Rh3BG328600

UPF0586 protein C9orf41 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003309
Physical Location & Seq
Reverse (-)
34332900 .. 34335120
2221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG328600.1

Sequence Viewer

Length: 471 bp
ATGTTCTTGTTGCCAACGATCACCTCTACCTCTGTAACTTCACCATTCTCAACCATGGACTCCGAATCAGTGATTGAGTTTCTGGGCTGCGTTCCTCTGCTTCAGCGCCTACCCAGCTCCTCGCTCAAGAAAATCGCCCAGCTCGTAATTCCAAAGCACTACGATAAAGGAGAGTATGTTGTTCGTGAAGTTGTCAAACTGCTGGGGAGTGGACAATATATCCGTGGATCCACAGCAATTGTAATTCGCTTTCAGATGATGACCAAACTTCGTCCCGTTTCAATACCAGATATTCATCCTGCTAGTGCAGGGATTACTGAAGGCTTTTCTATGTGTGGCGGTGACTTTGTTGAGGTTTATAACGATCCAAGCCAAGTAGGTGCTTGGGATGCGGTTGTGACCTGTTTCTTTATTGATACGGCACACAACATTGTTGAATACATTGAAACCATATCAAGAATCTTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00340 map00340
Pfam Domains
Protein Families
N2227

Protein Analysis

156

Amino Acids

17.2

Weight (kDa)

5.88

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CARME PF07942 87 - 156 2.9e-23 Carnosine N-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 360
AciI CCGC 2 cut(s) 339, 392
AclWI GGATC 3 cut(s) 222, 235, 359
AcuI CTGAAG 2 cut(s) 86, 339
AgsI TTSAA 4 cut(s) 282, 437, 446, 466
AluBI AGCT 2 cut(s) 117, 142
AluI AGCT 2 cut(s) 117, 142
AlwI GGATC 3 cut(s) 222, 235, 359
ApeKI GCWGC 1 cut(s) 87
AspLEI GCGC 1 cut(s) 108
AsuHPI GGTGA 3 cut(s) 13, 33, 353
BamHI GGATCC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 74
BceAI ACGGC 1 cut(s) 435
BfaI CTAG 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 109
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 229
BmsI GCATC 1 cut(s) 379
BpuEI CTTGAG 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 294
BsaJI CCNNGG 2 cut(s) 54, 223
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bse8I GATNNNNATC 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 54, 223
BseGI GGATG 2 cut(s) 295, 394
BseJI GATNNNNATC 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 74
BseYI CCCAGC 3 cut(s) 113, 138, 202
BsgI GTGCAG 1 cut(s) 327
BslFI GGGAC 1 cut(s) 258
BsmFI GGGAC 1 cut(s) 258
Bsp143I GATC 3 cut(s) 18, 227, 364
Bsp19I CCATGG 1 cut(s) 54
BspACI CCGC 2 cut(s) 339, 392
BspLI GGNNCC 1 cut(s) 229
BspPI GGATC 3 cut(s) 222, 235, 359
BssECI CCNNGG 2 cut(s) 54, 223
BssMI GATC 3 cut(s) 18, 227, 364
BssT1I CCWWGG 1 cut(s) 54
BstDSI CCRYGG 2 cut(s) 54, 223
BstF5I GGATG 2 cut(s) 295, 394
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 3 cut(s) 21, 230, 367
BstMBI GATC 3 cut(s) 18, 227, 364
BstMWI GCNNNNNNNGC 2 cut(s) 114, 389
BstV1I GCAGC 1 cut(s) 74
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
BtgI CCRYGG 2 cut(s) 54, 223
BtsCI GGATG 2 cut(s) 295, 394
BtsIMutI CAGTG 1 cut(s) 75
CfoI GCGC 1 cut(s) 108
CspCI CAANNNNNGTGG 2 cut(s) 220, 255
CviAII CATG 1 cut(s) 55
CviJI RGCY 5 cut(s) 87, 117, 142, 324, 372
CviKI_1 RGCY 5 cut(s) 87, 117, 142, 324, 372
DpnI GATC 3 cut(s) 20, 229, 366
DpnII GATC 3 cut(s) 18, 227, 364
Eco130I CCWWGG 1 cut(s) 54
Eco57I CTGAAG 2 cut(s) 86, 339
EcoT14I CCWWGG 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 54
FaeI CATG 1 cut(s) 58
FaiI YATR 6 cut(s) 56, 177, 219, 332, 360, 452
FaqI GGGAC 1 cut(s) 258
FatI CATG 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 88
FokI GGATG 2 cut(s) 282, 401
Fsp4HI GCNGC 1 cut(s) 88
FspBI CTAG 1 cut(s) 303
GlaI GCGC 1 cut(s) 107
GluI GCNGC 1 cut(s) 88
GsaI CCCAGC 3 cut(s) 117, 142, 206
HaeII RGCGCY 1 cut(s) 109
HhaI GCGC 1 cut(s) 108
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HinfI GANTC 3 cut(s) 59, 65, 459
HphI GGTGA 3 cut(s) 13, 33, 353
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 2 cut(s) 64, 255
Hpy188III TCNNGA 4 cut(s) 127, 185, 456, 463
Hpy8I GTNNAC 1 cut(s) 212
HpyAV CCTTC 1 cut(s) 314
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 389
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 1 cut(s) 106
Kzo9I GATC 3 cut(s) 18, 227, 364
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 8 cut(s) 68, 127, 152, 188, 294, 300, 312, 415
Lsp1109I GCAGC 1 cut(s) 74
LweI GCATC 1 cut(s) 379
MaeI CTAG 1 cut(s) 303
MaeIII GTNAC 3 cut(s) 34, 341, 397
MalI GATC 3 cut(s) 20, 229, 366
MboI GATC 3 cut(s) 18, 227, 364
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 1 cut(s) 227
MluCI AATT 3 cut(s) 147, 237, 243
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 5 cut(s) 34, 40, 105, 130, 346
MunI CAATTG 1 cut(s) 237
MwoI GCNNNNNNNGC 2 cut(s) 114, 389
NcoI CCATGG 1 cut(s) 54
NdeII GATC 3 cut(s) 18, 227, 364
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 1 cut(s) 229
NmuCI GTSAC 2 cut(s) 341, 397
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PfeI GAWTC 2 cut(s) 65, 459
PkrI GCNGC 1 cut(s) 89
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PsiI TTATAA 1 cut(s) 360
PspFI CCCAGC 3 cut(s) 113, 138, 202
PspN4I GGNNCC 1 cut(s) 229
PsuI RGATCY 1 cut(s) 227
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 3 cut(s) 18, 227, 364
SchI GAGTC 1 cut(s) 53
SetI ASST 7 cut(s) 26, 32, 119, 144, 357, 382, 404
SfaNI GCATC 1 cut(s) 379
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 3 cut(s) 147, 237, 243
SsiI CCGC 2 cut(s) 339, 392
SspMI CTAG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 54
TasI AATT 3 cut(s) 147, 237, 243
TfiI GAWTC 2 cut(s) 65, 459
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 2 cut(s) 341, 397
TseI GCWGC 1 cut(s) 87
Tsp45I GTSAC 2 cut(s) 341, 397
TspDTI ATGAA 1 cut(s) 284
TspGWI ACGGA 1 cut(s) 212
TspRI CASTG 1 cut(s) 75
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.