Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007904.1

Orthogroup ID

OG0003309

Physical Location & Seq

Genomic Coordinates Forward (+)

8261 .. 10128

Gene Structure 1868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007904.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atgttcatgttgccaacgatcacctctacctctgtaacttcaccattctcaaccatggactccgaatcagtgattgagtttctgggctgcgttcctctgcttcagcgcctacccagctcctcgctcaagaaaattgcccagctcgtaattccaaagcactacgataaaggagagtatgttgtttgtgaaggtgaggatgggattggggtttacttcatttgggacggagaggttagtttttgtgaggggtcaataacgccacttctatctcgccgtcgacagactccagttcaaggtggtgtccctgtcttccaatggtggtctgctgcagctcaaggtgggggtcagtggttgctagggtttgaaggtcagaatgcctccaaaccagctgcgaaagtgaagggtggtgattcgatggcaaccaattcggtgggtacaaatgttggcactcttgctaatgaggatggggcgcatgcttcactttcccaggggagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006082 GO:0006139 GO:0006163 GO:0006629 GO:0006631 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009117 GO:0009150 GO:0009259 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010559 GO:0010561 GO:0010605 GO:0016042 GO:0016043 GO:0016054 GO:0016289 GO:0016290 GO:0016559 GO:0016787 GO:0016788 GO:0016790 GO:0019222 GO:0019637 GO:0019693 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031907 GO:0031974 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045223 GO:0045225 GO:0046395 GO:0046483 GO:0047617 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051186 GO:0051246 GO:0051248 GO:0052815 GO:0055086 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072521 GO:0080090 GO:1901135 GO:1901360 GO:1901564 GO:1901575 GO:1903018 GO:1903019 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01100 ko01110 map00062 map01040 map01100 map01110

Pfam Domains

Protein Families

4HBT_3 Acyl_CoA_thio cNMP_binding

Protein Analysis

165

Amino Acids

17.49

Weight (kDa)

5.08

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01710 AT4G00520 AT4G00520 AT4G00520
fragaria_vesca	FvH4_7g14192 FvH4_7g14192
malus_domestica	MD01G1058300.v1.1 MD01G1058500.v1.1 MD01G1058600.v1.1 MD01G1058800.v1.1 MD01G1059000.v1.1 MD01G1059100.v1.1
prunus_persica	Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1
pyrus_communis	pycom01g08790 pycom01g08800 pycom01g08810
rosa_chinensis	RchiOBHm_Chr1g0355121 RchiOBHm_Chr2g0172691 RchiOBHm_Chr5g0059521
rosa_laevigata	RLG00000034509
rosa_multiflora	Rmu_sc0007904.1_g000004
rosa_rugosa	Rorug04G0051700
rosa_samantha	Rh1BG226900 Rh1DG254500 Rh2AG328100 Rh2CG617900 Rh2DG665600 Rh3BG328600 Rh3CG366400 Rh4BG185900 Rh5BG399500 Rh5CG423500 Rh6DG388900
rosa_wichuraiana	Rw3G029180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	1 cut(s)	436
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgsI	TTSAA	2 cut(s)	293, 365
AjnI	CCWGG	1 cut(s)	486
AluBI	AGCT	5 cut(s)	117, 142, 332, 389, 495
AluI	AGCT	5 cut(s)	117, 142, 332, 389, 495
ApeKI	GCWGC	4 cut(s)	87, 326, 329, 389
AspLEI	GCGC	2 cut(s)	108, 472
AsuHPI	GGTGA	4 cut(s)	13, 33, 203, 419
BaeI	ACNNNNGTAYC	2 cut(s)	426, 459
BbsI	GAAGAC	1 cut(s)	301
BbvI	GCAGC	4 cut(s)	74, 313, 341, 376
BccI	CCATC	3 cut(s)	191, 409, 458
BceAI	ACGGC	1 cut(s)	258
BcgI	CGANNNNNNTGC	2 cut(s)	408, 442
BciT130I	CCWGG	1 cut(s)	488
BfaI	CTAG	2 cut(s)	356, 496
BfmI	CTRYAG	1 cut(s)	327
BfoI	RGCGCY	1 cut(s)	109
BisI	GCNGC	4 cut(s)	88, 327, 330, 390
BlsI	GCNGC	4 cut(s)	89, 328, 331, 391
Bme1390I	CCNGG	1 cut(s)	488
BmrFI	CCNGG	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	301
BpmI	CTGGAG	1 cut(s)	270
BpuEI	CTTGAG	2 cut(s)	110, 318
BsaJI	CCNNGG	3 cut(s)	54, 486, 487
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse1I	ACTGG	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	488
BseDI	CCNNGG	3 cut(s)	54, 486, 487
BseGI	GGATG	2 cut(s)	202, 469
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	1 cut(s)	109
BseXI	GCAGC	4 cut(s)	74, 313, 341, 376
BseYI	CCCAGC	2 cut(s)	113, 138
BslFI	GGGAC	2 cut(s)	236, 287
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmFI	GGGAC	2 cut(s)	236, 287
BsmI	GAATGC	1 cut(s)	379
Bsp143I	GATC	1 cut(s)	18
Bsp19I	CCATGG	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	3 cut(s)	54, 486, 487
BssMI	GATC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	474
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	202, 469
BstH2I	RGCGCY	1 cut(s)	109
BstHHI	GCGC	2 cut(s)	108, 472
BstKTI	GATC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstNI	CCWGG	1 cut(s)	488
BstNSI	RCATGY	1 cut(s)	476
BstSCI	CCNGG	1 cut(s)	486
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	4 cut(s)	74, 313, 341, 376
BstV2I	GAAGAC	1 cut(s)	301
BstXI	CCANNNNNNTGG	1 cut(s)	430
BtgI	CCRYGG	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	202, 469
BtsIMutI	CAGTG	2 cut(s)	75, 353
Cac8I	GCNNGC	1 cut(s)	474
CfoI	GCGC	2 cut(s)	108, 472
Csp6I	GTAC	1 cut(s)	435
CviAII	CATG	3 cut(s)	7, 55, 473
CviJI	RGCY	6 cut(s)	87, 117, 142, 332, 389, 495
CviKI_1	RGCY	6 cut(s)	87, 117, 142, 332, 389, 495
CviQI	GTAC	1 cut(s)	435
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	486
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	3 cut(s)	10, 58, 476
FaiI	YATR	4 cut(s)	8, 56, 177, 474
FaqI	GGGAC	2 cut(s)	236, 287
FatI	CATG	3 cut(s)	6, 54, 472
FblI	GTMKAC	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	88, 327, 330, 390
FokI	GGATG	2 cut(s)	209, 476
Fsp4HI	GCNGC	4 cut(s)	88, 327, 330, 390
FspBI	CTAG	2 cut(s)	356, 496
GlaI	GCGC	2 cut(s)	107, 471
GluI	GCNGC	4 cut(s)	88, 327, 330, 390
GsaI	CCCAGC	2 cut(s)	117, 142
GsuI	CTGGAG	1 cut(s)	270
HaeII	RGCGCY	1 cut(s)	109
HhaI	GCGC	2 cut(s)	108, 472
Hin1II	CATG	3 cut(s)	10, 58, 476
Hin6I	GCGC	2 cut(s)	106, 470
HinP1I	GCGC	2 cut(s)	106, 470
HincII	GTYRAC	1 cut(s)	278
HindII	GTYRAC	1 cut(s)	278
HinfI	GANTC	4 cut(s)	59, 65, 283, 410
HphI	GGTGA	4 cut(s)	13, 33, 203, 419
Hpy166II	GTNNAC	2 cut(s)	211, 278
Hpy188I	TCNGA	2 cut(s)	64, 372
Hpy188III	TCNNGA	1 cut(s)	127
Hpy8I	GTNNAC	2 cut(s)	211, 278
Hpy99I	CGWCG	1 cut(s)	279
HpyAV	CCTTC	3 cut(s)	182, 359, 394
HpyCH4V	TGCA	1 cut(s)	329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	10, 58, 476
HspAI	GCGC	2 cut(s)	106, 470
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	2 cut(s)	122, 492
LpnPI	CCDG	7 cut(s)	68, 127, 152, 300, 318, 399, 473
Lsp1109I	GCAGC	4 cut(s)	74, 313, 341, 376
MaeI	CTAG	2 cut(s)	356, 496
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	1 cut(s)	301
MluCI	AATT	3 cut(s)	132, 147, 424
MlyI	GAGTC	2 cut(s)	53, 277
MnlI	CCTC	9 cut(s)	34, 40, 105, 130, 187, 223, 238, 388, 454
MspA1I	CMGCKG	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	488
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	488
MwoI	GCNNNNNNNGC	1 cut(s)	114
NcoI	CCATGG	1 cut(s)	54
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	3 cut(s)	10, 58, 476
NspI	RCATGY	1 cut(s)	476
PaeI	GCATGC	1 cut(s)	476
PasI	CCCWGGG	1 cut(s)	487
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	65, 410
PkrI	GCNGC	4 cut(s)	89, 328, 331, 391
PleI	GAGTC	2 cut(s)	53, 277
PpsI	GAGTC	2 cut(s)	53, 277
Psp6I	CCWGG	1 cut(s)	486
PspFI	CCCAGC	2 cut(s)	113, 138
PspGI	CCWGG	1 cut(s)	486
PstI	CTGCAG	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	436
RsaNI	GTAC	1 cut(s)	435
SalI	GTCGAC	1 cut(s)	276
SatI	GCNGC	4 cut(s)	88, 327, 330, 390
Sau3AI	GATC	1 cut(s)	18
SchI	GAGTC	2 cut(s)	53, 277
ScrFI	CCNGG	1 cut(s)	488
SfcI	CTRYAG	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	125, 333
SmoI	CTYRAG	2 cut(s)	125, 333
SphI	GCATGC	1 cut(s)	476
Sse9I	AATT	3 cut(s)	132, 147, 424
SspMI	CTAG	2 cut(s)	356, 496
StyD4I	CCNGG	1 cut(s)	486
StyI	CCWWGG	1 cut(s)	54
TaqI	TCGA	2 cut(s)	277, 413
TasI	AATT	3 cut(s)	132, 147, 424
TfiI	GAWTC	2 cut(s)	65, 410
TscAI	CASTG	2 cut(s)	75, 353
TseI	GCWGC	4 cut(s)	87, 326, 329, 389
TspDTI	ATGAA	1 cut(s)	205
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	2 cut(s)	75, 353
XceI	RCATGY	1 cut(s)	476
XmiI	GTMKAC	1 cut(s)	277
XspI	CTAG	2 cut(s)	356, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.