RLG00000034509

UPF0586 protein C9orf41 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003309
Physical Location & Seq
Reverse (-)
44004184 .. 44006637
2454 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034509

Sequence Viewer

Length: 654 bp
ATGTCTATCACCTTCCCATTTCAGGTCCCTCGCCAAAAACCCAAAACTCCAAACCCTAAATTCATCGAATTCCGGGCTAAACGCCTACCCAGCTCCTCGCTCAAGCAAATCGCCCAGCTCGTAATTCCAAAAAGCGCTACGATAAAGGAGATTATGTTGTTCGTGAAGGTGGGGATGGGATTGGGGTTTACTTCATTTGGGAAGGAGAGGTTAGTTTTTGTGAGGGGTCAACAACGCCGCTTCTATCTCGCCGTCGACAGACTCCAGTTCAAGATGGCCGTAGCTGGAAGGCGTCCCTATCTTCCAATGGTGGTCTGCTGCAGTTCATGTGACGAGCTCGACGCCGTCGGCTCTGCCGTCGCAACCACCCCCTATATCTCTTTATCCCCTCTGTTGTCAAACTACTGGGGAGTGGACAATATATCCGTGGATCCACAGCAATTTGCAGGGATTACTGAAGGCTTTTCTATGTGTGGCGGTGACTTTGTTGAGGTTTATAACGATCCAAGCCAAGTAGGTGCTTGGGATGCGTTTGTGACCTGTTTCTATATTGATACAGCACACAACATTGTTGAATACATTGAAACCATATCAAGAATCTTGAGAGGCATAAGTTATTCACTCTTTATTGATATGGACAAGGAGATGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00340 map00340
Pfam Domains
Protein Families
N2227

Protein Analysis

218

Amino Acids

24.39

Weight (kDa)

8.57

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CARME PF07942 143 - 202 3.1e-16 Carnosine N-methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 498
AccI GTMKAC 1 cut(s) 255
AciI CCGC 2 cut(s) 238, 477
AclWI GGATC 3 cut(s) 425, 438, 497
AcoI YGGCCR 1 cut(s) 276
AcsI RAATTY 2 cut(s) 59, 68
AcuI CTGAAG 1 cut(s) 477
AcyI GRCGYC 2 cut(s) 292, 342
AfeI AGCGCT 1 cut(s) 136
AfiI CCNNNNNNNGG 1 cut(s) 22
AgsI TTSAA 3 cut(s) 271, 575, 584
AluBI AGCT 4 cut(s) 93, 118, 284, 337
AluI AGCT 4 cut(s) 93, 118, 284, 337
Alw21I GWGCWC 1 cut(s) 339
AlwI GGATC 3 cut(s) 425, 438, 497
Aor51HI AGCGCT 1 cut(s) 136
AoxI GGCC 1 cut(s) 276
ApeKI GCWGC 1 cut(s) 318
ApoI RAATTY 2 cut(s) 59, 68
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 491
AvaII GGWCC 1 cut(s) 25
BamHI GGATCC 1 cut(s) 430
BanII GRGCYC 1 cut(s) 339
Bbv12I GWGCWC 1 cut(s) 339
BbvI GCAGC 1 cut(s) 305
BccI CCATC 2 cut(s) 169, 268
BceAI ACGGC 4 cut(s) 236, 263, 329, 341
BcnI CCSGG 1 cut(s) 74
BfmI CTRYAG 1 cut(s) 319
BfoI RGCGCY 1 cut(s) 138
BisI GCNGC 2 cut(s) 238, 319
BlsI GCNGC 2 cut(s) 239, 320
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 2 cut(s) 27, 432
BmrFI CCNGG 1 cut(s) 74
BmrI ACTGGG 1 cut(s) 415
BmsI GCATC 1 cut(s) 517
BmuI ACTGGG 1 cut(s) 415
BpmI CTGGAG 1 cut(s) 248
BpuEI CTTGAG 2 cut(s) 86, 622
BpuMI CCSGG 1 cut(s) 74
BsaHI GRCGYC 2 cut(s) 292, 342
BsaJI CCNNGG 1 cut(s) 426
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse1I ACTGG 2 cut(s) 265, 410
BseDI CCNNGG 1 cut(s) 426
BseGI GGATG 2 cut(s) 180, 532
BseLI CCNNNNNNNGG 1 cut(s) 22
BseNI ACTGG 2 cut(s) 265, 410
BseRI GAGGAG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 305
BseYI CCCAGC 2 cut(s) 89, 114
BshFI GGCC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 339
BsiSI CCGG 1 cut(s) 73
BslFI GGGAC 2 cut(s) 11, 279
BslI CCNNNNNNNGG 1 cut(s) 22
BsmFI GGGAC 2 cut(s) 11, 279
BsnI GGCC 1 cut(s) 278
Bsp1286I GDGCHC 1 cut(s) 339
Bsp143I GATC 2 cut(s) 430, 502
BspACI CCGC 2 cut(s) 238, 477
BspANI GGCC 1 cut(s) 278
BspLI GGNNCC 2 cut(s) 27, 432
BspMAI CTGCAG 1 cut(s) 323
BspPI GGATC 3 cut(s) 425, 438, 497
BsrI ACTGG 2 cut(s) 265, 410
BssECI CCNNGG 1 cut(s) 426
BssMI GATC 2 cut(s) 430, 502
BssNI GRCGYC 2 cut(s) 292, 342
BstACI GRCGYC 2 cut(s) 292, 342
BstDSI CCRYGG 1 cut(s) 426
BstF5I GGATG 2 cut(s) 180, 532
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 2 cut(s) 433, 505
BstMBI GATC 2 cut(s) 430, 502
BstMWI GCNNNNNNNGC 2 cut(s) 90, 527
BstSCI CCNGG 1 cut(s) 72
BstSFI CTRYAG 1 cut(s) 319
BstV1I GCAGC 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuRI GGCC 1 cut(s) 278
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 2 cut(s) 180, 532
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 1 cut(s) 25
CseI GACGC 2 cut(s) 281, 350
CviAII CATG 1 cut(s) 327
CviJI RGCY 9 cut(s) 77, 93, 118, 278, 284, 337, 351, 462, 510
CviKI_1 RGCY 9 cut(s) 77, 93, 118, 278, 284, 337, 351, 462, 510
DpnI GATC 2 cut(s) 432, 504
DpnII GATC 2 cut(s) 430, 502
EaeI YGGCCR 1 cut(s) 276
Ecl136II GAGCTC 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 339
Eco47I GGWCC 1 cut(s) 25
Eco47III AGCGCT 1 cut(s) 136
Eco53kI GAGCTC 1 cut(s) 337
Eco57I CTGAAG 1 cut(s) 477
EcoICRI GAGCTC 1 cut(s) 337
EcoO109I RGGNCCY 1 cut(s) 25
EcoRI GAATTC 1 cut(s) 68
EcoT38I GRGCYC 1 cut(s) 339
FaeI CATG 1 cut(s) 330
FaqI GGGAC 2 cut(s) 11, 279
FatI CATG 1 cut(s) 326
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 2 cut(s) 238, 319
FokI GGATG 2 cut(s) 187, 539
FriOI GRGCYC 1 cut(s) 339
Fsp4HI GCNGC 2 cut(s) 238, 319
GlaI GCGC 1 cut(s) 136
GluI GCNGC 2 cut(s) 238, 319
GsaI CCCAGC 2 cut(s) 93, 118
GsuI CTGGAG 1 cut(s) 248
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 1 cut(s) 278
HapII CCGG 1 cut(s) 73
HgaI GACGC 2 cut(s) 281, 350
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 2 cut(s) 292, 342
Hin1II CATG 1 cut(s) 330
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 2 cut(s) 230, 256
HindII GTYRAC 2 cut(s) 230, 256
HinfI GANTC 2 cut(s) 261, 597
HpaII CCGG 1 cut(s) 73
HphI GGTGA 1 cut(s) 491
Hpy166II GTNNAC 4 cut(s) 189, 230, 256, 415
Hpy188III TCNNGA 4 cut(s) 163, 271, 594, 601
Hpy8I GTNNAC 4 cut(s) 189, 230, 256, 415
Hpy99I CGWCG 4 cut(s) 257, 344, 350, 362
HpyAV CCTTC 5 cut(s) 22, 160, 196, 282, 452
HpyCH4V TGCA 2 cut(s) 321, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 90, 527
Hsp92I GRCGYC 2 cut(s) 292, 342
Hsp92II CATG 1 cut(s) 330
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 2 cut(s) 430, 502
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 9 cut(s) 8, 86, 103, 128, 270, 278, 391, 432, 553
Lsp1109I GCAGC 1 cut(s) 305
LweI GCATC 1 cut(s) 517
MaeIII GTNAC 3 cut(s) 329, 479, 535
MalI GATC 2 cut(s) 432, 504
MboI GATC 2 cut(s) 430, 502
MboII GAAGA 1 cut(s) 293
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 1 cut(s) 339
MluCI AATT 4 cut(s) 59, 68, 123, 440
MlyI GAGTC 1 cut(s) 255
MnlI CCTC 7 cut(s) 39, 106, 201, 216, 399, 484, 599
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 90, 527
NciI CCSGG 1 cut(s) 74
NdeII GATC 2 cut(s) 430, 502
NlaIII CATG 1 cut(s) 330
NlaIV GGNNCC 2 cut(s) 27, 432
NmuCI GTSAC 3 cut(s) 329, 479, 535
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 354
PfeI GAWTC 1 cut(s) 597
PflFI GACNNNGTC 1 cut(s) 344
PkrI GCNGC 2 cut(s) 239, 320
PleI GAGTC 1 cut(s) 255
PpsI GAGTC 1 cut(s) 255
PpuMI RGGWCCY 1 cut(s) 25
PsiI TTATAA 1 cut(s) 498
Psp124BI GAGCTC 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 25
PspFI CCCAGC 2 cut(s) 89, 114
PspN4I GGNNCC 2 cut(s) 27, 432
PspPI GGNCC 1 cut(s) 25
PspPPI RGGWCCY 1 cut(s) 25
PstI CTGCAG 1 cut(s) 323
PsuI RGATCY 1 cut(s) 430
PsyI GACNNNGTC 1 cut(s) 344
SacI GAGCTC 1 cut(s) 339
SalI GTCGAC 1 cut(s) 254
SatI GCNGC 2 cut(s) 238, 319
Sau3AI GATC 2 cut(s) 430, 502
Sau96I GGNCC 1 cut(s) 25
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 339
SfaNI GCATC 1 cut(s) 517
SfcI CTRYAG 1 cut(s) 319
SinI GGWCC 1 cut(s) 25
SmlI CTYRAG 2 cut(s) 101, 601
SmoI CTYRAG 2 cut(s) 101, 601
Sse9I AATT 4 cut(s) 59, 68, 123, 440
SsiI CCGC 2 cut(s) 238, 477
SstI GAGCTC 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 72
TaqI TCGA 3 cut(s) 66, 255, 339
TasI AATT 4 cut(s) 59, 68, 123, 440
TauI GCSGC 1 cut(s) 240
TfiI GAWTC 1 cut(s) 597
TseFI GTSAC 3 cut(s) 329, 479, 535
TseI GCWGC 1 cut(s) 318
Tsp45I GTSAC 3 cut(s) 329, 479, 535
TspDTI ATGAA 3 cut(s) 52, 183, 315
TspGWI ACGGA 1 cut(s) 415
Tth111I GACNNNGTC 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 25
XapI RAATTY 2 cut(s) 59, 68
XmiI GTMKAC 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.