Rmu_sc0000281.1_g000007
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000281.1
OG0004872
Physical Location & Seq
Forward (+)
34629 .. 36306
1678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000281.1_g000007.1.cds

Sequence Viewer

Length: 849 bp
atgtacggcctctggctctcccaacgccgccgccaccacttggacaactatgacgacggccaccgtgcccagccctataatctgtcccgcaaaaggcccagccctctcagcccggcaagaagcagttcatcatcaaacccttcaaaggtttggcctcgatcccaaagctcgcgtctgtcacgctactactgtcagtctcgtaaaattaggagccaaagccaagcaccaatccgccgtcccttcctcctccgcgccaattcgcttttcttcttcttcttcttcttctccgttacatttctcccctccgacgacgtcgtttactgcttcgtgcttgatcgaccagctcagggccttgagttgatgcctaatgacatgttcaaaagttggttgtccgtggtaaatcaacatgtaagtttgcataatgatctgaagacaaagtttatcgaaggggccaaagaacgtaaagaactctacaacaaggtgttagagttgaaaggaaacataagggtcttttgcaggtgtaggcctctaaactctgaggaagtttcagcaggagcttcaatggctattgactttgaatctgagaaagaaggtgagcttgttgtcaagtcaaatggggttacaagaaggacctttaagtttgatgcagttttcggccctcaagcagaccaagctgatgtcttcgaagacacagctccatttgcaacctcagttctagatgggtacaatgtctgcatatttgcttacggacagactgaaagtggaaaaacctttacaatggagggaacggaagaagctcggggagtcaattttaggactcttgagcaactgtttcgtataataaaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kinesin Malectin

Protein Analysis

282

Amino Acids

32.47

Weight (kDa)

9.36

Isoelectric Point (pI)

62.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 507
AatII GACGTC 1 cut(s) 315
Acc36I ACCTGC 1 cut(s) 507
AccB7I CCANNNNNTGG 1 cut(s) 40
AccII CGCG 2 cut(s) 172, 252
AciI CCGC 5 cut(s) 28, 31, 88, 232, 250
AclWI GGATC 1 cut(s) 153
AcoI YGGCCR 1 cut(s) 58
AcuI CTGAAG 1 cut(s) 449
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 2 cut(s) 5, 725
AfiI CCNNNNNNNGG 4 cut(s) 40, 93, 145, 347
AflIII ACRYGT 2 cut(s) 372, 406
AgsI TTSAA 5 cut(s) 144, 379, 493, 561, 578
AjuI GAANNNNNNNTTGG 2 cut(s) 248, 280
AluBI AGCT 7 cut(s) 168, 344, 557, 598, 674, 695, 797
AluI AGCT 7 cut(s) 168, 344, 557, 598, 674, 695, 797
Alw26I GTCTC 1 cut(s) 201
AlwI GGATC 1 cut(s) 153
Ama87I CYCGRG 1 cut(s) 798
AoxI GGCC 8 cut(s) 7, 58, 95, 152, 349, 450, 524, 655
ArsI GACNNNNNNTTYG 2 cut(s) 157, 189
Asp700I GAANNNNTTC 1 cut(s) 124
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 5 cut(s) 96, 349, 450, 630, 656
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 605
AsuII TTCGAA 1 cut(s) 684
AvaI CYCGRG 1 cut(s) 798
AvaII GGWCC 1 cut(s) 630
BaeGI GKGCMC 1 cut(s) 70
BbsI GAAGAC 3 cut(s) 437, 673, 693
BccI CCATC 1 cut(s) 713
BceAI ACGGC 3 cut(s) 22, 73, 219
BcgI CGANNNNNNTGC 2 cut(s) 815, 849
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 1 cut(s) 716
BfuAI ACCTGC 1 cut(s) 507
BisI GCNGC 2 cut(s) 28, 31
BlsI GCNGC 2 cut(s) 29, 32
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 630
BmeT110I CYCGRG 1 cut(s) 798
BmgT120I GGNCC 5 cut(s) 96, 349, 450, 630, 656
BmiI GGNNCC 2 cut(s) 212, 451
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 351, 634
BpiI GAAGAC 3 cut(s) 437, 673, 693
Bpu10I CCTNAGC 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 684
BpuEI CTTGAG 3 cut(s) 374, 645, 842
BpuMI CCSGG 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 393
Bsc4I CCNNNNNNNGG 4 cut(s) 40, 93, 145, 347
BseDI CCNNGG 1 cut(s) 393
BseLI CCNNNNNNNGG 4 cut(s) 40, 93, 145, 347
BseMII CTCAG 5 cut(s) 121, 359, 528, 573, 723
BseRI GAGGAG 1 cut(s) 236
BseSI GKGCMC 1 cut(s) 70
BseYI CCCAGC 2 cut(s) 69, 98
Bsh1236I CGCG 2 cut(s) 172, 252
BshFI GGCC 8 cut(s) 9, 60, 97, 154, 351, 452, 526, 657
BsiHKCI CYCGRG 1 cut(s) 798
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 2 cut(s) 70, 222
BslI CCNNNNNNNGG 4 cut(s) 40, 93, 145, 347
BsmAI GTCTC 1 cut(s) 201
BsmFI GGGAC 2 cut(s) 70, 222
BsnI GGCC 8 cut(s) 9, 60, 97, 154, 351, 452, 526, 657
BsoBI CYCGRG 1 cut(s) 798
Bsp119I TTCGAA 1 cut(s) 684
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 3 cut(s) 158, 334, 424
BspACI CCGC 5 cut(s) 28, 31, 88, 232, 250
BspANI GGCC 8 cut(s) 9, 60, 97, 154, 351, 452, 526, 657
BspCNI CTCAG 5 cut(s) 120, 358, 529, 574, 722
BspFNI CGCG 2 cut(s) 172, 252
BspLI GGNNCC 2 cut(s) 212, 451
BspMI ACCTGC 1 cut(s) 507
BspPI GGATC 1 cut(s) 153
BspT104I TTCGAA 1 cut(s) 684
BssECI CCNNGG 1 cut(s) 393
BssMI GATC 3 cut(s) 158, 334, 424
BssNI GRCGYC 1 cut(s) 312
Bst4CI ACNGT 3 cut(s) 65, 191, 831
BstACI GRCGYC 1 cut(s) 312
BstBI TTCGAA 1 cut(s) 684
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 5 cut(s) 107, 345, 537, 582, 709
BstDSI CCRYGG 1 cut(s) 393
BstFNI CGCG 2 cut(s) 172, 252
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 3 cut(s) 161, 337, 427
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 3 cut(s) 158, 334, 424
BstMWI GCNNNNNNNGC 4 cut(s) 108, 563, 671, 701
BstNSI RCATGY 2 cut(s) 376, 410
BstSCI CCNGG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 2 cut(s) 172, 252
BstV2I GAAGAC 3 cut(s) 437, 673, 693
BsuRI GGCC 8 cut(s) 9, 60, 97, 154, 351, 452, 526, 657
BtgI CCRYGG 1 cut(s) 393
BveI ACCTGC 1 cut(s) 507
Cac8I GCNNGC 1 cut(s) 170
CfoI GCGC 1 cut(s) 254
Cfr13I GGNCC 5 cut(s) 96, 349, 450, 630, 656
CseI GACGC 1 cut(s) 161
Csp6I GTAC 2 cut(s) 4, 724
CviAII CATG 2 cut(s) 373, 407
CviQI GTAC 2 cut(s) 4, 724
DdeI CTNAG 5 cut(s) 107, 345, 537, 582, 709
DpnI GATC 3 cut(s) 160, 336, 426
DpnII GATC 3 cut(s) 158, 334, 424
EaeI YGGCCR 1 cut(s) 58
EciI GGCGGA 1 cut(s) 221
Eco147I AGGCCT 1 cut(s) 526
Eco47I GGWCC 1 cut(s) 630
Eco57I CTGAAG 1 cut(s) 449
Eco88I CYCGRG 1 cut(s) 798
EcoO109I RGGNCCY 2 cut(s) 349, 630
FaeI CATG 2 cut(s) 376, 410
FaiI YATR 8 cut(s) 51, 78, 374, 408, 420, 503, 737, 839
FalI AAGNNNNNCTT 2 cut(s) 582, 614
FaqI GGGAC 2 cut(s) 70, 222
FatI CATG 2 cut(s) 372, 406
FauI CCCGC 1 cut(s) 95
Fnu4HI GCNGC 2 cut(s) 28, 31
Fsp4HI GCNGC 2 cut(s) 28, 31
FspBI CTAG 1 cut(s) 716
GlaI GCGC 1 cut(s) 253
GluI GCNGC 2 cut(s) 28, 31
GsaI CCCAGC 2 cut(s) 73, 102
HaeIII GGCC 8 cut(s) 9, 60, 97, 154, 351, 452, 526, 657
HapII CCGG 1 cut(s) 113
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 2 cut(s) 376, 410
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HinfI GANTC 3 cut(s) 578, 804, 817
HpaII CCGG 1 cut(s) 113
HphI GGTGA 1 cut(s) 605
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 4 cut(s) 307, 429, 538, 583
Hpy188III TCNNGA 2 cut(s) 716, 821
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 4 cut(s) 59, 311, 314, 317
HpyAV CCTTC 5 cut(s) 150, 250, 440, 584, 621
HpyCH4III ACNGT 3 cut(s) 65, 191, 831
HpyCH4IV ACGT 2 cut(s) 312, 460
HpyCH4V TGCA 5 cut(s) 418, 516, 647, 704, 735
HpyF10VI GCNNNNNNNGC 4 cut(s) 108, 563, 671, 701
HpyF3I CTNAG 5 cut(s) 107, 345, 537, 582, 709
HpySE526I ACGT 2 cut(s) 312, 460
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 2 cut(s) 376, 410
HspAI GCGC 1 cut(s) 252
Kzo9I GATC 3 cut(s) 158, 334, 424
LmnI GCTCC 3 cut(s) 210, 554, 700
LpnPI CCDG 7 cut(s) 83, 112, 126, 332, 354, 502, 537
LweI GCATC 2 cut(s) 351, 634
MaeI CTAG 1 cut(s) 716
MaeII ACGT 2 cut(s) 312, 460
MaeIII GTNAC 3 cut(s) 177, 289, 619
MalI GATC 3 cut(s) 160, 336, 426
MboI GATC 3 cut(s) 158, 334, 424
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 3 cut(s) 204, 256, 808
MlyI GAGTC 2 cut(s) 811, 813
MmeI TCCRAC 1 cut(s) 330
MroXI GAANNNNTTC 1 cut(s) 124
MseI TTAA 1 cut(s) 636
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 2 cut(s) 172, 252
MwoI GCNNNNNNNGC 4 cut(s) 108, 563, 671, 701
NciI CCSGG 1 cut(s) 113
NdeII GATC 3 cut(s) 158, 334, 424
NlaIII CATG 2 cut(s) 376, 410
NlaIV GGNNCC 2 cut(s) 212, 451
NmuCI GTSAC 1 cut(s) 177
NspI RCATGY 2 cut(s) 376, 410
NspV TTCGAA 1 cut(s) 684
PaqCI CACCTGC 1 cut(s) 507
PceI AGGCCT 1 cut(s) 526
PciI ACATGT 2 cut(s) 372, 406
PdmI GAANNNNTTC 1 cut(s) 124
PfeI GAWTC 1 cut(s) 578
PflFI GACNNNGTC 1 cut(s) 311
PflMI CCANNNNNTGG 1 cut(s) 40
PkrI GCNGC 2 cut(s) 29, 32
PleI GAGTC 2 cut(s) 811, 812
PpsI GAGTC 2 cut(s) 811, 812
PpuMI RGGWCCY 1 cut(s) 630
PscI ACATGT 2 cut(s) 372, 406
Psp5II RGGWCCY 1 cut(s) 630
PspFI CCCAGC 2 cut(s) 69, 98
PspN4I GGNNCC 2 cut(s) 212, 451
PspPI GGNCC 5 cut(s) 96, 349, 450, 630, 656
PspPPI RGGWCCY 1 cut(s) 630
PsyI GACNNNGTC 1 cut(s) 311
RsaI GTAC 2 cut(s) 5, 725
RsaNI GTAC 2 cut(s) 4, 724
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 2 cut(s) 28, 31
Sau3AI GATC 3 cut(s) 158, 334, 424
Sau96I GGNCC 5 cut(s) 96, 349, 450, 630, 656
SchI GAGTC 2 cut(s) 811, 813
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 70
SfaNI GCATC 2 cut(s) 351, 634
SfuI TTCGAA 1 cut(s) 684
SinI GGWCC 1 cut(s) 630
SmlI CTYRAG 3 cut(s) 353, 660, 821
SmoI CTYRAG 3 cut(s) 353, 660, 821
Sse9I AATT 3 cut(s) 204, 256, 808
SseBI AGGCCT 1 cut(s) 526
SsiI CCGC 5 cut(s) 28, 31, 88, 232, 250
SspMI CTAG 1 cut(s) 716
StuI AGGCCT 1 cut(s) 526
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 3 cut(s) 65, 191, 831
TaiI ACGT 2 cut(s) 315, 463
TaqI TCGA 4 cut(s) 157, 337, 444, 684
TasI AATT 3 cut(s) 204, 256, 808
TauI GCSGC 2 cut(s) 30, 33
TfiI GAWTC 1 cut(s) 578
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TseFI GTSAC 1 cut(s) 177
Tsp45I GTSAC 1 cut(s) 177
TspDTI ATGAA 1 cut(s) 117
TspGWI ACGGA 4 cut(s) 277, 382, 762, 803
Tth111I GACNNNGTC 1 cut(s) 311
Van91I CCANNNNNTGG 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 630
XbaI TCTAGA 1 cut(s) 715
XceI RCATGY 2 cut(s) 376, 410
XmnI GAANNNNTTC 1 cut(s) 124
XspI CTAG 1 cut(s) 716
ZraI GACGTC 1 cut(s) 313
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.