Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003309

Physical Location & Seq

Genomic Coordinates Reverse (-)

79338090 .. 79344081

Gene Structure 5992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG617900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCTTCGATTAAGGAGTGAAGCAATATGGAACATATCTTCATTTCGGTTTGATGTATTATACGGAACACAGTTAGAGACTGGGCAGCAGAGGGTCAGAAAGAACGTGATCAATGCTACAGGCCTACAGTTGAAGAACTTGATTCACTATCTGTTGACCGCTAGCCCTCCTGCCTGTTTAGTTCCTGGTGCTGGACTTGGGCGGCTTGCATTGGAGATCTCATGTCGAGGCGTGCATACATTTTGTCAAATTGCTGGAAAGCAGACACTATATCCGTGGATCTACAACAATTGTAATTCACTTTCAGATGATGACCAACTTTGTCCAGTTTCAATGCCAAATATTCATCCCGCTAGTGCAGGGATTACTGAAGGCTTTTCTATGTGTGGCGGTGACTTTGTTGAGGTTTATAACAATCCAAGCCAAGTTTGGACAAATATGGATCCCCTACTATATCACTTTGCAGATGTATATGGACAAGGAGATGATATGTCTATTGAACTGAGTTCGGAGGATGTGAAGAGGGTTGCTTTGCATTATGGATTTCATATAGAGAACCGATACTATGCAGCTTTTTGGGCAATGAGAAAGAGATCAGCAGCCACTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00340 map00340

Pfam Domains

Protein Families

N2227

Protein Analysis

203

Amino Acids

22.74

Weight (kDa)

6.28

Isoelectric Point (pI)

58.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CARME	PF07942	82 - 140	4.5e-12	Carnosine N-methyltransferase
CARME	PF07942	140 - 188	2.3e-10	Carnosine N-methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01710 AT4G00520 AT4G00520 AT4G00520
fragaria_vesca	FvH4_7g14192 FvH4_7g14192
malus_domestica	MD01G1058300.v1.1 MD01G1058500.v1.1 MD01G1058600.v1.1 MD01G1058800.v1.1 MD01G1059000.v1.1 MD01G1059100.v1.1
prunus_persica	Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1
pyrus_communis	pycom01g08790 pycom01g08800 pycom01g08810
rosa_chinensis	RchiOBHm_Chr1g0355121 RchiOBHm_Chr2g0172691 RchiOBHm_Chr5g0059521
rosa_laevigata	RLG00000034509
rosa_multiflora	Rmu_sc0007904.1_g000004
rosa_rugosa	Rorug04G0051700
rosa_samantha	Rh1BG226900 Rh1DG254500 Rh2AG328100 Rh2CG617900 Rh2DG665600 Rh3BG328600 Rh3CG366400 Rh4BG185900 Rh5BG399500 Rh5CG423500 Rh6DG388900
rosa_wichuraiana	Rw3G029180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AciI	CCGC	4 cut(s)	159, 202, 351, 390
AclWI	GGATC	3 cut(s)	287, 437, 450
AcuI	CTGAAG	1 cut(s)	390
AfiI	CCNNNNNNNGG	1 cut(s)	191
AgsI	TTSAA	3 cut(s)	133, 333, 500
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	1 cut(s)	572
AluI	AGCT	1 cut(s)	572
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	3 cut(s)	287, 437, 450
AoxI	GGCC	1 cut(s)	121
ApeKI	GCWGC	3 cut(s)	85, 569, 599
AsuHPI	GGTGA	1 cut(s)	404
AsuNHI	GCTAGC	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	442
BbvI	GCAGC	2 cut(s)	97, 581
BciT130I	CCWGG	1 cut(s)	186
BclI	TGATCA	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	2 cut(s)	162, 354
BfmI	CTRYAG	2 cut(s)	117, 125
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	4 cut(s)	86, 203, 570, 600
BlsI	GCNGC	4 cut(s)	87, 204, 571, 601
Bme1390I	CCNGG	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	1 cut(s)	186
BmrI	ACTGGG	1 cut(s)	90
BmtI	GCTAGC	1 cut(s)	165
BmuI	ACTGGG	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	85, 326
Bse3DI	GCAATG	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	2 cut(s)	346, 520
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMI	GCAATG	1 cut(s)	588
BseMII	CTCAG	1 cut(s)	494
BseNI	ACTGG	2 cut(s)	85, 326
BseXI	GCAGC	2 cut(s)	97, 581
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	123
Bsp143I	GATC	5 cut(s)	108, 216, 279, 442, 593
BspACI	CCGC	4 cut(s)	159, 202, 351, 390
BspANI	GGCC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	495
BspLI	GGNNCC	1 cut(s)	444
BspOI	GCTAGC	1 cut(s)	165
BspPI	GGATC	3 cut(s)	287, 437, 450
BsrDI	GCAATG	1 cut(s)	588
BsrI	ACTGG	2 cut(s)	85, 326
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	5 cut(s)	108, 216, 279, 442, 593
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	72, 129
Bst6I	CTCTTC	1 cut(s)	515
BstC8I	GCNNGC	3 cut(s)	163, 207, 233
BstDEI	CTNAG	1 cut(s)	503
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	2 cut(s)	346, 520
BstKTI	GATC	5 cut(s)	111, 219, 282, 445, 596
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	5 cut(s)	108, 216, 279, 442, 593
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstNI	CCWGG	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	184
BstSFI	CTRYAG	2 cut(s)	117, 125
BstV1I	GCAGC	2 cut(s)	97, 581
BstX2I	RGATCY	3 cut(s)	216, 279, 442
BstYI	RGATCY	3 cut(s)	216, 279, 442
BsuRI	GGCC	1 cut(s)	123
BtgI	CCRYGG	1 cut(s)	275
BtsCI	GGATG	2 cut(s)	346, 520
Cac8I	GCNNGC	3 cut(s)	163, 207, 233
CviAII	CATG	1 cut(s)	222
CviJI	RGCY	7 cut(s)	123, 165, 205, 375, 423, 572, 602
CviKI_1	RGCY	7 cut(s)	123, 165, 205, 375, 423, 572, 602
DdeI	CTNAG	1 cut(s)	503
DpnI	GATC	5 cut(s)	110, 218, 281, 444, 595
DpnII	GATC	5 cut(s)	108, 216, 279, 442, 593
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
Eco147I	AGGCCT	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	184
FaeI	CATG	1 cut(s)	225
FatI	CATG	1 cut(s)	221
FauI	CCCGC	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	4 cut(s)	86, 203, 570, 600
FokI	GGATG	2 cut(s)	333, 527
Fsp4HI	GCNGC	4 cut(s)	86, 203, 570, 600
FspBI	CTAG	2 cut(s)	162, 354
GluI	GCNGC	4 cut(s)	86, 203, 570, 600
HaeIII	GGCC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	156
HindII	GTYRAC	1 cut(s)	156
HinfI	GANTC	1 cut(s)	142
HphI	GGTGA	1 cut(s)	404
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	3 cut(s)	98, 307, 511
Hpy8I	GTNNAC	1 cut(s)	156
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	2 cut(s)	72, 129
HpyCH4IV	ACGT	1 cut(s)	105
HpyCH4V	TGCA	6 cut(s)	209, 235, 359, 464, 535, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpyF3I	CTNAG	1 cut(s)	503
HpySE526I	ACGT	1 cut(s)	105
Hsp92II	CATG	1 cut(s)	225
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	5 cut(s)	108, 216, 279, 442, 593
Lsp1109I	GCAGC	2 cut(s)	97, 581
MaeI	CTAG	2 cut(s)	162, 354
MaeII	ACGT	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	392
MalI	GATC	5 cut(s)	110, 218, 281, 444, 595
MboI	GATC	5 cut(s)	108, 216, 279, 442, 593
MboII	GAAGA	3 cut(s)	30, 145, 532
MfeI	CAATTG	1 cut(s)	289
MflI	RGATCY	3 cut(s)	216, 279, 442
MluCI	AATT	3 cut(s)	249, 289, 295
MnlI	CCTC	6 cut(s)	84, 177, 221, 397, 505, 516
MseI	TTAA	2 cut(s)	11, 610
MspR9I	CCNGG	1 cut(s)	186
MunI	CAATTG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	578
NdeII	GATC	5 cut(s)	108, 216, 279, 442, 593
NheI	GCTAGC	1 cut(s)	161
NlaIII	CATG	1 cut(s)	225
NlaIV	GGNNCC	1 cut(s)	444
NmuCI	GTSAC	1 cut(s)	392
PceI	AGGCCT	1 cut(s)	123
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	4 cut(s)	87, 204, 571, 601
PsiI	TTATAA	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	184
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	444
PsuI	RGATCY	3 cut(s)	216, 279, 442
SaqAI	TTAA	2 cut(s)	11, 610
SatI	GCNGC	4 cut(s)	86, 203, 570, 600
Sau3AI	GATC	5 cut(s)	108, 216, 279, 442, 593
ScrFI	CCNGG	1 cut(s)	186
SetI	ASST	3 cut(s)	108, 408, 574
SfcI	CTRYAG	2 cut(s)	117, 125
Sse9I	AATT	3 cut(s)	249, 289, 295
SseBI	AGGCCT	1 cut(s)	123
SsiI	CCGC	4 cut(s)	159, 202, 351, 390
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	2 cut(s)	162, 354
StuI	AGGCCT	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	184
TaaI	ACNGT	2 cut(s)	72, 129
TaiI	ACGT	1 cut(s)	108
TaqI	TCGA	2 cut(s)	7, 226
TasI	AATT	3 cut(s)	249, 289, 295
TauI	GCSGC	1 cut(s)	205
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	11, 610
Tru9I	TTAA	2 cut(s)	11, 610
TseFI	GTSAC	1 cut(s)	392
TseI	GCWGC	3 cut(s)	85, 569, 599
Tsp45I	GTSAC	1 cut(s)	392
TspDTI	ATGAA	3 cut(s)	30, 335, 536
TspGWI	ACGGA	2 cut(s)	78, 264
XcmI	CCANNNNNNNNNTGG	1 cut(s)	426
XspI	CTAG	2 cut(s)	162, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.