Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004719.1

Orthogroup ID

OG0001959

Physical Location & Seq

Genomic Coordinates Reverse (-)

32096 .. 33258

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004719.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgcttattaattgcttgtataagggttttaatcaaacttcgattaatcatgtccagaactacggaggtggatatgatttgcaacctgctggaatacttggtcctgttgttttgattggacagaatggtgatgaaactgtgatcaaggatttgtcagcacacaaatggtcatacaaggttggattacatggcttgacaaacaagctatttagctccgagaaagcaacgaaatggtcgtctgaaaatttaccagtaaacacgatgatgacatggtacaagacaactttcaaagctcctgtaggaactgaccccgttgtggtggatttacaagggttggggaagggtgatgcttgggtgaatggtcatagtattggtcgatattggccaagttacttggctaagaccgacggttgtagtgatgcttgcgactatcgtggtaaatatgagagtaaaaaatgtacttccaactgtggcgaacctactcaaagatggtatcacgttccgcgatctttcatgcgagacgatgatgagaacacgttgatcttgttcgaagaatttggtggcaatccatctcttgtaaatttccaaaccatcacagtcggaagtgtttgtgcgaattcatatgataagaataccttggaattggcatgccaaggtcgccctatttcagcaatcaaatttgctagttttggcaaccctcaaggtacttgtggatcattcaagaaaggcacctgtgatggcgcaaatgcactgtccatcattgaaaaggaatgcatcggtaaagaaaaatgctcgatcaacatctccaacgacaaatttgacacaacaaattgtggagatattgtgaaaaggcttgcagtggaggccgtttgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BetaGal_dom4_5 Gal_Lectin Glyco_hydro_35

Protein Analysis

291

Amino Acids

31.85

Weight (kDa)

6.92

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001959)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31740 AT2G04060 AT5G20710 AT5G20710
fragaria_vesca	FvH4_1g09120 FvH4_1g09190 FvH4_1g09190 FvH4_1g26380
malus_domestica	MD02G1096400.v1.1 MD03G1276000.v1.1 MD15G1220900.v1.1 MD15G1221000.v1.1
prunus_persica	Prupe.7G194500_v2.0.a1
pyrus_communis	pycom02g07640
rosa_chinensis	RchiOBHm_Chr2g0095511 RchiOBHm_Chr2g0095591 RchiOBHm_Chr5g0030701
rosa_laevigata	RLG00000016574 RLG00000016582 RLG00000016583
rosa_multiflora	Rmu_co8462209.1_g000001 Rmu_sc0003238.1_g000025 Rmu_sc0003238.1_g000028 Rmu_sc0004719.1_g000009
rosa_roxburghii	Rroxscaffold_2G00146240
rosa_rugosa	Rorug02G0051800 Rorug02G0052600 Rorug05G0120200
rosa_samantha	Rh2AG099800 Rh2AG100400 Rh2BG101100 Rh2BG102200 Rh2CG103300 Rh2CG104600 Rh2DG100700 Rh2DG101500 Rh5AG211800 Rh5BG210700 Rh5CG234400 Rh5CG234500 Rh5DG216100
rosa_wichuraiana	Rw2G007570 Rw2G007630 Rw2G007640 Rw5G019420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	94
AccB1I	GGYRCC	1 cut(s)	728
AccII	CGCG	1 cut(s)	505
AciI	CCGC	1 cut(s)	503
AclWI	GGATC	1 cut(s)	721
AcoI	YGGCCR	1 cut(s)	383
AcsI	RAATTY	6 cut(s)	244, 554, 580, 616, 677, 815
AfaI	GTAC	3 cut(s)	275, 460, 706
AfiI	CCNNNNNNNGG	1 cut(s)	316
AflIII	ACRYGT	1 cut(s)	534
AgsI	TTSAA	3 cut(s)	289, 721, 764
AluBI	AGCT	3 cut(s)	205, 213, 293
AluI	AGCT	3 cut(s)	205, 213, 293
Alw26I	GTCTC	1 cut(s)	513
AlwI	GGATC	1 cut(s)	721
AoxI	GGCC	2 cut(s)	383, 864
ApoI	RAATTY	6 cut(s)	244, 554, 580, 616, 677, 815
ArsI	GACNNNNNNTTYG	4 cut(s)	221, 253, 737, 769
AseI	ATTAAT	2 cut(s)	9, 45
AspLEI	GCGC	1 cut(s)	743
AspS9I	GGNCC	1 cut(s)	101
AsuHPI	GGTGA	3 cut(s)	140, 356, 367
AsuII	TTCGAA	1 cut(s)	549
AvaII	GGWCC	1 cut(s)	101
BalI	TGGCCA	1 cut(s)	385
BanI	GGYRCC	1 cut(s)	728
BccI	CCATC	5 cut(s)	483, 577, 599, 731, 764
BceAI	ACGGC	1 cut(s)	851
BclI	TGATCA	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	513
BfaI	CTAG	1 cut(s)	684
BfmI	CTRYAG	1 cut(s)	297
BfuAI	ACCTGC	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	730
BmsI	GCATC	3 cut(s)	337, 409, 783
Bpu14I	TTCGAA	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	684
BsaBI	GATNNNNATC	1 cut(s)	800
BsaJI	CCNNGG	2 cut(s)	636, 652
BsaXI	ACNNNNNCTCC	2 cut(s)	828, 858
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse1I	ACTGG	1 cut(s)	251
Bse8I	GATNNNNATC	1 cut(s)	800
BseDI	CCNNGG	2 cut(s)	636, 652
BseJI	GATNNNNATC	1 cut(s)	800
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseNI	ACTGG	1 cut(s)	251
Bsh1236I	CGCG	1 cut(s)	505
BshFI	GGCC	2 cut(s)	385, 866
BshNI	GGYRCC	1 cut(s)	728
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	513
BsmBI	CGTCTC	1 cut(s)	513
BsmI	GAATGC	1 cut(s)	776
BsnI	GGCC	2 cut(s)	385, 866
Bsp119I	TTCGAA	1 cut(s)	549
Bsp143I	GATC	5 cut(s)	141, 506, 540, 713, 795
BspACI	CCGC	1 cut(s)	503
BspANI	GGCC	2 cut(s)	385, 866
BspFNI	CGCG	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	730
BspMI	ACCTGC	1 cut(s)	94
BspPI	GGATC	1 cut(s)	721
BspT104I	TTCGAA	1 cut(s)	549
BspT107I	GGYRCC	1 cut(s)	728
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	2 cut(s)	636, 652
BssMI	GATC	5 cut(s)	141, 506, 540, 713, 795
BssT1I	CCWWGG	2 cut(s)	636, 652
Bst4CI	ACNGT	5 cut(s)	139, 410, 470, 598, 753
BstBI	TTCGAA	1 cut(s)	549
BstC8I	GCNNGC	3 cut(s)	424, 649, 855
BstDEI	CTNAG	1 cut(s)	399
BstFNI	CGCG	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	743
BstKTI	GATC	5 cut(s)	144, 509, 543, 716, 798
BstMAI	GTCTC	1 cut(s)	513
BstMBI	GATC	5 cut(s)	141, 506, 540, 713, 795
BstMWI	GCNNNNNNNGC	2 cut(s)	657, 863
BstNSI	RCATGY	1 cut(s)	651
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	505
BsuRI	GGCC	2 cut(s)	385, 866
BtsI	GCAGTG	1 cut(s)	864
BtsIMutI	CAGTG	2 cut(s)	749, 864
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	3 cut(s)	424, 649, 855
CfoI	GCGC	1 cut(s)	743
Cfr13I	GGNCC	1 cut(s)	101
Csp6I	GTAC	3 cut(s)	274, 459, 705
CviAII	CATG	5 cut(s)	50, 188, 270, 514, 648
CviJI	RGCY	8 cut(s)	192, 205, 213, 293, 385, 398, 853, 866
CviKI_1	RGCY	8 cut(s)	192, 205, 213, 293, 385, 398, 853, 866
CviQI	GTAC	3 cut(s)	274, 459, 705
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	5 cut(s)	143, 508, 542, 715, 797
DpnII	GATC	5 cut(s)	141, 506, 540, 713, 795
EaeI	YGGCCR	1 cut(s)	383
Eco130I	CCWWGG	2 cut(s)	636, 652
Eco47I	GGWCC	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	616
EcoT14I	CCWWGG	2 cut(s)	636, 652
EcoT22I	ATGCAT	1 cut(s)	776
ErhI	CCWWGG	2 cut(s)	636, 652
Esp3I	CGTCTC	1 cut(s)	513
FaeI	CATG	5 cut(s)	53, 191, 273, 517, 651
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FatI	CATG	5 cut(s)	49, 187, 269, 513, 647
FauNDI	CATATG	1 cut(s)	622
FbaI	TGATCA	1 cut(s)	141
FspBI	CTAG	1 cut(s)	684
GlaI	GCGC	1 cut(s)	742
HaeIII	GGCC	2 cut(s)	385, 866
HhaI	GCGC	1 cut(s)	743
Hin1II	CATG	5 cut(s)	53, 191, 273, 517, 651
Hin6I	GCGC	1 cut(s)	741
HinP1I	GCGC	1 cut(s)	741
HphI	GGTGA	3 cut(s)	140, 356, 367
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	217, 241, 602
Hpy188III	TCNNGA	2 cut(s)	55, 721
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	1 cut(s)	334
HpyCH4III	ACNGT	5 cut(s)	139, 410, 470, 598, 753
HpyCH4IV	ACGT	2 cut(s)	498, 536
HpyCH4V	TGCA	4 cut(s)	82, 749, 774, 857
HpyF10VI	GCNNNNNNNGC	2 cut(s)	657, 863
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	2 cut(s)	498, 536
Hsp92II	CATG	5 cut(s)	53, 191, 273, 517, 651
HspAI	GCGC	1 cut(s)	741
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	5 cut(s)	141, 506, 540, 713, 795
LmnI	GCTCC	2 cut(s)	218, 298
LpnPI	CCDG	7 cut(s)	68, 75, 99, 117, 264, 309, 745
LweI	GCATC	3 cut(s)	337, 409, 783
MaeI	CTAG	1 cut(s)	684
MaeII	ACGT	2 cut(s)	498, 536
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	5 cut(s)	143, 508, 542, 715, 797
MboI	GATC	5 cut(s)	141, 506, 540, 713, 795
MboII	GAAGA	1 cut(s)	563
MlsI	TGGCCA	1 cut(s)	385
MluCI	AATT	9 cut(s)	10, 244, 554, 580, 616, 641, 677, 815, 829
MluNI	TGGCCA	1 cut(s)	385
MmeI	TCCRAC	4 cut(s)	160, 489, 580, 831
MnlI	CCTC	3 cut(s)	59, 708, 856
Mox20I	TGGCCA	1 cut(s)	385
Mph1103I	ATGCAT	1 cut(s)	776
MscI	TGGCCA	1 cut(s)	385
MseI	TTAA	4 cut(s)	9, 30, 45, 874
MslI	CAYNNNNRTG	2 cut(s)	163, 263
Msp20I	TGGCCA	1 cut(s)	385
Mva1269I	GAATGC	1 cut(s)	776
MvnI	CGCG	1 cut(s)	505
MwoI	GCNNNNNNNGC	2 cut(s)	657, 863
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	5 cut(s)	141, 506, 540, 713, 795
NlaIII	CATG	5 cut(s)	53, 191, 273, 517, 651
NlaIV	GGNNCC	1 cut(s)	730
NsiI	ATGCAT	1 cut(s)	776
NspI	RCATGY	1 cut(s)	651
NspV	TTCGAA	1 cut(s)	549
PaeI	GCATGC	1 cut(s)	651
PcsI	WCGNNNNNNNCGW	1 cut(s)	233
PctI	GAATGC	1 cut(s)	776
PshBI	ATTAAT	2 cut(s)	9, 45
PspN4I	GGNNCC	1 cut(s)	730
PspPI	GGNCC	1 cut(s)	101
RsaI	GTAC	3 cut(s)	275, 460, 706
RsaNI	GTAC	3 cut(s)	274, 459, 705
RseI	CAYNNNNRTG	2 cut(s)	163, 263
SaqAI	TTAA	4 cut(s)	9, 30, 45, 874
Sau3AI	GATC	5 cut(s)	141, 506, 540, 713, 795
Sau96I	GGNCC	1 cut(s)	101
SfaNI	GCATC	3 cut(s)	337, 409, 783
SfcI	CTRYAG	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	549
SinI	GGWCC	1 cut(s)	101
SmiMI	CAYNNNNRTG	2 cut(s)	163, 263
SmlI	CTYRAG	1 cut(s)	699
SmoI	CTYRAG	1 cut(s)	699
SphI	GCATGC	1 cut(s)	651
Sse9I	AATT	9 cut(s)	10, 244, 554, 580, 616, 641, 677, 815, 829
SsiI	CCGC	1 cut(s)	503
SspMI	CTAG	1 cut(s)	684
StyI	CCWWGG	2 cut(s)	636, 652
TaaI	ACNGT	5 cut(s)	139, 410, 470, 598, 753
TaiI	ACGT	2 cut(s)	501, 539
TaqI	TCGA	4 cut(s)	41, 376, 549, 794
TaqII	GACCGA	1 cut(s)	419
TasI	AATT	9 cut(s)	10, 244, 554, 580, 616, 641, 677, 815, 829
TatI	WGTACW	1 cut(s)	458
Tru1I	TTAA	4 cut(s)	9, 30, 45, 874
Tru9I	TTAA	4 cut(s)	9, 30, 45, 874
TscAI	CASTG	2 cut(s)	756, 864
TspDTI	ATGAA	3 cut(s)	147, 502, 609
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	2 cut(s)	756, 864
VpaK11BI	GGWCC	1 cut(s)	101
VspI	ATTAAT	2 cut(s)	9, 45
XapI	RAATTY	6 cut(s)	244, 554, 580, 616, 677, 815
XceI	RCATGY	1 cut(s)	651
XspI	CTAG	1 cut(s)	684
Zsp2I	ATGCAT	1 cut(s)	776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.