Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003309

Physical Location & Seq

Genomic Coordinates Reverse (-)

16297321 .. 16297874

Gene Structure 554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1059000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCGTTCTAATATAGCTTATAAAGTGCAGGCATTAGCTGCAGCAACGAAAACTGTTGATTGTCTTAAACTTCTCCATAGTGTGCATGCACATTTTCTGCTTGCTGGGGATTCTAACAGTAAGTACTTTGTATATGAGCTAACATCTAAGGATAAGAATCCTAAGATAAGAGGCAATATGTCACCAATTATATATCAAGTTCACAGAATGCGTGATGGGAAGAGCTCTGCTACTCAAAGAGTTGATGCAATACAAAAGGGGATTAACATATTCACGTTACTTGCATCATTTAAAGTAACCATTTGTTTAGACACTTTACAAATGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006082 GO:0006139 GO:0006163 GO:0006629 GO:0006631 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009117 GO:0009150 GO:0009259 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010559 GO:0010561 GO:0010605 GO:0016042 GO:0016043 GO:0016054 GO:0016289 GO:0016290 GO:0016559 GO:0016787 GO:0016788 GO:0016790 GO:0019222 GO:0019637 GO:0019693 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031907 GO:0031974 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045223 GO:0045225 GO:0046395 GO:0046483 GO:0047617 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051186 GO:0051246 GO:0051248 GO:0052815 GO:0055086 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072521 GO:0080090 GO:1901135 GO:1901360 GO:1901564 GO:1901575 GO:1903018 GO:1903019 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01100 ko01110 map00062 map01040 map01100 map01110

Pfam Domains

Protein Families

4HBT_3 Acyl_CoA_thio cNMP_binding

Protein Analysis

110

Amino Acids

12.21

Weight (kDa)

9.78

Isoelectric Point (pI)

19.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01710 AT4G00520 AT4G00520 AT4G00520
fragaria_vesca	FvH4_7g14192 FvH4_7g14192
malus_domestica	MD01G1058300.v1.1 MD01G1058500.v1.1 MD01G1058600.v1.1 MD01G1058800.v1.1 MD01G1059000.v1.1 MD01G1059100.v1.1
prunus_persica	Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1
pyrus_communis	pycom01g08790 pycom01g08800 pycom01g08810
rosa_chinensis	RchiOBHm_Chr1g0355121 RchiOBHm_Chr2g0172691 RchiOBHm_Chr5g0059521
rosa_laevigata	RLG00000034509
rosa_multiflora	Rmu_sc0007904.1_g000004
rosa_rugosa	Rorug04G0051700
rosa_samantha	Rh1BG226900 Rh1DG254500 Rh2AG328100 Rh2CG617900 Rh2DG665600 Rh3BG328600 Rh3CG366400 Rh4BG185900 Rh5BG399500 Rh5CG423500 Rh6DG388900
rosa_wichuraiana	Rw3G029180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AfaI	GTAC	1 cut(s)	125
AluBI	AGCT	4 cut(s)	17, 38, 139, 225
AluI	AGCT	4 cut(s)	17, 38, 139, 225
Alw21I	GWGCWC	1 cut(s)	227
ApeKI	GCWGC	2 cut(s)	38, 41
AsuHPI	GGTGA	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	2 cut(s)	25, 53
BccI	CCATC	1 cut(s)	209
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	2 cut(s)	39, 42
BlsI	GCNGC	2 cut(s)	40, 43
BmcAI	AGTACT	1 cut(s)	125
BmsI	GCATC	2 cut(s)	235, 293
BsaBI	GATNNNNATC	1 cut(s)	156
Bse8I	GATNNNNATC	1 cut(s)	156
BseJI	GATNNNNATC	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	25, 53
BseYI	CCCAGC	1 cut(s)	104
BsgI	GTGCAG	1 cut(s)	47
BsiHKAI	GWGCWC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	43
BspQI	GCTCTTC	1 cut(s)	215
BssMI	GATC	1 cut(s)	324
Bst4CI	ACNGT	2 cut(s)	55, 119
Bst6I	CTCTTC	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	3 cut(s)	30, 87, 102
BstDEI	CTNAG	2 cut(s)	147, 162
BstKTI	GATC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	324
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNSI	RCATGY	1 cut(s)	89
BstSFI	CTRYAG	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	25, 53
Cac8I	GCNNGC	3 cut(s)	30, 87, 102
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	4 cut(s)	17, 38, 139, 225
CviKI_1	RGCY	4 cut(s)	17, 38, 139, 225
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	2 cut(s)	147, 162
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
DraI	TTTAAA	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Ecl136II	GAGCTC	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	227
Eco53kI	GAGCTC	1 cut(s)	225
EcoICRI	GAGCTC	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	227
FaeI	CATG	1 cut(s)	89
FatI	CATG	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	39, 42
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	39, 42
GluI	GCNGC	2 cut(s)	39, 42
GsaI	CCCAGC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	89
HinfI	GANTC	2 cut(s)	110, 157
HphI	GGTGA	1 cut(s)	174
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	329
Hpy8I	GTNNAC	1 cut(s)	202
HpyCH4III	ACNGT	2 cut(s)	55, 119
HpyCH4IV	ACGT	1 cut(s)	275
HpyCH4V	TGCA	6 cut(s)	28, 41, 85, 89, 248, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	2 cut(s)	147, 162
HpySE526I	ACGT	1 cut(s)	275
Hsp92II	CATG	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	324
LguI	GCTCTTC	1 cut(s)	215
LpnPI	CCDG	2 cut(s)	14, 90
Lsp1109I	GCAGC	2 cut(s)	25, 53
LweI	GCATC	2 cut(s)	235, 293
MaeII	ACGT	1 cut(s)	275
MaeIII	GTNAC	3 cut(s)	180, 276, 295
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MboII	GAAGA	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	1 cut(s)	186
MnlI	CCTC	1 cut(s)	164
MseI	TTAA	3 cut(s)	66, 264, 291
Mva1269I	GAATGC	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeII	GATC	1 cut(s)	324
NlaIII	CATG	1 cut(s)	89
NmuCI	GTSAC	1 cut(s)	180
NspI	RCATGY	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	89
PciSI	GCTCTTC	1 cut(s)	215
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	2 cut(s)	110, 157
PkrI	GCNGC	2 cut(s)	40, 43
PsiI	TTATAA	1 cut(s)	21
Psp124BI	GAGCTC	1 cut(s)	227
PspFI	CCCAGC	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	43
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SacI	GAGCTC	1 cut(s)	227
SapI	GCTCTTC	1 cut(s)	215
SaqAI	TTAA	3 cut(s)	66, 264, 291
SatI	GCNGC	2 cut(s)	39, 42
Sau3AI	GATC	1 cut(s)	324
ScaI	AGTACT	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	5 cut(s)	19, 40, 141, 227, 278
SfaNI	GCATC	2 cut(s)	235, 293
SfcI	CTRYAG	1 cut(s)	39
SgeI	CNNG	8 cut(s)	41, 98, 113, 117, 209, 224, 286, 293
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	1 cut(s)	186
SstI	GAGCTC	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	55, 119
TaiI	ACGT	1 cut(s)	278
TasI	AATT	1 cut(s)	186
TatI	WGTACW	1 cut(s)	123
TfiI	GAWTC	2 cut(s)	110, 157
Tru1I	TTAA	3 cut(s)	66, 264, 291
Tru9I	TTAA	3 cut(s)	66, 264, 291
TseFI	GTSAC	1 cut(s)	180
TseI	GCWGC	2 cut(s)	38, 41
Tsp45I	GTSAC	1 cut(s)	180
XceI	RCATGY	1 cut(s)	89
ZrmI	AGTACT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.