Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003309

Physical Location & Seq

Genomic Coordinates Reverse (-)

64474728 .. 64478529

Gene Structure 3802 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33612

Sequence Viewer

CDS Protein Promoter (2k)

Length: 141 bp

ATGATGACCAAACTTCGTCCCGTTTCAATACCAGATATTCATCCCGCTAGTGCAGGGATTACTGAAGGCTTTTCTATGTGTGGCGGTGACTTTGTTGAGGTTTATAATGATCCAAGCCAAGTAGGAACATATATGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00340 map00340

Pfam Domains

Protein Families

N2227

Protein Analysis

46

Amino Acids

4.96

Weight (kDa)

4.43

Isoelectric Point (pI)

37.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CARME	PF07942	4 - 38	2.4e-07	Carnosine N-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01710 AT4G00520 AT4G00520 AT4G00520
fragaria_vesca	FvH4_7g14192 FvH4_7g14192
malus_domestica	MD01G1058300.v1.1 MD01G1058500.v1.1 MD01G1058600.v1.1 MD01G1058800.v1.1 MD01G1059000.v1.1 MD01G1059100.v1.1
prunus_persica	Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1
pyrus_communis	pycom01g08790 pycom01g08800 pycom01g08810
rosa_chinensis	RchiOBHm_Chr1g0355121 RchiOBHm_Chr2g0172691 RchiOBHm_Chr5g0059521
rosa_laevigata	RLG00000034509
rosa_multiflora	Rmu_sc0007904.1_g000004
rosa_rugosa	Rorug04G0051700
rosa_samantha	Rh1BG226900 Rh1DG254500 Rh2AG328100 Rh2CG617900 Rh2DG665600 Rh3BG328600 Rh3CG366400 Rh4BG185900 Rh5BG399500 Rh5CG423500 Rh6DG388900
rosa_wichuraiana	Rw3G029180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
AciI	CCGC	2 cut(s)	45, 84
AclWI	GGATC	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	84
AgsI	TTSAA	1 cut(s)	27
AlwI	GGATC	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	98
BfaI	CTAG	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	39
Bse8I	GATNNNNATC	1 cut(s)	39
BseGI	GGATG	1 cut(s)	40
BseJI	GATNNNNATC	1 cut(s)	39
BsgI	GTGCAG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	3
BsmFI	GGGAC	1 cut(s)	3
Bsp143I	GATC	1 cut(s)	109
BspACI	CCGC	2 cut(s)	45, 84
BspPI	GGATC	1 cut(s)	104
BssMI	GATC	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	40
BstKTI	GATC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	40
CviJI	RGCY	2 cut(s)	69, 117
CviKI_1	RGCY	2 cut(s)	69, 117
DpnI	GATC	1 cut(s)	111
DpnII	GATC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	84
FaiI	YATR	5 cut(s)	77, 105, 130, 132, 134
FaqI	GGGAC	1 cut(s)	3
FauI	CCCGC	1 cut(s)	52
FokI	GGATG	1 cut(s)	27
FspBI	CTAG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	59
HpyCH4V	TGCA	1 cut(s)	53
Kzo9I	GATC	1 cut(s)	109
LpnPI	CCDG	2 cut(s)	39, 45
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	1 cut(s)	111
MboI	GATC	1 cut(s)	109
MnlI	CCTC	1 cut(s)	91
NdeII	GATC	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	86
PsiI	TTATAA	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	109
SetI	ASST	1 cut(s)	102
SgeI	CNNG	7 cut(s)	32, 44, 56, 60, 66, 126, 131
SsiI	CCGC	2 cut(s)	45, 84
SspMI	CTAG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	29
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.