Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003309

Physical Location & Seq

Genomic Coordinates Forward (+)

7985164 .. 7985430

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0051700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGAGGCTGGCGGGGATGGAGGACACGGCGGAGCTGCTGGAGAAGAAGCAAGCGTCGGAAATTTTGAAGATGAGCTTAGAGGAGGCACTCACTCTCGCTCGTGCTTTCAGCCATTACCTCAAATTGATGGGCATTGCTGAAGTTCATCACAGGTCACTGAACGACTTGGGAAAAAAAAATAGGGTTAAATTTCATATATCTCTTAGTGACATATTTTACAACCAATCGACTCTTGCTTGCTTCATCATCAGTAGTAGCAACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006082 GO:0006139 GO:0006163 GO:0006629 GO:0006631 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009117 GO:0009150 GO:0009259 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010559 GO:0010561 GO:0010605 GO:0016042 GO:0016043 GO:0016054 GO:0016289 GO:0016290 GO:0016559 GO:0016787 GO:0016788 GO:0016790 GO:0019222 GO:0019637 GO:0019693 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031907 GO:0031974 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045223 GO:0045225 GO:0046395 GO:0046483 GO:0047617 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051186 GO:0051246 GO:0051248 GO:0052815 GO:0055086 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072521 GO:0080090 GO:1901135 GO:1901360 GO:1901564 GO:1901575 GO:1903018 GO:1903019 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01100 ko01110 map00062 map01040 map01100 map01110

Pfam Domains

Protein Families

4HBT_3 Acyl_CoA_thio cNMP_binding

Protein Analysis

88

Amino Acids

9.94

Weight (kDa)

7.93

Isoelectric Point (pI)

58.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01710 AT4G00520 AT4G00520 AT4G00520
fragaria_vesca	FvH4_7g14192 FvH4_7g14192
malus_domestica	MD01G1058300.v1.1 MD01G1058500.v1.1 MD01G1058600.v1.1 MD01G1058800.v1.1 MD01G1059000.v1.1 MD01G1059100.v1.1
prunus_persica	Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1
pyrus_communis	pycom01g08790 pycom01g08800 pycom01g08810
rosa_chinensis	RchiOBHm_Chr1g0355121 RchiOBHm_Chr2g0172691 RchiOBHm_Chr5g0059521
rosa_laevigata	RLG00000034509
rosa_multiflora	Rmu_sc0007904.1_g000004
rosa_rugosa	Rorug04G0051700
rosa_samantha	Rh1BG226900 Rh1DG254500 Rh2AG328100 Rh2CG617900 Rh2DG665600 Rh3BG328600 Rh3CG366400 Rh4BG185900 Rh5BG399500 Rh5CG423500 Rh6DG388900
rosa_wichuraiana	Rw3G029180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	11, 29
AcsI	RAATTY	2 cut(s)	60, 188
AcuI	CTGAAG	1 cut(s)	159
AgsI	TTSAA	1 cut(s)	67
AluBI	AGCT	2 cut(s)	34, 75
AluI	AGCT	2 cut(s)	34, 75
ApeKI	GCWGC	1 cut(s)	34
ApoI	RAATTY	2 cut(s)	60, 188
BauI	CACGAG	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	2 cut(s)	10, 121
BceAI	ACGGC	1 cut(s)	42
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	59
Bse3DI	GCAATG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	21
BseMI	GCAATG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	21
BspACI	CCGC	2 cut(s)	11, 29
BsrDI	GCAATG	1 cut(s)	132
BssSI	CACGAG	1 cut(s)	99
Bst2BI	CACGAG	1 cut(s)	99
BstC8I	GCNNGC	3 cut(s)	9, 51, 238
BstDEI	CTNAG	2 cut(s)	76, 203
BstF5I	GGATG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	3 cut(s)	9, 51, 238
CseI	GACGC	1 cut(s)	42
CviJI	RGCY	4 cut(s)	7, 34, 75, 111
CviKI_1	RGCY	4 cut(s)	7, 34, 75, 111
DdeI	CTNAG	2 cut(s)	76, 203
EciI	GGCGGA	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	159
FaiI	YATR	3 cut(s)	195, 197, 212
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FauI	CCCGC	1 cut(s)	4
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	1 cut(s)	28
Fsp4HI	GCNGC	1 cut(s)	35
GluI	GCNGC	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	229
Hpy188I	TCNGA	1 cut(s)	58
Hpy99I	CGWCG	1 cut(s)	58
HpyF3I	CTNAG	2 cut(s)	76, 203
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	2 cut(s)	23, 136
Lsp1109I	GCAGC	1 cut(s)	21
MaeIII	GTNAC	2 cut(s)	153, 206
MboII	GAAGA	2 cut(s)	55, 79
MluCI	AATT	3 cut(s)	60, 122, 188
MlyI	GAGTC	1 cut(s)	223
MmeI	TCCRAC	1 cut(s)	36
MnlI	CCTC	4 cut(s)	13, 73, 76, 128
MseI	TTAA	2 cut(s)	186, 265
NmuCI	GTSAC	2 cut(s)	153, 206
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
SaqAI	TTAA	2 cut(s)	186, 265
SatI	GCNGC	1 cut(s)	35
SchI	GAGTC	1 cut(s)	223
SetI	ASST	4 cut(s)	36, 77, 120, 155
Sse9I	AATT	3 cut(s)	60, 122, 188
SsiI	CCGC	2 cut(s)	11, 29
TaqI	TCGA	1 cut(s)	227
TasI	AATT	3 cut(s)	60, 122, 188
Tru1I	TTAA	2 cut(s)	186, 265
Tru9I	TTAA	2 cut(s)	186, 265
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	2 cut(s)	153, 206
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	2 cut(s)	153, 206
TspDTI	ATGAA	3 cut(s)	134, 182, 232
TspRI	CASTG	1 cut(s)	162
XapI	RAATTY	2 cut(s)	60, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.