Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003309

Physical Location & Seq

Genomic Coordinates Reverse (-)

9732533 .. 9733084

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGACTCGGAATCAGTAATTGAGTTCCTGGGCCTTGTTCCTCTGCTTCAGAGGCTCCCCAGCTCCTCTCTCAAGAGAATCGCCCAGCTCGTCATTGTCAAACACTACGAGAGTGGAGAGTATGTTGTTCGCGAAGGCGAAACAGGGGACGGGGTTTACTTCATATGGGAAGGAGAGGTTAGTTTGATTTTGATTGGTTATTGGTTAGTTGAACTGGAAGTTGGTGAGCTGGAGTCTGATTCAGCAGGTTGCTTACACAGGCTGAAGTTACTGGTTCTGTTAATGCTGAAGGAAATCGACCTGAGTTCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005782 GO:0006082 GO:0006139 GO:0006163 GO:0006629 GO:0006631 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009117 GO:0009150 GO:0009259 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010556 GO:0010558 GO:0010559 GO:0010561 GO:0010605 GO:0016042 GO:0016043 GO:0016054 GO:0016289 GO:0016290 GO:0016559 GO:0016787 GO:0016788 GO:0016790 GO:0019222 GO:0019637 GO:0019693 GO:0019752 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031907 GO:0031974 GO:0032787 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035383 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043648 GO:0043649 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0045223 GO:0045225 GO:0046395 GO:0046483 GO:0047617 GO:0048285 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051186 GO:0051246 GO:0051248 GO:0052815 GO:0055086 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0072329 GO:0072521 GO:0080090 GO:1901135 GO:1901360 GO:1901564 GO:1901575 GO:1903018 GO:1903019 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

ko00062 ko01040 ko01100 ko01110 map00062 map01040 map01100 map01110

Pfam Domains

Protein Families

4HBT_3 Acyl_CoA_thio cNMP_binding

Protein Analysis

105

Amino Acids

11.68

Weight (kDa)

4.52

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01710 AT4G00520 AT4G00520 AT4G00520
fragaria_vesca	FvH4_7g14192 FvH4_7g14192
malus_domestica	MD01G1058300.v1.1 MD01G1058500.v1.1 MD01G1058600.v1.1 MD01G1058800.v1.1 MD01G1059000.v1.1 MD01G1059100.v1.1
prunus_persica	Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1 Prupe.2G169700_v2.0.a1
pyrus_communis	pycom01g08790 pycom01g08800 pycom01g08810
rosa_chinensis	RchiOBHm_Chr1g0355121 RchiOBHm_Chr2g0172691 RchiOBHm_Chr5g0059521
rosa_laevigata	RLG00000034509
rosa_multiflora	Rmu_sc0007904.1_g000004
rosa_rugosa	Rorug04G0051700
rosa_samantha	Rh1BG226900 Rh1DG254500 Rh2AG328100 Rh2CG617900 Rh2DG665600 Rh3BG328600 Rh3CG366400 Rh4BG185900 Rh5BG399500 Rh5CG423500 Rh6DG388900
rosa_wichuraiana	Rw3G029180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	236
AccII	CGCG	1 cut(s)	132
AcuI	CTGAAG	3 cut(s)	32, 284, 308
AgsI	TTSAA	2 cut(s)	212, 309
AjnI	CCWGG	1 cut(s)	27
AjuI	GAANNNNNNNTTGG	2 cut(s)	204, 236
AluBI	AGCT	3 cut(s)	63, 88, 229
AluI	AGCT	3 cut(s)	63, 88, 229
AoxI	GGCC	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	29
BfuAI	ACCTGC	1 cut(s)	236
Bme1390I	CCNGG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	28
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bse1I	ACTGG	2 cut(s)	219, 276
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	2 cut(s)	219, 276
BseRI	GAGGAG	1 cut(s)	55
BseYI	CCCAGC	2 cut(s)	59, 84
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	33
Bsp68I	TCGCGA	1 cut(s)	132
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	56
BspMI	ACCTGC	1 cut(s)	236
BsrI	ACTGG	2 cut(s)	219, 276
BssECI	CCNNGG	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	29
BstDEI	CTNAG	1 cut(s)	302
BstFNI	CGCG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	27
BstUI	CGCG	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	33
BtuMI	TCGCGA	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	236
Cfr13I	GGNCC	1 cut(s)	31
CviJI	RGCY	6 cut(s)	33, 55, 63, 88, 229, 262
CviKI_1	RGCY	6 cut(s)	33, 55, 63, 88, 229, 262
DdeI	CTNAG	1 cut(s)	302
Eco57I	CTGAAG	3 cut(s)	32, 284, 308
EcoRII	CCWGG	1 cut(s)	27
FaiI	YATR	3 cut(s)	123, 164, 166
FaqI	GGGAC	1 cut(s)	161
FauNDI	CATATG	1 cut(s)	164
GsaI	CCCAGC	2 cut(s)	63, 88
GsuI	CTGGAG	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	33
HinfI	GANTC	5 cut(s)	5, 11, 78, 233, 239
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	3 cut(s)	10, 51, 238
Hpy188III	TCNNGA	2 cut(s)	73, 131
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	3 cut(s)	128, 164, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	1 cut(s)	302
LmnI	GCTCC	2 cut(s)	60, 68
MaeIII	GTNAC	1 cut(s)	267
MluCI	AATT	2 cut(s)	18, 310
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	4 cut(s)	45, 51, 76, 169
MseI	TTAA	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	29
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeI	CATATG	1 cut(s)	164
NlaIV	GGNNCC	1 cut(s)	56
NruI	TCGCGA	1 cut(s)	132
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PfeI	GAWTC	3 cut(s)	11, 78, 239
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
Psp6I	CCWGG	1 cut(s)	27
PspFI	CCCAGC	2 cut(s)	59, 84
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	31
RruI	TCGCGA	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	281
Sau96I	GGNCC	1 cut(s)	31
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	29
SetI	ASST	6 cut(s)	65, 90, 180, 231, 250, 303
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	2 cut(s)	18, 310
StyD4I	CCNGG	1 cut(s)	27
TaqI	TCGA	1 cut(s)	297
TasI	AATT	2 cut(s)	18, 310
TfiI	GAWTC	3 cut(s)	11, 78, 239
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TspDTI	ATGAA	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.