Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004872

Physical Location & Seq

Genomic Coordinates Reverse (-)

17617854 .. 17618849

Gene Structure 996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0126800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTTATGGAAATTTTTGCATGGACGTTTGCTTACTGATGATATCTTACAACGTCGAGGTTTCCATCTAGCATCGATCTGTTCTCTTTGTCGTCTTGGTAATGAAACCTCGCATCATCTCTTTTTTGATTGCCCATTTGCTGCTTCTATTTGGGGGAATGTATTGGACTTGTTTCAGGTGGCTACTCCTTTCGCTGATATTAATTCTTTTTTTTCTTATCCAATTCGCCATGGTTTTGGTTCCCAATTGAGTATTATATGGTGGGGTATGATTGGAGCTGGTTTTTATGCTATTTGGCATGCGAGAAACGCTATTCGTTTTCAGGATTCCATGCTGTCGGTGAGGACATTATACCATTCCATTCGGCTTCAACTATTTGAGATTGACTCCCTAAGTAAGGGAACCATGAAGAATTCAGTTGTTGAGCTTTGCATTCTGCGTCAGATAGGTGTTCTTGGGAGACCCCCTAAAGCTCCAAAAATTATAGAGGTTATGTGGCATACTCCTTCTATTTTACAAGTTAAGGTTAATACTGATGGTGCAGCTAGAGGCACTCCCGGTCCCGCAGGTTTTGGTGGCATCTTTCGTGATCATTTGGGGCGTGTGCTTGGTTGTTTTGCGGGGGCTCTTGGGGTGGCCTATGCTTTGGAGGCTGAGCTTCAGGCAGTGATTCATGCTATTCATATTGCATCACAGAACGGTTGGCGTTCCGTATGGATTGAAAGTGACTCTGCTTTGGTAATTCATTTTTTGTCTTCTCTTTCGAGTGATGTACCATGGCGATACTCTACCAATTGGTTCAAATGTCGGGTTATGCTGGCATCTATGTCGGTGAAAGTTTCTCATATCTATCACGAAGGCAATCAGGTAGCGGATTCTTTAGCTAATTTTGGGGCAAATCAGGTTGGTGTTCATTGGTGGGACTCTTGTCCTCCTTGTGCACTTGCGGCATATTCCCGAGATTTGGCAGGCCTTTCTAATTTCAGGTTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin Malectin

Protein Analysis

331

Amino Acids

36.87

Weight (kDa)

8.81

Isoelectric Point (pI)

38.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	1 - 51	7.2e-13	zinc-binding in reverse transcriptase
RNase_H	PF00075	174 - 298	1.1e-06	RNase H
RVT_3	PF13456	177 - 297	2.4e-23	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004872)

Species	Orthologous Gene IDs
malus_domestica	MD04G1205200.v1.1
pyrus_communis	pycom03g16180 pycom04g18130
rosa_chinensis	RchiOBHm_Chr2g0147251
rosa_laevigata	RLG00000001747 RLG00000011422 RLG00000027814
rosa_multiflora	Rmu_sc0000239.1_g000021 Rmu_sc0000281.1_g000007 Rmu_sc0012870.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042640 Rroxscaffold_2G00137820 Rroxscaffold_3G00246700 Rroxscaffold_4G00310320 Rroxscaffold_5G00348420
rosa_rugosa	Rorug01G0187600 Rorug03G0334800 Rorug05G0314300 Rorug05G0314400 Rorug05G0314500 Rorug05G0314600 Rorug06G0126800
rosa_samantha	Rh1CG247300 Rh1DG034400 Rh4CG158400 Rh5AG257400 Rh5AG425700 Rh5BG372700 Rh5BG554500 Rh5BG555000 Rh5CG577300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	557
AciI	CCGC	4 cut(s)	564, 620, 872, 947
AcsI	RAATTY	2 cut(s)	11, 412
AcuI	CTGAAG	1 cut(s)	644
AfaI	GTAC	1 cut(s)	774
AfiI	CCNNNNNNNGG	2 cut(s)	397, 964
AgsI	TTSAA	3 cut(s)	371, 722, 802
AluBI	AGCT	6 cut(s)	278, 427, 473, 545, 658, 884
AluI	AGCT	6 cut(s)	278, 427, 473, 545, 658, 884
Alw21I	GWGCWC	1 cut(s)	943
Alw26I	GTCTC	1 cut(s)	454
Alw44I	GTGCAC	1 cut(s)	939
Ama87I	CYCGRG	1 cut(s)	957
AoxI	GGCC	2 cut(s)	636, 970
ApaLI	GTGCAC	1 cut(s)	939
ApeKI	GCWGC	2 cut(s)	140, 542
ApoI	RAATTY	2 cut(s)	11, 412
AseI	ATTAAT	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	560
AsuC2I	CCSGG	1 cut(s)	558
AsuHPI	GGTGA	2 cut(s)	352, 844
AvaI	CYCGRG	1 cut(s)	957
AvaII	GGWCC	1 cut(s)	560
BaeGI	GKGCMC	1 cut(s)	943
BanII	GRGCYC	1 cut(s)	628
BbsI	GAAGAC	1 cut(s)	747
Bbv12I	GWGCWC	1 cut(s)	943
BbvI	GCAGC	2 cut(s)	127, 554
BccI	CCATC	2 cut(s)	72, 530
BcgI	CGANNNNNNTGC	2 cut(s)	810, 844
BclI	TGATCA	1 cut(s)	589
BcnI	CCSGG	1 cut(s)	558
BcoDI	GTCTC	1 cut(s)	454
BfaI	CTAG	2 cut(s)	68, 546
BfuAI	ACCTGC	1 cut(s)	557
BisI	GCNGC	3 cut(s)	141, 543, 948
BlpI	GCTNAGC	1 cut(s)	654
BlsI	GCNGC	3 cut(s)	142, 544, 949
Bme1390I	CCNGG	1 cut(s)	558
Bme18I	GGWCC	1 cut(s)	560
BmeT110I	CYCGRG	1 cut(s)	957
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	3 cut(s)	241, 403, 562
BmrFI	CCNGG	1 cut(s)	558
BmsI	GCATC	5 cut(s)	80, 121, 588, 698, 830
BoxI	GACNNNNGTC	1 cut(s)	927
BpiI	GAAGAC	1 cut(s)	747
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
Bpu1102I	GCTNAGC	1 cut(s)	654
BpuMI	CCSGG	1 cut(s)	558
Bsa29I	ATCGAT	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	454
BsaJI	CCNNGG	2 cut(s)	229, 776
Bsc4I	CCNNNNNNNGG	2 cut(s)	397, 964
BseCI	ATCGAT	1 cut(s)	74
BseDI	CCNNGG	2 cut(s)	229, 776
BseLI	CCNNNNNNNGG	2 cut(s)	397, 964
BseMII	CTCAG	1 cut(s)	645
BseSI	GKGCMC	1 cut(s)	943
BseXI	GCAGC	2 cut(s)	127, 554
BsgI	GTGCAG	1 cut(s)	561
BshFI	GGCC	2 cut(s)	638, 972
BshVI	ATCGAT	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	943
BsiHKCI	CYCGRG	1 cut(s)	957
BsiSI	CCGG	1 cut(s)	558
BslFI	GGGAC	2 cut(s)	546, 935
BslI	CCNNNNNNNGG	2 cut(s)	397, 964
BsmAI	GTCTC	1 cut(s)	454
BsmFI	GGGAC	2 cut(s)	546, 935
BsmI	GAATGC	1 cut(s)	432
BsnI	GGCC	2 cut(s)	638, 972
Bso31I	GGTCTC	1 cut(s)	454
BsoBI	CYCGRG	1 cut(s)	957
Bsp1286I	GDGCHC	2 cut(s)	628, 943
Bsp143I	GATC	2 cut(s)	75, 589
Bsp1720I	GCTNAGC	1 cut(s)	654
Bsp19I	CCATGG	2 cut(s)	229, 776
BspACI	CCGC	4 cut(s)	564, 620, 872, 947
BspANI	GGCC	2 cut(s)	638, 972
BspCNI	CTCAG	1 cut(s)	646
BspDI	ATCGAT	1 cut(s)	74
BspLI	GGNNCC	3 cut(s)	241, 403, 562
BspMI	ACCTGC	1 cut(s)	557
BspTNI	GGTCTC	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	229, 776
BssMI	GATC	2 cut(s)	75, 589
BssT1I	CCWWGG	2 cut(s)	229, 776
Bst4CI	ACNGT	1 cut(s)	701
BstC8I	GCNNGC	3 cut(s)	300, 819, 970
BstDEI	CTNAG	2 cut(s)	392, 654
BstDSI	CCRYGG	2 cut(s)	229, 776
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstKTI	GATC	2 cut(s)	78, 592
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	2 cut(s)	75, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	308, 650, 947
BstNSI	RCATGY	1 cut(s)	302
BstPAI	GACNNNNGTC	1 cut(s)	927
BstSCI	CCNGG	1 cut(s)	556
BstSLI	GKGCMC	1 cut(s)	943
BstV1I	GCAGC	2 cut(s)	127, 554
BstV2I	GAAGAC	1 cut(s)	747
BstXI	CCANNNNNNTGG	1 cut(s)	236
Bsu15I	ATCGAT	1 cut(s)	74
BsuRI	GGCC	2 cut(s)	638, 972
BsuTUI	ATCGAT	1 cut(s)	74
BtgI	CCRYGG	2 cut(s)	229, 776
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	1 cut(s)	672
BveI	ACCTGC	1 cut(s)	557
Cac8I	GCNNGC	3 cut(s)	300, 819, 970
Cfr13I	GGNCC	1 cut(s)	560
ClaI	ATCGAT	1 cut(s)	74
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	1 cut(s)	773
CviAII	CATG	7 cut(s)	20, 230, 299, 331, 406, 674, 777
CviQI	GTAC	1 cut(s)	773
DdeI	CTNAG	2 cut(s)	392, 654
DpnI	GATC	2 cut(s)	77, 591
DpnII	GATC	2 cut(s)	75, 589
Eco130I	CCWWGG	2 cut(s)	229, 776
Eco147I	AGGCCT	1 cut(s)	972
Eco24I	GRGCYC	1 cut(s)	628
Eco31I	GGTCTC	1 cut(s)	454
Eco32I	GATATC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	644
Eco88I	CYCGRG	1 cut(s)	957
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoRI	GAATTC	1 cut(s)	412
EcoRV	GATATC	1 cut(s)	43
EcoT14I	CCWWGG	2 cut(s)	229, 776
EcoT38I	GRGCYC	1 cut(s)	628
ErhI	CCWWGG	2 cut(s)	229, 776
FaeI	CATG	7 cut(s)	23, 233, 302, 334, 409, 677, 780
FaqI	GGGAC	2 cut(s)	546, 935
FatI	CATG	7 cut(s)	19, 229, 298, 330, 405, 673, 776
FauI	CCCGC	2 cut(s)	571, 613
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	3 cut(s)	141, 543, 948
FriOI	GRGCYC	1 cut(s)	628
Fsp4HI	GCNGC	3 cut(s)	141, 543, 948
FspBI	CTAG	2 cut(s)	68, 546
GluI	GCNGC	3 cut(s)	141, 543, 948
HaeIII	GGCC	2 cut(s)	638, 972
HapII	CCGG	1 cut(s)	558
HgaI	GACGC	1 cut(s)	428
Hin1II	CATG	7 cut(s)	23, 233, 302, 334, 409, 677, 780
HinfI	GANTC	6 cut(s)	326, 386, 670, 728, 875, 923
HpaII	CCGG	1 cut(s)	558
HphI	GGTGA	2 cut(s)	352, 844
Hpy166II	GTNNAC	1 cut(s)	941
Hpy188I	TCNGA	1 cut(s)	444
Hpy188III	TCNNGA	4 cut(s)	323, 587, 854, 957
Hpy8I	GTNNAC	1 cut(s)	941
Hpy99I	CGWCG	1 cut(s)	57
HpyAV	CCTTC	2 cut(s)	516, 851
HpyCH4III	ACNGT	1 cut(s)	701
HpyCH4IV	ACGT	2 cut(s)	25, 52
HpyCH4V	TGCA	6 cut(s)	19, 432, 542, 689, 941, 992
HpyF10VI	GCNNNNNNNGC	3 cut(s)	308, 650, 947
HpyF3I	CTNAG	2 cut(s)	392, 654
HpySE526I	ACGT	2 cut(s)	25, 52
Hsp92II	CATG	7 cut(s)	23, 233, 302, 334, 409, 677, 780
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	2 cut(s)	75, 589
LmnI	GCTCC	2 cut(s)	275, 478
Lsp1109I	GCAGC	2 cut(s)	127, 554
LweI	GCATC	5 cut(s)	80, 121, 588, 698, 830
MaeI	CTAG	2 cut(s)	68, 546
MaeII	ACGT	2 cut(s)	25, 52
MaeIII	GTNAC	1 cut(s)	725
MalI	GATC	2 cut(s)	77, 591
MboI	GATC	2 cut(s)	75, 589
MboII	GAAGA	2 cut(s)	421, 747
MfeI	CAATTG	2 cut(s)	245, 793
MhlI	GDGCHC	2 cut(s)	628, 943
MlyI	GAGTC	3 cut(s)	380, 722, 917
MnlI	CCTC	7 cut(s)	50, 118, 336, 481, 542, 643, 942
MseI	TTAA	3 cut(s)	201, 522, 528
MspI	CCGG	1 cut(s)	558
MspR9I	CCNGG	1 cut(s)	558
MunI	CAATTG	2 cut(s)	245, 793
Mva1269I	GAATGC	1 cut(s)	432
MwoI	GCNNNNNNNGC	3 cut(s)	308, 650, 947
NciI	CCSGG	1 cut(s)	558
NcoI	CCATGG	2 cut(s)	229, 776
NdeII	GATC	2 cut(s)	75, 589
NlaIII	CATG	7 cut(s)	23, 233, 302, 334, 409, 677, 780
NlaIV	GGNNCC	3 cut(s)	241, 403, 562
NmuCI	GTSAC	1 cut(s)	725
NspI	RCATGY	1 cut(s)	302
PaeI	GCATGC	1 cut(s)	302
PceI	AGGCCT	1 cut(s)	972
PctI	GAATGC	1 cut(s)	432
PfeI	GAWTC	3 cut(s)	326, 670, 875
PkrI	GCNGC	3 cut(s)	142, 544, 949
PleI	GAGTC	3 cut(s)	380, 722, 917
PpsI	GAGTC	3 cut(s)	380, 722, 917
PshAI	GACNNNNGTC	1 cut(s)	927
PshBI	ATTAAT	1 cut(s)	201
PspN4I	GGNNCC	3 cut(s)	241, 403, 562
PspPI	GGNCC	1 cut(s)	560
RsaI	GTAC	1 cut(s)	774
RsaNI	GTAC	1 cut(s)	773
SaqAI	TTAA	3 cut(s)	201, 522, 528
SatI	GCNGC	3 cut(s)	141, 543, 948
Sau3AI	GATC	2 cut(s)	75, 589
Sau96I	GGNCC	1 cut(s)	560
SchI	GAGTC	3 cut(s)	380, 722, 917
ScrFI	CCNGG	1 cut(s)	558
SduI	GDGCHC	2 cut(s)	628, 943
SfaNI	GCATC	5 cut(s)	80, 121, 588, 698, 830
SinI	GGWCC	1 cut(s)	560
SphI	GCATGC	1 cut(s)	302
SseBI	AGGCCT	1 cut(s)	972
SsiI	CCGC	4 cut(s)	564, 620, 872, 947
SspMI	CTAG	2 cut(s)	68, 546
StuI	AGGCCT	1 cut(s)	972
StyD4I	CCNGG	1 cut(s)	556
StyI	CCWWGG	2 cut(s)	229, 776
TaaI	ACNGT	1 cut(s)	701
TaiI	ACGT	2 cut(s)	28, 55
TaqI	TCGA	3 cut(s)	55, 74, 764
TauI	GCSGC	1 cut(s)	950
TfiI	GAWTC	3 cut(s)	326, 670, 875
Tru1I	TTAA	3 cut(s)	201, 522, 528
Tru9I	TTAA	3 cut(s)	201, 522, 528
TscAI	CASTG	1 cut(s)	672
TseFI	GTSAC	1 cut(s)	725
TseI	GCWGC	2 cut(s)	140, 542
Tsp45I	GTSAC	1 cut(s)	725
TspDTI	ATGAA	6 cut(s)	117, 422, 662, 671, 734, 902
TspGWI	ACGGA	1 cut(s)	700
TspRI	CASTG	1 cut(s)	672
VneI	GTGCAC	1 cut(s)	939
VpaK11BI	GGWCC	1 cut(s)	560
VspI	ATTAAT	1 cut(s)	201
XagI	CCTNNNNNAGG	1 cut(s)	395
XapI	RAATTY	2 cut(s)	11, 412
XceI	RCATGY	1 cut(s)	302
XspI	CTAG	2 cut(s)	68, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.