Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001959

Physical Location & Seq

Genomic Coordinates Forward (+)

8340882 .. 8344754

Gene Structure 3873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG101100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCACTCCCCAAGAGTTTTGCGTTTTCTCTTTGTTTCTGTCTTTCTGTGATCCTCTGCAGCCTCGTTGCTAATGCTACTGACGTTTCTTATGATGGCAGAGCCATCACCATTGATGGCAAACGAAGGATTTTGAATTCTGGTTCCATACATTATCCTCGAAGTACACCACAAAATTATGGAGGTGGATTTGAGGACATCAAAACTGGAGTAGCTGGTCCTGTTCAATTGGTTGGACAAAGTGGAGATGAAACTGTGATCAAGGATTTGTCAGAACACAAATGGTCATACAAGGTTGGACTCCATGGCTTGAAAGACGAGCTCTTTAGCTCTGCTTCTCGTTTTGCAAATAAATGGTCAGTTGAAGGTTTACCAGTAAACAGAATGATGACATGGTATAAGACAACTTTCAAAGCTCCCCTAGGAACTGAACCAGTCGTCGTGGACTTACACGGGTTGGGTAAGGGACATGCTTGGGTGAACGGGCATAGCATTGGGCGATATTGGCCAAGCTACTTGGCTCCAGAGGATGGTTGTAGTGTTGAAGCTTGTGACTACCGTGGTGCATACGACAATAACAAGTGTGTCTTCAACTGTGGCAAACCTACTCAAAGATGGTATCATGTTCCGCGATCCTTTTTGCAAGATGATGAGAACACATTGGTCTTGTTTGAGGAATTTGGTGGCAACCCATCTTATGTGAATTTCCAGACAATCAGAGTTGGAACTATTTGTGCAAATGCATATGAGAATCATACATTGGAATTGGCATGCCAAGGTCGCCCCATTTCAGCAATCAAATTTGCTAGCTTTGGAAAACCTGAAGGGACTTGTGGATCATTTAAGAATGGCACCTGTGATGGCACAACTGCTTTGTCCATCCTTCAAAAGGAATGTGTTGGAAAAGAGTCGTGCTCAATTGATGTATCAGAAAAGAAGTTCGGTTCCACAAATTGTGGCGATATTGTGAAGAGGCTGGCCGTGGAAGCAGTTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

332

Amino Acids

36.27

Weight (kDa)

7.03

Isoelectric Point (pI)

36.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BetaGal_gal-bd	PF21467	130 - 219	1.2e-25	Beta-galactosidase, galactose-binding domain
SUEL_Lectin	PF02140	257 - 332	9.9e-19	D-galactoside/L-rhamnose binding SUEL lectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31740 AT2G04060 AT5G20710 AT5G20710
fragaria_vesca	FvH4_1g09120 FvH4_1g09190 FvH4_1g09190 FvH4_1g26380
malus_domestica	MD02G1096400.v1.1 MD03G1276000.v1.1 MD15G1220900.v1.1 MD15G1221000.v1.1
prunus_persica	Prupe.7G194500_v2.0.a1
pyrus_communis	pycom02g07640
rosa_chinensis	RchiOBHm_Chr2g0095511 RchiOBHm_Chr2g0095591 RchiOBHm_Chr5g0030701
rosa_laevigata	RLG00000016574 RLG00000016582 RLG00000016583
rosa_multiflora	Rmu_co8462209.1_g000001 Rmu_sc0003238.1_g000025 Rmu_sc0003238.1_g000028 Rmu_sc0004719.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146240
rosa_rugosa	Rorug02G0051800 Rorug02G0052600 Rorug05G0120200
rosa_samantha	Rh2AG099800 Rh2AG100400 Rh2BG101100 Rh2BG102200 Rh2CG103300 Rh2CG104600 Rh2DG100700 Rh2DG101500 Rh5AG211800 Rh5BG210700 Rh5CG234400 Rh5CG234500 Rh5DG216100
rosa_wichuraiana	Rw2G007570 Rw2G007630 Rw2G007640 Rw5G019420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	851
AccB7I	CCANNNNNTGG	1 cut(s)	530
AccII	CGCG	1 cut(s)	631
AciI	CCGC	1 cut(s)	629
AclWI	GGATC	3 cut(s)	46, 627, 844
AcoI	YGGCCR	2 cut(s)	506, 978
AcsI	RAATTY	4 cut(s)	136, 677, 703, 800
AcuI	CTGAAG	1 cut(s)	843
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	2 cut(s)	530, 889
AgsI	TTSAA	8 cut(s)	136, 227, 313, 365, 412, 545, 592, 887
AjuI	GAANNNNNNNTTGG	2 cut(s)	743, 775
AluBI	AGCT	7 cut(s)	215, 322, 330, 416, 513, 548, 810
AluI	AGCT	7 cut(s)	215, 322, 330, 416, 513, 548, 810
Alw21I	GWGCWC	2 cut(s)	324, 917
AlwI	GGATC	3 cut(s)	46, 627, 844
AoxI	GGCC	2 cut(s)	506, 978
ApeKI	GCWGC	1 cut(s)	60
ApoI	RAATTY	4 cut(s)	136, 677, 703, 800
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
AspA2I	CCTAGG	1 cut(s)	421
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	100, 490
AsuNHI	GCTAGC	1 cut(s)	806
AvaII	GGWCC	1 cut(s)	218
AvrII	CCTAGG	1 cut(s)	421
BalI	TGGCCA	1 cut(s)	508
BanI	GGYRCC	1 cut(s)	851
BanII	GRGCYC	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	580
Bbv12I	GWGCWC	2 cut(s)	324, 917
BbvI	GCAGC	1 cut(s)	72
BccI	CCATC	8 cut(s)	89, 110, 113, 524, 609, 700, 854, 887
BceAI	ACGGC	1 cut(s)	965
BclI	TGATCA	1 cut(s)	258
BfaI	CTAG	2 cut(s)	422, 807
BfmI	CTRYAG	1 cut(s)	58
BisI	GCNGC	1 cut(s)	61
BlnI	CCTAGG	1 cut(s)	421
BlsI	GCNGC	1 cut(s)	62
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	4 cut(s)	145, 522, 853, 946
BmtI	GCTAGC	1 cut(s)	810
BpiI	GAAGAC	1 cut(s)	580
BplI	GAGNNNNNCTC	2 cut(s)	899, 931
BpmI	CTGGAG	2 cut(s)	228, 507
BsaJI	CCNNGG	5 cut(s)	304, 421, 559, 775, 981
Bsc4I	CCNNNNNNNGG	2 cut(s)	530, 889
Bse1I	ACTGG	3 cut(s)	211, 374, 434
BseDI	CCNNGG	5 cut(s)	304, 421, 559, 775, 981
BseGI	GGATG	2 cut(s)	535, 879
BseLI	CCNNNNNNNGG	2 cut(s)	530, 889
BseNI	ACTGG	3 cut(s)	211, 374, 434
BseXI	GCAGC	1 cut(s)	72
Bsh1236I	CGCG	1 cut(s)	631
BshFI	GGCC	2 cut(s)	508, 980
BshNI	GGYRCC	1 cut(s)	851
BsiHKAI	GWGCWC	2 cut(s)	324, 917
BslFI	GGGAC	2 cut(s)	480, 841
BslI	CCNNNNNNNGG	2 cut(s)	530, 889
BsmFI	GGGAC	2 cut(s)	480, 841
BsnI	GGCC	2 cut(s)	508, 980
Bsp1286I	GDGCHC	2 cut(s)	324, 917
Bsp143I	GATC	4 cut(s)	51, 258, 632, 836
Bsp19I	CCATGG	1 cut(s)	304
BspACI	CCGC	1 cut(s)	629
BspANI	GGCC	2 cut(s)	508, 980
BspFNI	CGCG	1 cut(s)	631
BspLI	GGNNCC	4 cut(s)	145, 522, 853, 946
BspMAI	CTGCAG	1 cut(s)	62
BspOI	GCTAGC	1 cut(s)	810
BspPI	GGATC	3 cut(s)	46, 627, 844
BspT107I	GGYRCC	1 cut(s)	851
BsrI	ACTGG	3 cut(s)	211, 374, 434
BssECI	CCNNGG	5 cut(s)	304, 421, 559, 775, 981
BssMI	GATC	4 cut(s)	51, 258, 632, 836
BssT1I	CCWWGG	3 cut(s)	304, 421, 775
Bst4CI	ACNGT	3 cut(s)	256, 560, 596
Bst6I	CTCTTC	1 cut(s)	965
BstC8I	GCNNGC	3 cut(s)	772, 808, 978
BstDSI	CCRYGG	3 cut(s)	304, 559, 981
BstENI	CCTNNNNNAGG	1 cut(s)	887
BstF5I	GGATG	2 cut(s)	535, 879
BstFNI	CGCG	1 cut(s)	631
BstKTI	GATC	4 cut(s)	54, 261, 635, 839
BstMBI	GATC	4 cut(s)	51, 258, 632, 836
BstMWI	GCNNNNNNNGC	3 cut(s)	505, 780, 986
BstNSI	RCATGY	2 cut(s)	473, 774
BstSFI	CTRYAG	1 cut(s)	58
BstUI	CGCG	1 cut(s)	631
BstV1I	GCAGC	1 cut(s)	72
BstV2I	GAAGAC	1 cut(s)	580
BsuRI	GGCC	2 cut(s)	508, 980
BtgI	CCRYGG	3 cut(s)	304, 559, 981
BtsCI	GGATG	2 cut(s)	535, 879
Cac8I	GCNNGC	3 cut(s)	772, 808, 978
Cfr13I	GGNCC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	5 cut(s)	305, 393, 470, 623, 771
CviQI	GTAC	1 cut(s)	165
DpnI	GATC	4 cut(s)	53, 260, 634, 838
DpnII	GATC	4 cut(s)	51, 258, 632, 836
EaeI	YGGCCR	2 cut(s)	506, 978
Eam1104I	CTCTTC	1 cut(s)	965
EarI	CTCTTC	1 cut(s)	965
Ecl136II	GAGCTC	1 cut(s)	322
Eco130I	CCWWGG	3 cut(s)	304, 421, 775
Eco24I	GRGCYC	1 cut(s)	324
Eco47I	GGWCC	1 cut(s)	218
Eco53kI	GAGCTC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	843
EcoICRI	GAGCTC	1 cut(s)	322
EcoNI	CCTNNNNNAGG	1 cut(s)	887
EcoRI	GAATTC	1 cut(s)	136
EcoT14I	CCWWGG	3 cut(s)	304, 421, 775
EcoT22I	ATGCAT	1 cut(s)	745
EcoT38I	GRGCYC	1 cut(s)	324
ErhI	CCWWGG	3 cut(s)	304, 421, 775
FaeI	CATG	5 cut(s)	308, 396, 473, 626, 774
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FaqI	GGGAC	2 cut(s)	480, 841
FatI	CATG	5 cut(s)	304, 392, 469, 622, 770
FauNDI	CATATG	1 cut(s)	745
FbaI	TGATCA	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	61
FokI	GGATG	2 cut(s)	542, 866
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	1 cut(s)	61
FspBI	CTAG	2 cut(s)	422, 807
GluI	GCNGC	1 cut(s)	61
GsuI	CTGGAG	2 cut(s)	228, 507
HaeIII	GGCC	2 cut(s)	508, 980
Hin1II	CATG	5 cut(s)	308, 396, 473, 626, 774
HindIII	AAGCTT	1 cut(s)	546
HinfI	GANTC	3 cut(s)	300, 751, 908
HphI	GGTGA	2 cut(s)	100, 490
Hpy166II	GTNNAC	5 cut(s)	167, 371, 379, 445, 481
Hpy188I	TCNGA	3 cut(s)	274, 719, 931
Hpy188III	TCNNGA	2 cut(s)	524, 709
Hpy8I	GTNNAC	5 cut(s)	167, 371, 379, 445, 481
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	4 cut(s)	120, 359, 818, 893
HpyCH4III	ACNGT	3 cut(s)	256, 560, 596
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	6 cut(s)	60, 347, 566, 643, 737, 743
HpyF10VI	GCNNNNNNNGC	3 cut(s)	505, 780, 986
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	5 cut(s)	308, 396, 473, 626, 774
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	4 cut(s)	51, 258, 632, 836
LmnI	GCTCC	2 cut(s)	421, 526
Lsp1109I	GCAGC	1 cut(s)	72
MaeI	CTAG	2 cut(s)	422, 807
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	551
MalI	GATC	4 cut(s)	53, 260, 634, 838
MboI	GATC	4 cut(s)	51, 258, 632, 836
MboII	GAAGA	2 cut(s)	580, 982
MfeI	CAATTG	2 cut(s)	227, 918
MhlI	GDGCHC	2 cut(s)	324, 917
MlsI	TGGCCA	1 cut(s)	508
MluCI	AATT	9 cut(s)	136, 175, 227, 677, 703, 764, 800, 918, 952
MluNI	TGGCCA	1 cut(s)	508
MlyI	GAGTC	2 cut(s)	294, 917
MmeI	TCCRAC	4 cut(s)	214, 277, 703, 880
MnlI	CCTC	8 cut(s)	65, 74, 168, 176, 187, 520, 667, 966
Mox20I	TGGCCA	1 cut(s)	508
Mph1103I	ATGCAT	1 cut(s)	745
MscI	TGGCCA	1 cut(s)	508
MseI	TTAA	1 cut(s)	843
Msp20I	TGGCCA	1 cut(s)	508
MunI	CAATTG	2 cut(s)	227, 918
MvnI	CGCG	1 cut(s)	631
MwoI	GCNNNNNNNGC	3 cut(s)	505, 780, 986
NcoI	CCATGG	1 cut(s)	304
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	4 cut(s)	51, 258, 632, 836
NheI	GCTAGC	1 cut(s)	806
NlaIII	CATG	5 cut(s)	308, 396, 473, 626, 774
NlaIV	GGNNCC	4 cut(s)	145, 522, 853, 946
NmuCI	GTSAC	1 cut(s)	551
NsiI	ATGCAT	1 cut(s)	745
NspI	RCATGY	2 cut(s)	473, 774
PaeI	GCATGC	1 cut(s)	774
PfeI	GAWTC	1 cut(s)	751
PflMI	CCANNNNNTGG	1 cut(s)	530
PkrI	GCNGC	1 cut(s)	62
PleI	GAGTC	2 cut(s)	294, 916
PpsI	GAGTC	2 cut(s)	294, 916
Psp124BI	GAGCTC	1 cut(s)	324
PspN4I	GGNNCC	4 cut(s)	145, 522, 853, 946
PspPI	GGNCC	1 cut(s)	218
PstI	CTGCAG	1 cut(s)	62
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SacI	GAGCTC	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	843
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	4 cut(s)	51, 258, 632, 836
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	2 cut(s)	294, 917
SduI	GDGCHC	2 cut(s)	324, 917
SfcI	CTRYAG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	218
SphI	GCATGC	1 cut(s)	774
Sse9I	AATT	9 cut(s)	136, 175, 227, 677, 703, 764, 800, 918, 952
SsiI	CCGC	1 cut(s)	629
SspMI	CTAG	2 cut(s)	422, 807
SstI	GAGCTC	1 cut(s)	324
StyI	CCWWGG	3 cut(s)	304, 421, 775
TaaI	ACNGT	3 cut(s)	256, 560, 596
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	1 cut(s)	160
TasI	AATT	9 cut(s)	136, 175, 227, 677, 703, 764, 800, 918, 952
TatI	WGTACW	1 cut(s)	164
TfiI	GAWTC	1 cut(s)	751
Tru1I	TTAA	1 cut(s)	843
Tru9I	TTAA	1 cut(s)	843
TseFI	GTSAC	1 cut(s)	551
TseI	GCWGC	1 cut(s)	60
Tsp45I	GTSAC	1 cut(s)	551
TspDTI	ATGAA	1 cut(s)	264
Van91I	CCANNNNNTGG	1 cut(s)	530
VpaK11BI	GGWCC	1 cut(s)	218
XagI	CCTNNNNNAGG	1 cut(s)	887
XapI	RAATTY	4 cut(s)	136, 677, 703, 800
XceI	RCATGY	2 cut(s)	473, 774
XmaJI	CCTAGG	1 cut(s)	421
XspI	CTAG	2 cut(s)	422, 807
Zsp2I	ATGCAT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.