
LweI	GCATC	1 cut(s)	77
MaeI	CTAG	1 cut(s)	125
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MfeI	CAATTG	2 cut(s)	72, 228
MflI	RGATCY	1 cut(s)	223
MluCI	AATT	5 cut(s)	32, 72, 136, 228, 275
MmeI	TCCRAC	1 cut(s)	286
MseI	TTAA	1 cut(s)	29
MunI	CAATTG	2 cut(s)	72, 228
Mva1269I	GAATGC	1 cut(s)	175
MwoI	GCNNNNNNNGC	2 cut(s)	179, 268
NdeII	GATC	1 cut(s)	223
NheI	GCTAGC	1 cut(s)	124
NlaIII	CATG	3 cut(s)	134, 195, 318
NlaIV	GGNNCC	1 cut(s)	225
NspI	RCATGY	1 cut(s)	195
PctI	GAATGC	1 cut(s)	175
PkrI	GCNGC	2 cut(s)	150, 153
PspN4I	GGNNCC	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	153
PsuI	RGATCY	1 cut(s)	223
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	2 cut(s)	149, 152
Sau3AI	GATC	1 cut(s)	223
SetI	ASST	3 cut(s)	111, 184, 288
SfaNI	GCATC	1 cut(s)	77
SfcI	CTRYAG	1 cut(s)	149
Sse9I	AATT	5 cut(s)	32, 72, 136, 228, 275
SspMI	CTAG	1 cut(s)	125
TaqI	TCGA	1 cut(s)	19
TasI	AATT	5 cut(s)	32, 72, 136, 228, 275
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TseI	GCWGC	2 cut(s)	148, 151
TspDTI	ATGAA	1 cut(s)	23
XceI	RCATGY	1 cut(s)	195
XcmI	CCANNNNNNNNNTGG	1 cut(s)	162
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.