Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003309

Physical Location & Seq

Genomic Coordinates Reverse (-)

89059165 .. 89066894

Gene Structure 7730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG665600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGACTTACAAGTGTGTAGACAAGAAGAAATTGTTTGATGTATTATACGGAACACAGTTAGAGACTGGGCAGCAGAGGGTCAGAAAGAACGTGATCAATGCTACAGGCCTACAGTTGAAGAACTTGATTCACTATCTGTTGACCGCTAGCCCTCCTGCCTGTTTAGTTCCTGGTGCTGGACTTGGGCGGCTTGCATTGGAGATCTCATGTCGAGGCGTGCATACATTTTGTCAAATTGCTGGAAAGCAGACACTATATCCGTGGATCTACAACAATTGTAATTCACTTTCAGATGATGACCAACTTTGTCCAGTTTCAATGCCAAATATTCATCCCGCTAGTGCAGGGATTACTGAAGGCTTTTCTATGTGTGGCGGTGACTTTGTTGAGGTTTATAACAATCCAAGCCAAGTTTGGACAAATATGGATCCCCTACTATATCACTTTGCAGATGTATATGGACAAGGAGATGATATGTCTATTGAACTGAGTTCGGAGGATGTGAAGAGGGTTGCTTTGCATTATGGATTTCATATAGAGAACCGATACTATGCAGCTTTTTGGGCAATGAGAAAGAGATCAGCAGCCACTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00340 map00340

Pfam Domains

Protein Families

N2227

Protein Analysis

198

Amino Acids

22.12

Weight (kDa)

6.57

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CARME	PF07942	77 - 135	4.3e-12	Carnosine N-methyltransferase
CARME	PF07942	135 - 183	2.2e-10	Carnosine N-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01710 AT4G00520 AT4G00520 AT4G00520
fragaria_vesca	FvH4_7g14192 FvH4_7g14192
malus_domestica	MD01G1058300.v1.1 MD01G1058500.v1.1 MD01G1058600.v1.1 MD01G1058800.v1.1 MD01G1059000.v1.1 MD01G1059100.v1.1
prunus_persica	Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1
pyrus_communis	pycom01g08790 pycom01g08800 pycom01g08810
rosa_chinensis	RchiOBHm_Chr1g0355121 RchiOBHm_Chr2g0172691 RchiOBHm_Chr5g0059521
rosa_laevigata	RLG00000034509
rosa_multiflora	Rmu_sc0007904.1_g000004
rosa_rugosa	Rorug04G0051700
rosa_samantha	Rh1BG226900 Rh1DG254500 Rh2AG328100 Rh2CG617900 Rh2DG665600 Rh3BG328600 Rh3CG366400 Rh4BG185900 Rh5BG399500 Rh5CG423500 Rh6DG388900
rosa_wichuraiana	Rw3G029180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	4 cut(s)	144, 187, 336, 375
AclWI	GGATC	3 cut(s)	272, 422, 435
AcuI	CTGAAG	1 cut(s)	375
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	118, 318, 485
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	1 cut(s)	557
AluI	AGCT	1 cut(s)	557
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	3 cut(s)	272, 422, 435
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	3 cut(s)	70, 554, 584
AsuHPI	GGTGA	1 cut(s)	389
AsuNHI	GCTAGC	1 cut(s)	146
BamHI	GGATCC	1 cut(s)	427
BbvI	GCAGC	2 cut(s)	82, 566
BciT130I	CCWGG	1 cut(s)	171
BclI	TGATCA	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	2 cut(s)	147, 339
BfmI	CTRYAG	2 cut(s)	102, 110
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	4 cut(s)	71, 188, 555, 585
BlsI	GCNGC	4 cut(s)	72, 189, 556, 586
Bme1390I	CCNGG	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	1 cut(s)	171
BmrI	ACTGGG	1 cut(s)	75
BmtI	GCTAGC	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	70, 311
Bse3DI	GCAATG	1 cut(s)	573
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	2 cut(s)	331, 505
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	1 cut(s)	479
BseNI	ACTGG	2 cut(s)	70, 311
BseXI	GCAGC	2 cut(s)	82, 566
BsgI	GTGCAG	1 cut(s)	363
BshFI	GGCC	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	108
Bsp143I	GATC	5 cut(s)	93, 201, 264, 427, 578
BspACI	CCGC	4 cut(s)	144, 187, 336, 375
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	1 cut(s)	480
BspLI	GGNNCC	1 cut(s)	429
BspOI	GCTAGC	1 cut(s)	150
BspPI	GGATC	3 cut(s)	272, 422, 435
BsrDI	GCAATG	1 cut(s)	573
BsrI	ACTGG	2 cut(s)	70, 311
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	5 cut(s)	93, 201, 264, 427, 578
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	2 cut(s)	57, 114
Bst6I	CTCTTC	1 cut(s)	500
BstC8I	GCNNGC	3 cut(s)	148, 192, 218
BstDEI	CTNAG	1 cut(s)	488
BstDSI	CCRYGG	1 cut(s)	260
BstF5I	GGATG	2 cut(s)	331, 505
BstKTI	GATC	5 cut(s)	96, 204, 267, 430, 581
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	5 cut(s)	93, 201, 264, 427, 578
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	2 cut(s)	102, 110
BstV1I	GCAGC	2 cut(s)	82, 566
BstX2I	RGATCY	3 cut(s)	201, 264, 427
BstYI	RGATCY	3 cut(s)	201, 264, 427
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	331, 505
Cac8I	GCNNGC	3 cut(s)	148, 192, 218
CviAII	CATG	1 cut(s)	207
CviJI	RGCY	7 cut(s)	108, 150, 190, 360, 408, 557, 587
CviKI_1	RGCY	7 cut(s)	108, 150, 190, 360, 408, 557, 587
DdeI	CTNAG	1 cut(s)	488
DpnI	GATC	5 cut(s)	95, 203, 266, 429, 580
DpnII	GATC	5 cut(s)	93, 201, 264, 427, 578
Eam1104I	CTCTTC	1 cut(s)	500
EarI	CTCTTC	1 cut(s)	500
Eco147I	AGGCCT	1 cut(s)	108
Eco57I	CTGAAG	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	169
FaeI	CATG	1 cut(s)	210
FatI	CATG	1 cut(s)	206
FauI	CCCGC	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	4 cut(s)	71, 188, 555, 585
FokI	GGATG	2 cut(s)	318, 512
Fsp4HI	GCNGC	4 cut(s)	71, 188, 555, 585
FspBI	CTAG	2 cut(s)	147, 339
GluI	GCNGC	4 cut(s)	71, 188, 555, 585
HaeIII	GGCC	1 cut(s)	108
Hin1II	CATG	1 cut(s)	210
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HinfI	GANTC	1 cut(s)	127
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	2 cut(s)	19, 141
Hpy188I	TCNGA	3 cut(s)	83, 292, 496
Hpy8I	GTNNAC	2 cut(s)	19, 141
HpyAV	CCTTC	1 cut(s)	350
HpyCH4III	ACNGT	2 cut(s)	57, 114
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	6 cut(s)	194, 220, 344, 449, 520, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	1 cut(s)	488
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	210
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	5 cut(s)	93, 201, 264, 427, 578
Lsp1109I	GCAGC	2 cut(s)	82, 566
MaeI	CTAG	2 cut(s)	147, 339
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	5 cut(s)	95, 203, 266, 429, 580
MboI	GATC	5 cut(s)	93, 201, 264, 427, 578
MboII	GAAGA	3 cut(s)	37, 130, 517
MfeI	CAATTG	1 cut(s)	274
MflI	RGATCY	3 cut(s)	201, 264, 427
MluCI	AATT	4 cut(s)	29, 234, 274, 280
MnlI	CCTC	6 cut(s)	69, 162, 206, 382, 490, 501
MseI	TTAA	1 cut(s)	595
MspR9I	CCNGG	1 cut(s)	171
MunI	CAATTG	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	563
NdeII	GATC	5 cut(s)	93, 201, 264, 427, 578
NheI	GCTAGC	1 cut(s)	146
NlaIII	CATG	1 cut(s)	210
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	377
PceI	AGGCCT	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	4 cut(s)	72, 189, 556, 586
PsiI	TTATAA	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	429
PsuI	RGATCY	3 cut(s)	201, 264, 427
SaqAI	TTAA	1 cut(s)	595
SatI	GCNGC	4 cut(s)	71, 188, 555, 585
Sau3AI	GATC	5 cut(s)	93, 201, 264, 427, 578
ScrFI	CCNGG	1 cut(s)	171
SetI	ASST	3 cut(s)	93, 393, 559
SfcI	CTRYAG	2 cut(s)	102, 110
Sse9I	AATT	4 cut(s)	29, 234, 274, 280
SseBI	AGGCCT	1 cut(s)	108
SsiI	CCGC	4 cut(s)	144, 187, 336, 375
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	2 cut(s)	147, 339
StuI	AGGCCT	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	169
TaaI	ACNGT	2 cut(s)	57, 114
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	211
TasI	AATT	4 cut(s)	29, 234, 274, 280
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	595
Tru9I	TTAA	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	3 cut(s)	70, 554, 584
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	2 cut(s)	320, 521
TspGWI	ACGGA	2 cut(s)	63, 249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	411
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	2 cut(s)	147, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.