Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8462209.1

Orthogroup ID

OG0001959

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1646

Gene Structure 1646 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8462209.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atgcagatgtggccagacttgattaggaagtcaaaggaaggtggactcgatgcaattgagacttatgtcttctggaatgcgcatgaaccagttcgtcgtgaatacgattttactggtaatcttgacctggttaggtttatcaaaacgattcaagatgaaggactttatgctgttcttcggattggtccatatgtttgtgctgaatggaattatggaggacttcctgtttggctccataacctgccaaactgtcaaattcgaacagcaaacgatgttttcatgattgaaaatgaatatgggaatgtggaatcatactatggagatgctggaaaagcatacattaactggtctgcaaactttgctgaatcactaaacatcggagttccatggattatgtgtcaacaaaaagatgctcccgcatcaatgccaagtaaccccaacactcctaagatgtggactgaaaattggactggctggttcaagagctggggtggtttagacccactcaggactgctgaggacgttgcctttgcagtagcaaggtttttccaatatggaggcacatttcaaaactattacatgtatcatggtggaacaaactttggtagaacagcagcttcatacattaccacctcgtatgattatgatgcccctcttgatgagtatggccatctgagtcaaccaaaatgggggcatttgaaagagcttcatgaggttttgaaatccatggaatatactctcacctatggcaatattaccaccacagaattgggtaactctgtctca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

262

Amino Acids

30.03

Weight (kDa)

4.95

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31740 AT2G04060 AT5G20710 AT5G20710
fragaria_vesca	FvH4_1g09120 FvH4_1g09190 FvH4_1g09190 FvH4_1g26380
malus_domestica	MD02G1096400.v1.1 MD03G1276000.v1.1 MD15G1220900.v1.1 MD15G1221000.v1.1
prunus_persica	Prupe.7G194500_v2.0.a1
pyrus_communis	pycom02g07640
rosa_chinensis	RchiOBHm_Chr2g0095511 RchiOBHm_Chr2g0095591 RchiOBHm_Chr5g0030701
rosa_laevigata	RLG00000016574 RLG00000016582 RLG00000016583
rosa_multiflora	Rmu_co8462209.1_g000001 Rmu_sc0003238.1_g000025 Rmu_sc0003238.1_g000028 Rmu_sc0004719.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146240
rosa_rugosa	Rorug02G0051800 Rorug02G0052600 Rorug05G0120200
rosa_samantha	Rh2AG099800 Rh2AG100400 Rh2BG101100 Rh2BG102200 Rh2CG103300 Rh2CG104600 Rh2DG100700 Rh2DG101500 Rh5AG211800 Rh5BG210700 Rh5CG234400 Rh5CG234500 Rh5DG216100
rosa_wichuraiana	Rw2G007570 Rw2G007630 Rw2G007640 Rw5G019420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	81
Acc36I	ACCTGC	1 cut(s)	249
AciI	CCGC	1 cut(s)	417
AcoI	YGGCCR	2 cut(s)	11, 667
AcsI	RAATTY	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	689
AflIII	ACRYGT	1 cut(s)	579
AgsI	TTSAA	6 cut(s)	152, 287, 481, 569, 700, 721
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	3 cut(s)	486, 617, 706
AluI	AGCT	3 cut(s)	486, 617, 706
Alw26I	GTCTC	1 cut(s)	53
AoxI	GGCC	2 cut(s)	11, 667
ApeKI	GCWGC	1 cut(s)	614
ApoI	RAATTY	1 cut(s)	255
ArsI	GACNNNNNNTTYG	4 cut(s)	210, 242, 512, 544
Asp700I	GAANNNNTTC	1 cut(s)	90
AspLEI	GCGC	1 cut(s)	82
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	733
AsuII	TTCGAA	1 cut(s)	259
AvaII	GGWCC	1 cut(s)	185
BalI	TGGCCA	2 cut(s)	13, 669
BbsI	GAAGAC	1 cut(s)	61
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	1 cut(s)	626
BccI	CCATC	1 cut(s)	678
BciT130I	CCWGG	1 cut(s)	128
BcoDI	GTCTC	1 cut(s)	53
BfuAI	ACCTGC	1 cut(s)	249
BisI	GCNGC	1 cut(s)	615
BlsI	GCNGC	1 cut(s)	616
Bme1390I	CCNGG	1 cut(s)	128
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	5 cut(s)	40, 313, 400, 428, 637
BoxI	GACNNNNGTC	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	61
Bpu10I	CCTNAGC	1 cut(s)	516
Bpu14I	TTCGAA	1 cut(s)	259
BsaJI	CCNNGG	2 cut(s)	386, 726
Bsc4I	CCNNNNNNNGG	1 cut(s)	689
Bse1I	ACTGG	4 cut(s)	89, 118, 350, 475
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	386, 726
BseLI	CCNNNNNNNGG	1 cut(s)	689
BseMII	CTCAG	3 cut(s)	507, 520, 665
BseNI	ACTGG	4 cut(s)	89, 118, 350, 475
BseXI	GCAGC	1 cut(s)	626
BseYI	CCCAGC	1 cut(s)	486
BshFI	GGCC	2 cut(s)	13, 669
BslI	CCNNNNNNNGG	1 cut(s)	689
BsmAI	GTCTC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	82
BsnI	GGCC	2 cut(s)	13, 669
Bsp119I	TTCGAA	1 cut(s)	259
Bsp19I	CCATGG	2 cut(s)	386, 726
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	2 cut(s)	13, 669
BspCNI	CTCAG	3 cut(s)	508, 519, 666
BspHI	TCATGA	2 cut(s)	279, 709
BspLI	GGNNCC	1 cut(s)	233
BspMI	ACCTGC	1 cut(s)	249
BspT104I	TTCGAA	1 cut(s)	259
BsrI	ACTGG	4 cut(s)	89, 118, 350, 475
BssECI	CCNNGG	2 cut(s)	386, 726
BssT1I	CCWWGG	2 cut(s)	386, 726
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstBI	TTCGAA	1 cut(s)	259
BstDEI	CTNAG	4 cut(s)	447, 506, 516, 674
BstDSI	CCRYGG	2 cut(s)	386, 726
BstHHI	GCGC	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 332, 359
BstNI	CCWGG	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	583
BstPAI	GACNNNNGTC	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	626
BstV2I	GAAGAC	1 cut(s)	61
BstXI	CCANNNNNNTGG	1 cut(s)	769
BsuRI	GGCC	2 cut(s)	13, 669
BtgI	CCRYGG	2 cut(s)	386, 726
BveI	ACCTGC	1 cut(s)	249
CciI	TCATGA	2 cut(s)	279, 709
CfoI	GCGC	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	185
CsiI	ACCWGGT	1 cut(s)	126
CviAII	CATG	7 cut(s)	83, 280, 387, 580, 587, 710, 727
CviJI	RGCY	7 cut(s)	13, 232, 474, 486, 617, 669, 706
CviKI_1	RGCY	7 cut(s)	13, 232, 474, 486, 617, 669, 706
DdeI	CTNAG	4 cut(s)	447, 506, 516, 674
EaeI	YGGCCR	2 cut(s)	11, 667
Eco130I	CCWWGG	2 cut(s)	386, 726
Eco47I	GGWCC	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	126
EcoT14I	CCWWGG	2 cut(s)	386, 726
ErhI	CCWWGG	2 cut(s)	386, 726
FaeI	CATG	7 cut(s)	86, 283, 390, 583, 590, 713, 730
FatI	CATG	7 cut(s)	82, 279, 386, 579, 586, 709, 726
FauI	CCCGC	1 cut(s)	424
FauNDI	CATATG	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	615
Fsp4HI	GCNGC	1 cut(s)	615
FspAI	RTGCGCAY	1 cut(s)	81
FspI	TGCGCA	1 cut(s)	81
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	1 cut(s)	615
GsaI	CCCAGC	1 cut(s)	490
HaeIII	GGCC	2 cut(s)	13, 669
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	7 cut(s)	86, 283, 390, 583, 590, 713, 730
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HincII	GTYRAC	2 cut(s)	401, 680
HindII	GTYRAC	2 cut(s)	401, 680
HinfI	GANTC	5 cut(s)	45, 148, 308, 365, 676
HphI	GGTGA	1 cut(s)	733
Hpy166II	GTNNAC	4 cut(s)	44, 401, 456, 680
Hpy188I	TCNGA	3 cut(s)	180, 380, 675
Hpy188III	TCNNGA	9 cut(s)	73, 98, 122, 152, 280, 481, 508, 656, 710
Hpy8I	GTNNAC	4 cut(s)	44, 401, 456, 680
Hpy99I	CGWCG	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	32, 152
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	4 cut(s)	4, 53, 353, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 332, 359
HpyF3I	CTNAG	4 cut(s)	447, 506, 516, 674
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	7 cut(s)	86, 283, 390, 583, 590, 713, 730
HspAI	GCGC	1 cut(s)	80
LmnI	GCTCC	2 cut(s)	237, 418
Lsp1109I	GCAGC	1 cut(s)	626
LweI	GCATC	5 cut(s)	40, 313, 400, 428, 637
MabI	ACCWGGT	1 cut(s)	126
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	2 cut(s)	431, 773
MboII	GAAGA	2 cut(s)	61, 167
MfeI	CAATTG	1 cut(s)	54
MlsI	TGGCCA	2 cut(s)	13, 669
MluCI	AATT	5 cut(s)	54, 208, 255, 463, 767
MluNI	TGGCCA	2 cut(s)	13, 669
MlyI	GAGTC	2 cut(s)	39, 685
MnlI	CCTC	6 cut(s)	209, 511, 551, 643, 663, 706
Mox20I	TGGCCA	2 cut(s)	13, 669
MroXI	GAANNNNTTC	1 cut(s)	90
MscI	TGGCCA	2 cut(s)	13, 669
MseI	TTAA	1 cut(s)	342
Msp20I	TGGCCA	2 cut(s)	13, 669
MspR9I	CCNGG	1 cut(s)	128
MunI	CAATTG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	3 cut(s)	10, 332, 359
NcoI	CCATGG	2 cut(s)	386, 726
NdeI	CATATG	1 cut(s)	190
NlaIII	CATG	7 cut(s)	86, 283, 390, 583, 590, 713, 730
NlaIV	GGNNCC	1 cut(s)	233
NsbI	TGCGCA	1 cut(s)	81
NspI	RCATGY	1 cut(s)	583
NspV	TTCGAA	1 cut(s)	259
PagI	TCATGA	2 cut(s)	279, 709
PciI	ACATGT	1 cut(s)	579
PctI	GAATGC	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	148, 308, 365
PkrI	GCNGC	1 cut(s)	616
PleI	GAGTC	2 cut(s)	39, 684
PpsI	GAGTC	2 cut(s)	39, 684
PscI	ACATGT	1 cut(s)	579
PshAI	GACNNNNGTC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	486
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	1 cut(s)	185
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	615
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	2 cut(s)	39, 685
ScrFI	CCNGG	1 cut(s)	128
SexAI	ACCWGGT	1 cut(s)	126
SfaNI	GCATC	5 cut(s)	40, 313, 400, 428, 637
SfuI	TTCGAA	1 cut(s)	259
SinI	GGWCC	1 cut(s)	185
Sse9I	AATT	5 cut(s)	54, 208, 255, 463, 767
SsiI	CCGC	1 cut(s)	417
SspI	AATATT	1 cut(s)	754
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	2 cut(s)	386, 726
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	2 cut(s)	48, 259
TasI	AATT	5 cut(s)	54, 208, 255, 463, 767
TfiI	GAWTC	3 cut(s)	148, 308, 365
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseI	GCWGC	1 cut(s)	614
TspDTI	ATGAA	6 cut(s)	99, 171, 268, 306, 609, 698
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	255
XceI	RCATGY	1 cut(s)	583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	766
XmnI	GAANNNNTTC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.