Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004872

Physical Location & Seq

Genomic Coordinates Forward (+)

29121487 .. 29123499

Gene Structure 2013 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1205200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAAGTCAAGCTCACTACGAATTCCTCGAGTGAACGTTTTGTATTGGAAAGAAGTACCTGATGAGTTGTCTGAGCAAAAGAGACTTTACAATGAAGTGATTGAGCTTAAAGGCAACATCCGAGTTTTCTGCAGATTTAGACCTTTGAATCAAACTGAAATTTCAAGCGGATCAGGTTCCGTTGTTGGATTGGAATCCTCCCTAGACAGTGGGTTGCAGGTCATTTGTTCTGACTCCTCTAAAAAGCAGTTCAAGTTTGACCATGTCTTCGGACCTGAGGGCAACCAAGTTTTCGCTCAAACGAAACCTATTGTGAGTTCGGTGTTGGATGGCTACAATGTCTGTATTTTTGCCTATGGAAACTGGAACTGGCAAGACCTTTACGATGGAGGGTACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005871 GO:0005875 GO:0006928 GO:0007017 GO:0007018 GO:0008150 GO:0009987 GO:0015630 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin Microtub_bd

Protein Analysis

134

Amino Acids

15.04

Weight (kDa)

5.81

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Microtub_bd	PF16796	22 - 121	5.3e-21	Microtubule binding
Kinesin	PF00225	45 - 121	1.2e-13	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004872)

Species	Orthologous Gene IDs
malus_domestica	MD04G1205200.v1.1
pyrus_communis	pycom03g16180 pycom04g18130
rosa_chinensis	RchiOBHm_Chr2g0147251
rosa_laevigata	RLG00000001747 RLG00000011422 RLG00000027814
rosa_multiflora	Rmu_sc0000239.1_g000021 Rmu_sc0000281.1_g000007 Rmu_sc0012870.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042640 Rroxscaffold_2G00137820 Rroxscaffold_3G00246700 Rroxscaffold_4G00310320 Rroxscaffold_5G00348420
rosa_rugosa	Rorug01G0187600 Rorug03G0334800 Rorug05G0314300 Rorug05G0314400 Rorug05G0314500 Rorug05G0314600 Rorug06G0126800
rosa_samantha	Rh1CG247300 Rh1DG034400 Rh4CG158400 Rh5AG257400 Rh5AG425700 Rh5BG372700 Rh5BG554500 Rh5BG555000 Rh5CG577300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	208
AciI	CCGC	1 cut(s)	168
AclI	AACGTT	1 cut(s)	36
AclWI	GGATC	1 cut(s)	178
AcsI	RAATTY	2 cut(s)	21, 159
AfaI	GTAC	2 cut(s)	57, 395
AgsI	TTSAA	3 cut(s)	148, 165, 253
AluBI	AGCT	2 cut(s)	12, 106
AluI	AGCT	2 cut(s)	12, 106
Alw26I	GTCTC	1 cut(s)	76
AlwI	GGATC	1 cut(s)	178
Ama87I	CYCGRG	1 cut(s)	27
ApoI	RAATTY	2 cut(s)	21, 159
ArsI	GACNNNNNNTTYG	2 cut(s)	251, 283
AspS9I	GGNCC	1 cut(s)	272
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	272
AxyI	CCTNAGG	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	259
BccI	CCATC	2 cut(s)	323, 380
BcgI	CGANNNNNNTGC	2 cut(s)	111, 145
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	130
BfuAI	ACCTGC	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	272
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	259
BsaBI	GATNNNNATC	1 cut(s)	193
Bse1I	ACTGG	2 cut(s)	368, 374
Bse21I	CCTNAGG	1 cut(s)	276
Bse8I	GATNNNNATC	1 cut(s)	193
BseGI	GGATG	2 cut(s)	117, 334
BseJI	GATNNNNATC	1 cut(s)	193
BseMII	CTCAG	2 cut(s)	63, 267
BseNI	ACTGG	2 cut(s)	368, 374
BseRI	GAGGAG	1 cut(s)	226
BsiHKCI	CYCGRG	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	27
Bsp143I	GATC	1 cut(s)	170
BspACI	CCGC	1 cut(s)	168
BspCNI	CTCAG	2 cut(s)	64, 268
BspLI	GGNNCC	1 cut(s)	178
BspMAI	CTGCAG	1 cut(s)	134
BspMI	ACCTGC	1 cut(s)	208
BspPI	GGATC	1 cut(s)	178
BsrI	ACTGG	2 cut(s)	368, 374
BssMI	GATC	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	209
BstDEI	CTNAG	2 cut(s)	72, 276
BstF5I	GGATG	2 cut(s)	117, 334
BstKTI	GATC	1 cut(s)	173
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	170
BstSFI	CTRYAG	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	259
Bsu36I	CCTNAGG	1 cut(s)	276
BtsCI	GGATG	2 cut(s)	117, 334
BtsIMutI	CAGTG	1 cut(s)	214
BveI	ACCTGC	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	56, 394
CviAII	CATG	1 cut(s)	263
CviJI	RGCY	3 cut(s)	12, 106, 333
CviKI_1	RGCY	3 cut(s)	12, 106, 333
CviQI	GTAC	2 cut(s)	56, 394
DdeI	CTNAG	2 cut(s)	72, 276
DpnI	GATC	1 cut(s)	172
DpnII	GATC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	272
Eco81I	CCTNAGG	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	27
EcoRI	GAATTC	1 cut(s)	21
FaeI	CATG	1 cut(s)	266
FaiI	YATR	2 cut(s)	264, 357
FatI	CATG	1 cut(s)	262
FokI	GGATG	2 cut(s)	104, 341
FspBI	CTAG	1 cut(s)	203
Hin1II	CATG	1 cut(s)	266
HinfI	GANTC	3 cut(s)	148, 194, 233
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	4 cut(s)	73, 122, 232, 272
Hpy8I	GTNNAC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	2 cut(s)	132, 217
HpyF3I	CTNAG	2 cut(s)	72, 276
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	266
Kzo9I	GATC	1 cut(s)	170
LpnPI	CCDG	6 cut(s)	72, 159, 203, 288, 349, 355
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	36
MalI	GATC	1 cut(s)	172
MboI	GATC	1 cut(s)	170
MboII	GAAGA	1 cut(s)	259
MluCI	AATT	2 cut(s)	21, 159
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	2 cut(s)	166, 306
MnlI	CCTC	5 cut(s)	36, 208, 247, 271, 383
MseI	TTAA	1 cut(s)	108
NdeII	GATC	1 cut(s)	170
NlaIII	CATG	1 cut(s)	266
NlaIV	GGNNCC	1 cut(s)	178
PaeR7I	CTCGAG	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	148, 194
PflFI	GACNNNGTC	1 cut(s)	263
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Psp1406I	AACGTT	1 cut(s)	36
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	272
PspXI	VCTCGAGB	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	134
PsyI	GACNNNGTC	1 cut(s)	263
RsaI	GTAC	2 cut(s)	57, 395
RsaNI	GTAC	2 cut(s)	56, 394
SaqAI	TTAA	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	170
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	1 cut(s)	227
SfcI	CTRYAG	1 cut(s)	130
Sfr274I	CTCGAG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	272
SlaI	CTCGAG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
Sse9I	AATT	2 cut(s)	21, 159
SsiI	CCGC	1 cut(s)	168
SspMI	CTAG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	209
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	28
TasI	AATT	2 cut(s)	21, 159
TfiI	GAWTC	2 cut(s)	148, 194
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	214
TspDTI	ATGAA	2 cut(s)	17, 108
TspGWI	ACGGA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	214
Tth111I	GACNNNGTC	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	2 cut(s)	21, 159
XhoI	CTCGAG	1 cut(s)	27
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.