Rh5CG423500

UPF0586 protein C9orf41 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0003309
Physical Location & Seq
Reverse (-)
58541925 .. 58548184
6260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG423500.1

Sequence Viewer

Length: 669 bp
ATGTCAAGTCCTATAATCAAAAAGGTTGCAGAGGTCTTCGCCATTGAAGTTCCCTCCCTTCCCATTTCAGTGATTGAGTTTCTGGGCTGCGTTCCTCTGCTTCAGCGCCTACCCAGCTCCTCGCTCAAGAAAATCGCCCAGCTCGTAATTCCAAAGCACTACGATAAAGGAGAGTATGTTGTTCGTGAAGGTGAGGATGGGATTTGGGTTTACTTCATTTGGGAAGGAGAGGAAGGCGTCCCTGTCTTCCAATGGTGGTCTGCTGCAGCTCACGTGACGAGCTCGAAGCCGTCGGCTCTACCGTCACAACCACCCCCTATATCTCTTTATCCCCTCTGTTGTCAAACTGCTGGGGAGTGGACAATATATCCGTGGATCCACAGAAATTATATTCATCCCGCTAGTGCAGGGATTACTGAAGGCTTTTCTATGTGTGGCGGTGACTTTGTTGAGGTTTATAATGATCCAAGCCAAGATATGTCTATTGAACTGAGTTTGGAGGACGTGAAGAGGGTTGCTTTACATTATGGATTTCATATAGAGAAGGAAAAGACCATTGAGACAACCTACACTACAAATCCCAGATCAATGATGCAATTCCCATCTTTGGAGAATGTCACAAGACATACTGGAAACTTATGGAAAATAATGGTTGAGAATGATGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00340 map00340
Pfam Domains
Protein Families
N2227

Protein Analysis

222

Amino Acids

25.02

Weight (kDa)

5.24

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CARME PF07942 155 - 199 8.4e-10 Carnosine N-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 459
AciI CCGC 2 cut(s) 399, 438
AclWI GGATC 3 cut(s) 370, 383, 458
AcuI CTGAAG 2 cut(s) 86, 438
AcvI CACGTG 1 cut(s) 274
AcyI GRCGYC 1 cut(s) 237
AfiI CCNNNNNNNGG 1 cut(s) 607
AgsI TTSAA 2 cut(s) 47, 488
AjiI CACGTC 1 cut(s) 505
AluBI AGCT 4 cut(s) 117, 142, 269, 282
AluI AGCT 4 cut(s) 117, 142, 269, 282
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 554
AlwI GGATC 3 cut(s) 370, 383, 458
ApeKI GCWGC 3 cut(s) 87, 263, 266
AspLEI GCGC 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 203, 452
BamHI GGATCC 1 cut(s) 375
BanII GRGCYC 1 cut(s) 284
BbrPI CACGTG 1 cut(s) 274
BbsI GAAGAC 2 cut(s) 28, 238
Bbv12I GWGCWC 1 cut(s) 284
BbvI GCAGC 3 cut(s) 74, 250, 278
BccI CCATC 3 cut(s) 191, 610, 656
BceAI ACGGC 1 cut(s) 274
BcoDI GTCTC 1 cut(s) 554
BfaI CTAG 1 cut(s) 402
BfmI CTRYAG 1 cut(s) 264
BfoI RGCGCY 1 cut(s) 109
BisI GCNGC 3 cut(s) 88, 264, 267
BlsI GCNGC 3 cut(s) 89, 265, 268
BmgBI CACGTC 1 cut(s) 505
BmiI GGNNCC 1 cut(s) 377
BmsI GCATC 1 cut(s) 582
BpiI GAAGAC 2 cut(s) 28, 238
BpuEI CTTGAG 1 cut(s) 110
BsaAI YACGTR 1 cut(s) 274
BsaHI GRCGYC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 371
BsaXI ACNNNNNCTCC 2 cut(s) 162, 192
Bsc4I CCNNNNNNNGG 1 cut(s) 607
Bse1I ACTGG 1 cut(s) 634
BseDI CCNNGG 1 cut(s) 371
BseGI GGATG 2 cut(s) 202, 394
BseLI CCNNNNNNNGG 1 cut(s) 607
BseMII CTCAG 1 cut(s) 482
BseNI ACTGG 1 cut(s) 634
BseRI GAGGAG 1 cut(s) 109
BseXI GCAGC 3 cut(s) 74, 250, 278
BseYI CCCAGC 3 cut(s) 113, 138, 350
BsgI GTGCAG 1 cut(s) 426
BsiHKAI GWGCWC 1 cut(s) 284
BslFI GGGAC 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 607
BsmAI GTCTC 1 cut(s) 554
BsmFI GGGAC 1 cut(s) 224
Bsp1286I GDGCHC 1 cut(s) 284
Bsp143I GATC 3 cut(s) 375, 463, 584
BspACI CCGC 2 cut(s) 399, 438
BspCNI CTCAG 1 cut(s) 483
BspLI GGNNCC 1 cut(s) 377
BspMAI CTGCAG 1 cut(s) 268
BspPI GGATC 3 cut(s) 370, 383, 458
BsrI ACTGG 1 cut(s) 634
BssECI CCNNGG 1 cut(s) 371
BssMI GATC 3 cut(s) 375, 463, 584
BssNI GRCGYC 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 303
Bst6I CTCTTC 1 cut(s) 503
BstACI GRCGYC 1 cut(s) 237
BstBAI YACGTR 1 cut(s) 274
BstDEI CTNAG 1 cut(s) 491
BstDSI CCRYGG 1 cut(s) 371
BstF5I GGATG 2 cut(s) 202, 394
BstH2I RGCGCY 1 cut(s) 109
BstHHI GCGC 1 cut(s) 108
BstKTI GATC 3 cut(s) 378, 466, 587
BstMAI GTCTC 1 cut(s) 554
BstMBI GATC 3 cut(s) 375, 463, 584
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstSFI CTRYAG 1 cut(s) 264
BstV1I GCAGC 3 cut(s) 74, 250, 278
BstV2I GAAGAC 2 cut(s) 28, 238
BstX2I RGATCY 1 cut(s) 375
BstYI RGATCY 1 cut(s) 375
BtgI CCRYGG 1 cut(s) 371
BtrI CACGTC 1 cut(s) 505
BtsCI GGATG 2 cut(s) 202, 394
BtsIMutI CAGTG 1 cut(s) 75
CfoI GCGC 1 cut(s) 108
CseI GACGC 1 cut(s) 226
CviJI RGCY 9 cut(s) 87, 117, 142, 269, 282, 289, 296, 423, 471
CviKI_1 RGCY 9 cut(s) 87, 117, 142, 269, 282, 289, 296, 423, 471
DdeI CTNAG 1 cut(s) 491
DpnI GATC 3 cut(s) 377, 465, 586
DpnII GATC 3 cut(s) 375, 463, 584
Eam1104I CTCTTC 1 cut(s) 503
EarI CTCTTC 1 cut(s) 503
Ecl136II GAGCTC 1 cut(s) 282
Eco24I GRGCYC 1 cut(s) 284
Eco53kI GAGCTC 1 cut(s) 282
Eco57I CTGAAG 2 cut(s) 86, 438
Eco72I CACGTG 1 cut(s) 274
EcoICRI GAGCTC 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 284
FaqI GGGAC 1 cut(s) 224
FauI CCCGC 1 cut(s) 406
Fnu4HI GCNGC 3 cut(s) 88, 264, 267
FokI GGATG 2 cut(s) 209, 381
FriOI GRGCYC 1 cut(s) 284
Fsp4HI GCNGC 3 cut(s) 88, 264, 267
FspBI CTAG 1 cut(s) 402
GlaI GCGC 1 cut(s) 107
GluI GCNGC 3 cut(s) 88, 264, 267
GsaI CCCAGC 3 cut(s) 117, 142, 354
HaeII RGCGCY 1 cut(s) 109
HgaI GACGC 1 cut(s) 226
HhaI GCGC 1 cut(s) 108
Hin1I GRCGYC 1 cut(s) 237
Hin6I GCGC 1 cut(s) 106
HinP1I GCGC 1 cut(s) 106
HphI GGTGA 2 cut(s) 203, 452
Hpy166II GTNNAC 2 cut(s) 211, 360
Hpy188III TCNNGA 2 cut(s) 127, 185
Hpy8I GTNNAC 2 cut(s) 211, 360
Hpy99I CGWCG 1 cut(s) 295
HpyAV CCTTC 6 cut(s) 68, 182, 218, 227, 413, 538
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4IV ACGT 2 cut(s) 273, 504
HpyCH4V TGCA 4 cut(s) 29, 266, 407, 595
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 1 cut(s) 491
HpySE526I ACGT 2 cut(s) 273, 504
Hsp92I GRCGYC 1 cut(s) 237
HspAI GCGC 1 cut(s) 106
Kzo9I GATC 3 cut(s) 375, 463, 584
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 8 cut(s) 68, 127, 152, 255, 336, 393, 595, 615
Lsp1109I GCAGC 3 cut(s) 74, 250, 278
LweI GCATC 1 cut(s) 582
MaeI CTAG 1 cut(s) 402
MaeII ACGT 2 cut(s) 273, 504
MaeIII GTNAC 4 cut(s) 274, 303, 440, 616
MalI GATC 3 cut(s) 377, 465, 586
MboI GATC 3 cut(s) 375, 463, 584
MboII GAAGA 3 cut(s) 28, 238, 520
MflI RGATCY 1 cut(s) 375
MhlI GDGCHC 1 cut(s) 284
MluCI AATT 3 cut(s) 147, 385, 596
MslI CAYNNNNRTG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 114
NdeII GATC 3 cut(s) 375, 463, 584
NlaIV GGNNCC 1 cut(s) 377
NmuCI GTSAC 4 cut(s) 274, 303, 440, 616
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 299
PkrI GCNGC 3 cut(s) 89, 265, 268
PmaCI CACGTG 1 cut(s) 274
PmlI CACGTG 1 cut(s) 274
Ppu21I YACGTR 1 cut(s) 274
PsiI TTATAA 1 cut(s) 459
Psp124BI GAGCTC 1 cut(s) 284
PspCI CACGTG 1 cut(s) 274
PspFI CCCAGC 3 cut(s) 113, 138, 350
PspN4I GGNNCC 1 cut(s) 377
PstI CTGCAG 1 cut(s) 268
PsuI RGATCY 1 cut(s) 375
RseI CAYNNNNRTG 1 cut(s) 68
SacI GAGCTC 1 cut(s) 284
SatI GCNGC 3 cut(s) 88, 264, 267
Sau3AI GATC 3 cut(s) 375, 463, 584
SduI GDGCHC 1 cut(s) 284
SfaNI GCATC 1 cut(s) 582
SfcI CTRYAG 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 68
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 3 cut(s) 147, 385, 596
SsiI CCGC 2 cut(s) 399, 438
SspMI CTAG 1 cut(s) 402
SstI GAGCTC 1 cut(s) 284
TaaI ACNGT 1 cut(s) 303
TaiI ACGT 2 cut(s) 276, 507
TaqI TCGA 1 cut(s) 284
TasI AATT 3 cut(s) 147, 385, 596
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 4 cut(s) 274, 303, 440, 616
TseI GCWGC 3 cut(s) 87, 263, 266
Tsp45I GTSAC 4 cut(s) 274, 303, 440, 616
TspDTI ATGAA 3 cut(s) 205, 383, 524
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 1 cut(s) 75
XspI CTAG 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.