Rh6DG388900

Acyl-coenzyme A thioesterase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0003309
Physical Location & Seq
Forward (+)
58173712 .. 58174121
410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG388900.1

Sequence Viewer

Length: 228 bp
ATGGACTCCGAATCAGTGATTGAGTTTCTGGGCTGCGTTCCTCTGCTTCAGCGCCTACCTAGCTCCTCGCTCATGAAAATCGCCCAGCTCGTAATTCCAAAGCACTACGATAAAGGAGAGTATGTTGTTCGTGAAGGTGAGGATGGGATTGGGGTTTACTTCATTTGGGAAGGAGAGGTTAGTTTTTGTGAGGGGTCAACAGCGCCACTTCTATCTCGCCGTCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006082 GO:0006139 GO:0006163 GO:0006629 GO:0006631 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009117 GO:0009150 GO:0009259 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010559 GO:0010561 GO:0010605 GO:0016042 GO:0016043 GO:0016054 GO:0016289 GO:0016290 GO:0016559 GO:0016787 GO:0016788 GO:0016790 GO:0019222 GO:0019637 GO:0019693 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031907 GO:0031974 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045223 GO:0045225 GO:0046395 GO:0046483 GO:0047617 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051186 GO:0051246 GO:0051248 GO:0052815 GO:0055086 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072521 GO:0080090 GO:1901135 GO:1901360 GO:1901564 GO:1901575 GO:1903018 GO:1903019 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko00062 ko01040 ko01100 ko01110 map00062 map01040 map01100 map01110
Pfam Domains
Protein Families
4HBT_3 Acyl_CoA_thio cNMP_binding

Protein Analysis

75

Amino Acids

8.43

Weight (kDa)

5.0

Isoelectric Point (pI)

62.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 32
AluBI AGCT 2 cut(s) 63, 88
AluI AGCT 2 cut(s) 63, 88
ApeKI GCWGC 1 cut(s) 33
AspLEI GCGC 2 cut(s) 54, 205
AsuHPI GGTGA 1 cut(s) 149
BbvI GCAGC 1 cut(s) 20
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 204
BfaI CTAG 1 cut(s) 60
BfoI RGCGCY 2 cut(s) 55, 206
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
BseGI GGATG 1 cut(s) 148
BseRI GAGGAG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 20
BseYI CCCAGC 1 cut(s) 84
BspHI TCATGA 1 cut(s) 72
BstF5I GGATG 1 cut(s) 148
BstH2I RGCGCY 2 cut(s) 55, 206
BstHHI GCGC 2 cut(s) 54, 205
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstV1I GCAGC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 21
CciI TCATGA 1 cut(s) 72
CfoI GCGC 2 cut(s) 54, 205
CviAII CATG 1 cut(s) 73
CviJI RGCY 3 cut(s) 33, 63, 88
CviKI_1 RGCY 3 cut(s) 33, 63, 88
Eco57I CTGAAG 1 cut(s) 32
FaeI CATG 1 cut(s) 76
FaiI YATR 2 cut(s) 74, 123
FatI CATG 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 34
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 34
FspBI CTAG 1 cut(s) 60
GlaI GCGC 2 cut(s) 53, 204
GluI GCNGC 1 cut(s) 34
GsaI CCCAGC 1 cut(s) 88
HaeII RGCGCY 2 cut(s) 55, 206
HhaI GCGC 2 cut(s) 54, 205
Hin1II CATG 1 cut(s) 76
Hin6I GCGC 2 cut(s) 52, 203
HinP1I GCGC 2 cut(s) 52, 203
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HinfI GANTC 2 cut(s) 5, 11
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 2 cut(s) 157, 198
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 2 cut(s) 73, 131
Hpy8I GTNNAC 2 cut(s) 157, 198
Hpy99I CGWCG 1 cut(s) 225
HpyAV CCTTC 2 cut(s) 128, 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
Hsp92II CATG 1 cut(s) 76
HspAI GCGC 2 cut(s) 52, 203
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 2 cut(s) 14, 98
Lsp1109I GCAGC 1 cut(s) 20
MaeI CTAG 1 cut(s) 60
MluCI AATT 1 cut(s) 93
MnlI CCTC 5 cut(s) 51, 76, 133, 169, 184
MwoI GCNNNNNNNGC 1 cut(s) 60
NlaIII CATG 1 cut(s) 76
PagI TCATGA 1 cut(s) 72
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 1 cut(s) 11
PkrI GCNGC 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 84
SatI GCNGC 1 cut(s) 34
SetI ASST 5 cut(s) 61, 65, 90, 139, 180
SgeI CNNG 7 cut(s) 41, 72, 79, 85, 97, 101, 143
Sse9I AATT 1 cut(s) 93
SspMI CTAG 1 cut(s) 60
TaqI TCGA 1 cut(s) 223
TasI AATT 1 cut(s) 93
TfiI GAWTC 1 cut(s) 11
TscAI CASTG 1 cut(s) 21
TseI GCWGC 1 cut(s) 33
TspDTI ATGAA 2 cut(s) 89, 151
TspRI CASTG 1 cut(s) 21
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.