Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0001959

Physical Location & Seq

Genomic Coordinates Reverse (-)

35861053 .. 35862132

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1276000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAAGGACTTGAGCAAAAATGAGTGGACATATAAGGTTGGAATTGATGGTATGCACAAAGGAAAGTACAAAATTACTGGTCATCATGCTGCTAAGTACAAGTGGAATACAAGAGACATACCAAATGGAAGGATGTTTATTTGGTACAAGACAACTTTCAAAGCTCCTCTAGGGACCGACCCCGTTGTAGTGGATTTGATGGGGTTGGGTAAGGGTCATGCCTGGGTGAATGGCAAGAGCATTGGCAGGTACTGGTCAAGTTACTCTTCAGATGAAATTGGGTGTTCACCAACATGCAACTACCGCGGAGCATACACTGATAAGAAGTGCTTGACAAATTGCGGGCTCCCTTCACAGAGGTGGTACCATGTTCCGCGCTCGTTTCTTCAAGCTGATGATAATGTTCTAGTTTTATTCGACGAGTTTGGAGGCGAACCTAATAATGTCAACCTTCAGACTGTAACAATTGGTAAAGTTTGTGCAAATGCTCATCAAGGGGGAGGCACCTTGGAGCTATCATGCCAGGGAGGAAAAATTCCATCCAATCTTAGATTTGTCAGCTTTGGTGACCCACAAGGCACTTGCGGATCCTTCAGTAGAGGCATATGCGAGTCTCCTCTAGCTTTCTCAGTCATCGAAGAGGCGTGCATTGGCAAAGAAGAATGTTCTATTGATGTTACTGAGGGAAATCTTGGGCCAACCTCTTGCTGGGCGCCGAATCGACTGGTTGTTGAAGTTGATTGTTCTTATAATGTCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

254

Amino Acids

27.86

Weight (kDa)

7.49

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BetaGal_gal-bd	PF21467	47 - 134	3.7e-24	Beta-galactosidase, galactose-binding domain
SUEL_Lectin	PF02140	172 - 248	8.7e-11	D-galactoside/L-rhamnose binding SUEL lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31740 AT2G04060 AT5G20710 AT5G20710
fragaria_vesca	FvH4_1g09120 FvH4_1g09190 FvH4_1g09190 FvH4_1g26380
malus_domestica	MD02G1096400.v1.1 MD03G1276000.v1.1 MD15G1220900.v1.1 MD15G1221000.v1.1
prunus_persica	Prupe.7G194500_v2.0.a1
pyrus_communis	pycom02g07640
rosa_chinensis	RchiOBHm_Chr2g0095511 RchiOBHm_Chr2g0095591 RchiOBHm_Chr5g0030701
rosa_laevigata	RLG00000016574 RLG00000016582 RLG00000016583
rosa_multiflora	Rmu_co8462209.1_g000001 Rmu_sc0003238.1_g000025 Rmu_sc0003238.1_g000028 Rmu_sc0004719.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146240
rosa_rugosa	Rorug02G0051800 Rorug02G0052600 Rorug05G0120200
rosa_samantha	Rh2AG099800 Rh2AG100400 Rh2BG101100 Rh2BG102200 Rh2CG103300 Rh2CG104600 Rh2DG100700 Rh2DG101500 Rh5AG211800 Rh5BG210700 Rh5CG234400 Rh5CG234500 Rh5DG216100
rosa_wichuraiana	Rw2G007570 Rw2G007630 Rw2G007640 Rw5G019420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	750
Acc36I	ACCTGC	1 cut(s)	237
Acc65I	GGTACC	1 cut(s)	363
AccB1I	GGYRCC	3 cut(s)	363, 503, 712
AccI	GTMKAC	1 cut(s)	756
AccII	CGCG	2 cut(s)	306, 376
AciI	CCGC	5 cut(s)	304, 306, 342, 374, 585
AclWI	GGATC	2 cut(s)	582, 595
AcsI	RAATTY	1 cut(s)	534
AcuI	CTGAAG	3 cut(s)	252, 437, 577
AcyI	GRCGYC	1 cut(s)	713
AfaI	GTAC	5 cut(s)	68, 98, 146, 251, 365
AfiI	CCNNNNNNNGG	1 cut(s)	708
AgsI	TTSAA	3 cut(s)	160, 389, 734
AjnI	CCWGG	2 cut(s)	221, 522
AleI	CACNNNNGTG	1 cut(s)	358
AluBI	AGCT	5 cut(s)	164, 392, 514, 561, 623
AluI	AGCT	5 cut(s)	164, 392, 514, 561, 623
Alw26I	GTCTC	2 cut(s)	108, 618
AlwI	GGATC	2 cut(s)	582, 595
AlwNI	CAGNNNCTG	1 cut(s)	252
AoxI	GGCC	1 cut(s)	695
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	534
Asp718I	GGTACC	1 cut(s)	363
AspLEI	GCGC	2 cut(s)	378, 715
AspS9I	GGNCC	2 cut(s)	174, 695
AsuHPI	GGTGA	3 cut(s)	238, 279, 578
AvaII	GGWCC	1 cut(s)	174
BamHI	GGATCC	1 cut(s)	587
BanI	GGYRCC	3 cut(s)	363, 503, 712
BanII	GRGCYC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	3 cut(s)	41, 193, 547
BciT130I	CCWGG	2 cut(s)	223, 524
BcoDI	GTCTC	2 cut(s)	108, 618
BfaI	CTAG	4 cut(s)	170, 407, 620, 760
BfoI	RGCGCY	1 cut(s)	716
BfuAI	ACCTGC	1 cut(s)	237
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	2 cut(s)	223, 524
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	2 cut(s)	174, 695
BmiI	GGNNCC	6 cut(s)	175, 347, 365, 505, 589, 714
BmrFI	CCNGG	2 cut(s)	223, 524
BpuEI	CTTGAG	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	713
BsaJI	CCNNGG	4 cut(s)	222, 304, 507, 523
Bsc4I	CCNNNNNNNGG	1 cut(s)	708
Bse1I	ACTGG	3 cut(s)	82, 257, 729
BseBI	CCWGG	2 cut(s)	223, 524
BseDI	CCNNGG	4 cut(s)	222, 304, 507, 523
BseGI	GGATG	2 cut(s)	138, 539
BseLI	CCNNNNNNNGG	1 cut(s)	708
BseMII	CTCAG	2 cut(s)	642, 672
BseNI	ACTGG	3 cut(s)	82, 257, 729
BseRI	GAGGAG	2 cut(s)	156, 606
BseXI	GCAGC	1 cut(s)	76
BseYI	CCCAGC	1 cut(s)	708
Bsh1236I	CGCG	2 cut(s)	306, 376
BshFI	GGCC	1 cut(s)	697
BshNI	GGYRCC	3 cut(s)	363, 503, 712
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	1 cut(s)	708
BsmAI	GTCTC	2 cut(s)	108, 618
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	697
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	1 cut(s)	587
BspACI	CCGC	5 cut(s)	304, 306, 342, 374, 585
BspANI	GGCC	1 cut(s)	697
BspCNI	CTCAG	2 cut(s)	641, 673
BspFNI	CGCG	2 cut(s)	306, 376
BspLI	GGNNCC	6 cut(s)	175, 347, 365, 505, 589, 714
BspMI	ACCTGC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	582, 595
BspT107I	GGYRCC	3 cut(s)	363, 503, 712
BsrI	ACTGG	3 cut(s)	82, 257, 729
BssECI	CCNNGG	4 cut(s)	222, 304, 507, 523
BssMI	GATC	1 cut(s)	587
BssNI	GRCGYC	1 cut(s)	713
BssT1I	CCWWGG	1 cut(s)	507
Bst2UI	CCWGG	2 cut(s)	223, 524
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	2 cut(s)	271, 633
BstACI	GRCGYC	1 cut(s)	713
BstC8I	GCNNGC	2 cut(s)	344, 646
BstDEI	CTNAG	4 cut(s)	93, 548, 628, 681
BstDSI	CCRYGG	1 cut(s)	304
BstEII	GGTNACC	1 cut(s)	566
BstF5I	GGATG	2 cut(s)	138, 539
BstFNI	CGCG	2 cut(s)	306, 376
BstH2I	RGCGCY	1 cut(s)	716
BstHHI	GCGC	2 cut(s)	378, 715
BstKTI	GATC	1 cut(s)	590
BstMAI	GTCTC	2 cut(s)	108, 618
BstMBI	GATC	1 cut(s)	587
BstMWI	GCNNNNNNNGC	1 cut(s)	303
BstNI	CCWGG	2 cut(s)	223, 524
BstNSI	RCATGY	1 cut(s)	297
BstPI	GGTNACC	1 cut(s)	566
BstSCI	CCNGG	2 cut(s)	221, 522
BstUI	CGCG	2 cut(s)	306, 376
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	587
BstYI	RGATCY	1 cut(s)	587
BsuRI	GGCC	1 cut(s)	697
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	138, 539
BtsIMutI	CAGTG	1 cut(s)	315
BveI	ACCTGC	1 cut(s)	237
Cac8I	GCNNGC	2 cut(s)	344, 646
CaiI	CAGNNNCTG	1 cut(s)	252
CfoI	GCGC	2 cut(s)	378, 715
Cfr13I	GGNCC	2 cut(s)	174, 695
Cfr42I	CCGCGG	1 cut(s)	307
Csp6I	GTAC	5 cut(s)	67, 97, 145, 250, 364
CviAII	CATG	5 cut(s)	86, 218, 294, 368, 519
CviJI	RGCY	7 cut(s)	164, 346, 392, 514, 561, 623, 697
CviKI_1	RGCY	7 cut(s)	164, 346, 392, 514, 561, 623, 697
CviQI	GTAC	5 cut(s)	67, 97, 145, 250, 364
DdeI	CTNAG	4 cut(s)	93, 548, 628, 681
DinI	GGCGCC	1 cut(s)	714
DpnI	GATC	1 cut(s)	589
DpnII	GATC	1 cut(s)	587
Eam1104I	CTCTTC	2 cut(s)	271, 633
EarI	CTCTTC	2 cut(s)	271, 633
Eco130I	CCWWGG	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	174
Eco57I	CTGAAG	3 cut(s)	252, 437, 577
Eco91I	GGTNACC	1 cut(s)	566
EcoO65I	GGTNACC	1 cut(s)	566
EcoRII	CCWGG	2 cut(s)	221, 522
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	1 cut(s)	348
EgeI	GGCGCC	1 cut(s)	714
EheI	GGCGCC	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	5 cut(s)	89, 221, 297, 371, 522
FalI	AAGNNNNNCTT	4 cut(s)	250, 282, 314, 346
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	5 cut(s)	85, 217, 293, 367, 518
FauI	CCCGC	1 cut(s)	335
FauNDI	CATATG	1 cut(s)	605
FblI	GTMKAC	1 cut(s)	756
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	2 cut(s)	145, 526
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	4 cut(s)	170, 407, 620, 760
GlaI	GCGC	2 cut(s)	377, 714
GluI	GCNGC	1 cut(s)	90
GsaI	CCCAGC	1 cut(s)	712
HaeII	RGCGCY	1 cut(s)	716
HaeIII	GGCC	1 cut(s)	697
HhaI	GCGC	2 cut(s)	378, 715
Hin1I	GRCGYC	1 cut(s)	713
Hin1II	CATG	5 cut(s)	89, 221, 297, 371, 522
Hin6I	GCGC	2 cut(s)	376, 713
HinP1I	GCGC	2 cut(s)	376, 713
HincII	GTYRAC	1 cut(s)	448
HindII	GTYRAC	1 cut(s)	448
HinfI	GANTC	2 cut(s)	611, 718
HphI	GGTGA	3 cut(s)	238, 279, 578
Hpy166II	GTNNAC	4 cut(s)	27, 287, 448, 757
Hpy188I	TCNGA	2 cut(s)	271, 456
Hpy8I	GTNNAC	4 cut(s)	27, 287, 448, 757
Hpy99I	CGWCG	1 cut(s)	422
HpyAV	CCTTC	4 cut(s)	123, 360, 461, 601
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4V	TGCA	4 cut(s)	55, 297, 482, 648
HpyF10VI	GCNNNNNNNGC	1 cut(s)	303
HpyF3I	CTNAG	4 cut(s)	93, 548, 628, 681
Hsp92I	GRCGYC	1 cut(s)	713
Hsp92II	CATG	5 cut(s)	89, 221, 297, 371, 522
HspAI	GCGC	2 cut(s)	376, 713
KasI	GGCGCC	1 cut(s)	712
KpnI	GGTACC	1 cut(s)	367
KspI	CCGCGG	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	587
LmnI	GCTCC	4 cut(s)	169, 308, 351, 511
LpnPI	CCDG	9 cut(s)	63, 208, 232, 235, 238, 509, 536, 694, 710
Lsp1109I	GCAGC	1 cut(s)	76
MaeI	CTAG	4 cut(s)	170, 407, 620, 760
MaeIII	GTNAC	4 cut(s)	260, 460, 566, 676
MalI	GATC	1 cut(s)	589
MboI	GATC	1 cut(s)	587
MboII	GAAGA	4 cut(s)	258, 377, 650, 671
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	1 cut(s)	587
MhlI	GDGCHC	1 cut(s)	348
MluCI	AATT	6 cut(s)	42, 72, 276, 337, 465, 534
Mly113I	GGCGCC	1 cut(s)	713
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	19
MslI	CAYNNNNRTG	2 cut(s)	292, 358
MspA1I	CMGCKG	1 cut(s)	306
MspR9I	CCNGG	2 cut(s)	223, 524
MunI	CAATTG	1 cut(s)	465
MvaI	CCWGG	2 cut(s)	223, 524
MvnI	CGCG	2 cut(s)	306, 376
MwoI	GCNNNNNNNGC	1 cut(s)	303
NarI	GGCGCC	1 cut(s)	713
NdeI	CATATG	1 cut(s)	605
NdeII	GATC	1 cut(s)	587
NlaIII	CATG	5 cut(s)	89, 221, 297, 371, 522
NlaIV	GGNNCC	6 cut(s)	175, 347, 365, 505, 589, 714
NmuCI	GTSAC	1 cut(s)	566
NspI	RCATGY	1 cut(s)	297
OliI	CACNNNNGTG	1 cut(s)	358
PfeI	GAWTC	1 cut(s)	718
PkrI	GCNGC	1 cut(s)	91
PleI	GAGTC	1 cut(s)	619
PluTI	GGCGCC	1 cut(s)	716
PpsI	GAGTC	1 cut(s)	619
PsiI	TTATAA	1 cut(s)	750
Psp6I	CCWGG	2 cut(s)	221, 522
PspEI	GGTNACC	1 cut(s)	566
PspFI	CCCAGC	1 cut(s)	708
PspGI	CCWGG	2 cut(s)	221, 522
PspN4I	GGNNCC	6 cut(s)	175, 347, 365, 505, 589, 714
PspPI	GGNCC	2 cut(s)	174, 695
PstNI	CAGNNNCTG	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	587
RsaI	GTAC	5 cut(s)	68, 98, 146, 251, 365
RsaNI	GTAC	5 cut(s)	67, 97, 145, 250, 364
RseI	CAYNNNNRTG	2 cut(s)	292, 358
SacII	CCGCGG	1 cut(s)	307
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	1 cut(s)	587
Sau96I	GGNCC	2 cut(s)	174, 695
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	2 cut(s)	223, 524
SduI	GDGCHC	1 cut(s)	348
SfoI	GGCGCC	1 cut(s)	714
Sfr303I	CCGCGG	1 cut(s)	307
SgrBI	CCGCGG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	174
SmiMI	CAYNNNNRTG	2 cut(s)	292, 358
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	6 cut(s)	42, 72, 276, 337, 465, 534
SsiI	CCGC	5 cut(s)	304, 306, 342, 374, 585
SspDI	GGCGCC	1 cut(s)	712
SspMI	CTAG	4 cut(s)	170, 407, 620, 760
StyD4I	CCNGG	2 cut(s)	221, 522
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	1 cut(s)	460
TaqI	TCGA	3 cut(s)	417, 636, 721
TaqII	GACCGA	1 cut(s)	191
TasI	AATT	6 cut(s)	42, 72, 276, 337, 465, 534
TatI	WGTACW	2 cut(s)	66, 96
TfiI	GAWTC	1 cut(s)	718
TscAI	CASTG	1 cut(s)	322
TseFI	GTSAC	1 cut(s)	566
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	566
TspDTI	ATGAA	2 cut(s)	17, 288
TspRI	CASTG	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	174
XapI	RAATTY	1 cut(s)	534
XceI	RCATGY	1 cut(s)	297
XcmI	CCANNNNNNNNNTGG	1 cut(s)	705
XmiI	GTMKAC	1 cut(s)	756
XspI	CTAG	4 cut(s)	170, 407, 620, 760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.