Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001959

Physical Location & Seq

Genomic Coordinates Forward (+)

5351508 .. 5353585

Gene Structure 2078 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g07640.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGCTCAACCAAACAATAGGACTTTGGTTTAGTAGAGAGCGTGTAATTTGTGAGAGCAGTTCGAGGAAATACATACACCATTTCCTGCCTGGTCTGTTAGTATTCTTCCTGATTAATTGCATAATAGAAGGATATAACACTGCAAAGAACAAGGCTGAAGATGAACCCGAATCATTTGCTTGGTCGTGGAGGTCCGAGACCATTGATGACACCAGACTCCTTGCAATGGGAGAAGGTACTGCGCGCAGATCAAAGGAAGCTGGAAAGGATTCTAGTGATTCTCTTTGGTACATGACAAGTGTTCATCTCAAGAAATACGAACCAATCTGGAGTAAGAACATGGCTTTAAGGGTCAATGGCGCTGGTTTAATTCTTCATGCATATGTCAAAGGGGATCATGTTCTCAATGGGCTCAATACTACGTCTTCAACTATGTTTCTGAGAAAAAATGTCAAGTTACATCCTGGAAAGAACATTATTTCATTGTGGAGTGCTACTGTTGGATTTCCGGCAACTTTCAAAGCTCCACTTGGAACCGATCCAATTGCTGTGGACTTACAAGGTAAAGGTCACTCTTGGATCAGTGGTCATAGTATCGGGCGATATTGGCCGAGTTATTTGTCATACGACACTGATTGTAGTCTCGATGCTTGTGCTTACCGTGGTTCATATGATAACAAGAAGTATTCCTTCAACTGTGGTAATCCTACCCAAAGATGGTACCATGTTCCTCGATCTTTTATGCAAGACGGAGAAAATACAATTGTTTTGTTTGAGGAGTTTGGTGGCAATCCATCTCTTGTGAATTTCCTAACCATCCAAGTTGGAGCTGTCTGTGCCCATGCATATGAGAAGCACACAGTGGAATTGAATGTGTGGGCAAGGAGAAGTGCTCATGTTTCTGACACCAAATTTGGCTCAGCAAACTGCGGTGATGCTGTGAAGAGGCTGGCTGCGGAAGCAATTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

324

Amino Acids

36.21

Weight (kDa)

8.53

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31740 AT2G04060 AT5G20710 AT5G20710
fragaria_vesca	FvH4_1g09120 FvH4_1g09190 FvH4_1g09190 FvH4_1g26380
malus_domestica	MD02G1096400.v1.1 MD03G1276000.v1.1 MD15G1220900.v1.1 MD15G1221000.v1.1
prunus_persica	Prupe.7G194500_v2.0.a1
pyrus_communis	pycom02g07640
rosa_chinensis	RchiOBHm_Chr2g0095511 RchiOBHm_Chr2g0095591 RchiOBHm_Chr5g0030701
rosa_laevigata	RLG00000016574 RLG00000016582 RLG00000016583
rosa_multiflora	Rmu_co8462209.1_g000001 Rmu_sc0003238.1_g000025 Rmu_sc0003238.1_g000028 Rmu_sc0004719.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146240
rosa_rugosa	Rorug02G0051800 Rorug02G0052600 Rorug05G0120200
rosa_samantha	Rh2AG099800 Rh2AG100400 Rh2BG101100 Rh2BG102200 Rh2CG103300 Rh2CG104600 Rh2DG100700 Rh2DG101500 Rh5AG211800 Rh5BG210700 Rh5CG234400 Rh5CG234500 Rh5DG216100
rosa_wichuraiana	Rw2G007570 Rw2G007630 Rw2G007640 Rw5G019420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	720
AccB1I	GGYRCC	1 cut(s)	720
AccII	CGCG	1 cut(s)	244
AciI	CCGC	2 cut(s)	930, 956
AclWI	GGATC	3 cut(s)	402, 533, 587
AcoI	YGGCCR	1 cut(s)	608
AcsI	RAATTY	2 cut(s)	805, 911
AcuI	CTGAAG	1 cut(s)	177
AdeI	CACNNNGTG	1 cut(s)	862
AfaI	GTAC	3 cut(s)	238, 290, 722
AfiI	CCNNNNNNNGG	2 cut(s)	226, 717
AgsI	TTSAA	4 cut(s)	429, 520, 694, 871
AjnI	CCWGG	2 cut(s)	88, 463
AluBI	AGCT	3 cut(s)	260, 524, 830
AluI	AGCT	3 cut(s)	260, 524, 830
Alw21I	GWGCWC	1 cut(s)	895
Alw26I	GTCTC	2 cut(s)	191, 647
AlwI	GGATC	3 cut(s)	402, 533, 587
AoxI	GGCC	1 cut(s)	608
ApeKI	GCWGC	1 cut(s)	953
ApoI	RAATTY	2 cut(s)	805, 911
ArsI	GACNNNNNNTTYG	2 cut(s)	896, 928
AseI	ATTAAT	1 cut(s)	114
Asp700I	GAANNNNTTC	1 cut(s)	268
Asp718I	GGTACC	1 cut(s)	720
AspLEI	GCGC	3 cut(s)	244, 246, 362
AspS9I	GGNCC	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	944
AvaII	GGWCC	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	841
BanI	GGYRCC	1 cut(s)	720
BanII	GRGCYC	1 cut(s)	414
BbsI	GAAGAC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	895
BbvI	GCAGC	1 cut(s)	940
BccI	CCATC	3 cut(s)	711, 802, 824
BcgI	CGANNNNNNTGC	6 cut(s)	158, 192, 527, 561, 635, 669
BciT130I	CCWGG	2 cut(s)	90, 465
BcoDI	GTCTC	2 cut(s)	191, 647
BfaI	CTAG	2 cut(s)	273, 970
BfoI	RGCGCY	1 cut(s)	363
BisI	GCNGC	1 cut(s)	954
BlpI	GCTNAGC	1 cut(s)	919
BlsI	GCNGC	1 cut(s)	955
Bme1390I	CCNGG	2 cut(s)	90, 465
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	2 cut(s)	535, 722
BmrFI	CCNGG	2 cut(s)	90, 465
BmsI	GCATC	2 cut(s)	637, 925
BpiI	GAAGAC	1 cut(s)	417
BplI	GAGNNNNNCTC	2 cut(s)	877, 909
BpmI	CTGGAG	1 cut(s)	349
Bpu1102I	GCTNAGC	1 cut(s)	919
BpuEI	CTTGAG	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	661
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 717
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	2 cut(s)	90, 465
BseDI	CCNNGG	1 cut(s)	661
BseGI	GGATG	2 cut(s)	460, 816
BseLI	CCNNNNNNNGG	2 cut(s)	226, 717
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	2 cut(s)	431, 933
BsePI	GCGCGC	1 cut(s)	242
BseRI	GAGGAG	1 cut(s)	791
BseSI	GKGCMC	1 cut(s)	841
BseXI	GCAGC	1 cut(s)	940
Bsh1236I	CGCG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	610
BshNI	GGYRCC	1 cut(s)	720
BsiHKAI	GWGCWC	1 cut(s)	895
BsiSI	CCGG	1 cut(s)	509
BslI	CCNNNNNNNGG	2 cut(s)	226, 717
BsmAI	GTCTC	2 cut(s)	191, 647
BsnI	GGCC	1 cut(s)	610
Bso31I	GGTCTC	1 cut(s)	191
Bsp1286I	GDGCHC	3 cut(s)	414, 841, 895
Bsp143I	GATC	5 cut(s)	248, 394, 538, 579, 734
Bsp1720I	GCTNAGC	1 cut(s)	919
BspACI	CCGC	2 cut(s)	930, 956
BspANI	GGCC	1 cut(s)	610
BspCNI	CTCAG	2 cut(s)	432, 932
BspFNI	CGCG	1 cut(s)	244
BspLI	GGNNCC	2 cut(s)	535, 722
BspPI	GGATC	3 cut(s)	402, 533, 587
BspT107I	GGYRCC	1 cut(s)	720
BspTNI	GGTCTC	1 cut(s)	191
BsrDI	GCAATG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	661
BssHII	GCGCGC	1 cut(s)	242
BssMI	GATC	5 cut(s)	248, 394, 538, 579, 734
Bst2UI	CCWGG	2 cut(s)	90, 465
Bst4CI	ACNGT	4 cut(s)	499, 662, 698, 862
Bst6I	CTCTTC	1 cut(s)	938
BstC8I	GCNNGC	2 cut(s)	244, 951
BstDEI	CTNAG	2 cut(s)	440, 919
BstDSI	CCRYGG	1 cut(s)	661
BstF5I	GGATG	2 cut(s)	460, 816
BstFNI	CGCG	1 cut(s)	244
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	3 cut(s)	244, 246, 362
BstKTI	GATC	5 cut(s)	251, 397, 541, 582, 737
BstMAI	GTCTC	2 cut(s)	191, 647
BstMBI	GATC	5 cut(s)	248, 394, 538, 579, 734
BstMWI	GCNNNNNNNGC	3 cut(s)	607, 836, 959
BstNI	CCWGG	2 cut(s)	90, 465
BstSCI	CCNGG	2 cut(s)	88, 463
BstSLI	GKGCMC	1 cut(s)	841
BstUI	CGCG	1 cut(s)	244
BstV1I	GCAGC	1 cut(s)	940
BstV2I	GAAGAC	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	610
BtgI	CCRYGG	1 cut(s)	661
BtsCI	GGATG	2 cut(s)	460, 816
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	4 cut(s)	138, 589, 630, 867
Cac8I	GCNNGC	2 cut(s)	244, 951
CfoI	GCGC	3 cut(s)	244, 246, 362
Cfr13I	GGNCC	1 cut(s)	192
Csp6I	GTAC	3 cut(s)	237, 289, 721
CspCI	CAANNNNNGTGG	2 cut(s)	531, 566
CviAII	CATG	7 cut(s)	292, 340, 377, 398, 725, 842, 896
CviQI	GTAC	3 cut(s)	237, 289, 721
DdeI	CTNAG	2 cut(s)	440, 919
DpnI	GATC	5 cut(s)	250, 396, 540, 581, 736
DpnII	GATC	5 cut(s)	248, 394, 538, 579, 734
DraIII	CACNNNGTG	1 cut(s)	862
EaeI	YGGCCR	1 cut(s)	608
Eam1104I	CTCTTC	1 cut(s)	938
EarI	CTCTTC	1 cut(s)	938
Eco24I	GRGCYC	1 cut(s)	414
Eco31I	GGTCTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	192
Eco57I	CTGAAG	1 cut(s)	177
EcoRII	CCWGG	2 cut(s)	88, 463
EcoT22I	ATGCAT	2 cut(s)	382, 847
EcoT38I	GRGCYC	1 cut(s)	414
FaeI	CATG	7 cut(s)	295, 343, 380, 401, 728, 845, 899
FalI	AAGNNNNNCTT	4 cut(s)	513, 545, 674, 706
FatI	CATG	7 cut(s)	291, 339, 376, 397, 724, 841, 895
FauNDI	CATATG	3 cut(s)	382, 670, 847
Fnu4HI	GCNGC	1 cut(s)	954
FokI	GGATG	2 cut(s)	447, 803
FriOI	GRGCYC	1 cut(s)	414
Fsp4HI	GCNGC	1 cut(s)	954
FspBI	CTAG	2 cut(s)	273, 970
GlaI	GCGC	3 cut(s)	243, 245, 361
GluI	GCNGC	1 cut(s)	954
GsuI	CTGGAG	1 cut(s)	349
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	1 cut(s)	509
HhaI	GCGC	3 cut(s)	244, 246, 362
Hin1II	CATG	7 cut(s)	295, 343, 380, 401, 728, 845, 899
Hin6I	GCGC	3 cut(s)	242, 244, 360
HinP1I	GCGC	3 cut(s)	242, 244, 360
HinfI	GANTC	4 cut(s)	170, 216, 269, 278
HpaII	CCGG	1 cut(s)	509
HphI	GGTGA	1 cut(s)	944
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	3 cut(s)	196, 441, 904
Hpy188III	TCNNGA	4 cut(s)	109, 310, 328, 644
Hpy8I	GTNNAC	1 cut(s)	553
HpyAV	CCTTC	3 cut(s)	122, 227, 700
HpyCH4III	ACNGT	4 cut(s)	499, 662, 698, 862
HpyCH4IV	ACGT	1 cut(s)	422
HpyCH4V	TGCA	6 cut(s)	120, 143, 224, 380, 745, 845
HpyF10VI	GCNNNNNNNGC	3 cut(s)	607, 836, 959
HpyF3I	CTNAG	2 cut(s)	440, 919
HpySE526I	ACGT	1 cut(s)	422
Hsp92II	CATG	7 cut(s)	295, 343, 380, 401, 728, 845, 899
HspAI	GCGC	3 cut(s)	242, 244, 360
KpnI	GGTACC	1 cut(s)	724
Kzo9I	GATC	5 cut(s)	248, 394, 538, 579, 734
LmnI	GCTCC	2 cut(s)	529, 827
Lsp1109I	GCAGC	1 cut(s)	940
LweI	GCATC	2 cut(s)	637, 925
MaeI	CTAG	2 cut(s)	273, 970
MaeII	ACGT	1 cut(s)	422
MaeIII	GTNAC	2 cut(s)	456, 569
MalI	GATC	5 cut(s)	250, 396, 540, 581, 736
MboI	GATC	5 cut(s)	248, 394, 538, 579, 734
MboII	GAAGA	5 cut(s)	97, 170, 365, 417, 955
MfeI	CAATTG	2 cut(s)	543, 762
MhlI	GDGCHC	3 cut(s)	414, 841, 895
MluCI	AATT	9 cut(s)	45, 115, 369, 543, 762, 805, 866, 911, 963
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	2 cut(s)	481, 805
MnlI	CCTC	5 cut(s)	57, 183, 741, 769, 939
Mph1103I	ATGCAT	2 cut(s)	382, 847
MroXI	GAANNNNTTC	1 cut(s)	268
MseI	TTAA	3 cut(s)	114, 347, 368
MslI	CAYNNNNRTG	2 cut(s)	381, 846
MspI	CCGG	1 cut(s)	509
MspR9I	CCNGG	2 cut(s)	90, 465
MunI	CAATTG	2 cut(s)	543, 762
MvaI	CCWGG	2 cut(s)	90, 465
MvnI	CGCG	1 cut(s)	244
MwoI	GCNNNNNNNGC	3 cut(s)	607, 836, 959
NdeI	CATATG	3 cut(s)	382, 670, 847
NdeII	GATC	5 cut(s)	248, 394, 538, 579, 734
NlaIII	CATG	7 cut(s)	295, 343, 380, 401, 728, 845, 899
NlaIV	GGNNCC	2 cut(s)	535, 722
NmeAIII	GCCGAG	1 cut(s)	636
NmuCI	GTSAC	1 cut(s)	569
NsiI	ATGCAT	2 cut(s)	382, 847
PauI	GCGCGC	1 cut(s)	242
PdmI	GAANNNNTTC	1 cut(s)	268
PfeI	GAWTC	3 cut(s)	170, 269, 278
PfoI	TCCNGGA	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	955
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
PshBI	ATTAAT	1 cut(s)	114
Psp6I	CCWGG	2 cut(s)	88, 463
PspGI	CCWGG	2 cut(s)	88, 463
PspN4I	GGNNCC	2 cut(s)	535, 722
PspPI	GGNCC	1 cut(s)	192
PteI	GCGCGC	1 cut(s)	242
RsaI	GTAC	3 cut(s)	238, 290, 722
RsaNI	GTAC	3 cut(s)	237, 289, 721
RseI	CAYNNNNRTG	2 cut(s)	381, 846
SaqAI	TTAA	3 cut(s)	114, 347, 368
SatI	GCNGC	1 cut(s)	954
Sau3AI	GATC	5 cut(s)	248, 394, 538, 579, 734
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	2 cut(s)	90, 465
SduI	GDGCHC	3 cut(s)	414, 841, 895
SetI	ASST	8 cut(s)	194, 238, 262, 425, 526, 565, 571, 832
SfaNI	GCATC	2 cut(s)	637, 925
SinI	GGWCC	1 cut(s)	192
SmiMI	CAYNNNNRTG	2 cut(s)	381, 846
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	9 cut(s)	45, 115, 369, 543, 762, 805, 866, 911, 963
SsiI	CCGC	2 cut(s)	930, 956
SspMI	CTAG	2 cut(s)	273, 970
StyD4I	CCNGG	2 cut(s)	88, 463
TaaI	ACNGT	4 cut(s)	499, 662, 698, 862
TaiI	ACGT	1 cut(s)	425
TaqI	TCGA	3 cut(s)	62, 645, 733
TasI	AATT	9 cut(s)	45, 115, 369, 543, 762, 805, 866, 911, 963
TfiI	GAWTC	3 cut(s)	170, 269, 278
Tru1I	TTAA	3 cut(s)	114, 347, 368
Tru9I	TTAA	3 cut(s)	114, 347, 368
TscAI	CASTG	4 cut(s)	145, 589, 637, 867
TseFI	GTSAC	1 cut(s)	569
TseI	GCWGC	1 cut(s)	953
Tsp45I	GTSAC	1 cut(s)	569
TspDTI	ATGAA	5 cut(s)	177, 293, 365, 471, 657
TspGWI	ACGGA	1 cut(s)	765
TspRI	CASTG	4 cut(s)	145, 589, 637, 867
VpaK11BI	GGWCC	1 cut(s)	192
VspI	ATTAAT	1 cut(s)	114
XapI	RAATTY	2 cut(s)	805, 911
XcmI	CCANNNNNNNNNTGG	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	268
XspI	CTAG	2 cut(s)	273, 970
Zsp2I	ATGCAT	2 cut(s)	382, 847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.