RLG00000011422

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004872
Physical Location & Seq
Reverse (-)
9330580 .. 9331194
615 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011422

Sequence Viewer

Length: 390 bp
ATGGCCCATCATCGTAAACCTCTCTCATATCCAATCTCTCTGGCTGATATGGACGGCCTCTGGCTCTCCCAACGCTACCACAACCACTTTGACATTTACGACGACAACCGTCGTGCCAGCCCAACAATTTGTCCTTCAAAAAGACCCAGCCCCCTCAGCCCGGCAAGAAGCAGTTCATCATCGAACCTTTTCAAATGTTTGGCCTTGATCCCAAAGCTCACGTTTGTCATGTTTGGGCTGATCTTAATTGCAATTGGGTTGAATGGAGTAGCAGACAAGTATATTGGGGAGCCCTTGGATCGCCATCATCGTAGCCGTTCCTGTCAGTCTCTGTTACTGTTTCTGTGTAATTGGGCAATGGCGTGCAGGCCTACTTCTCCTACCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.55

Weight (kDa)

9.33

Isoelectric Point (pI)

76.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 202, 306
AfiI CCNNNNNNNGG 1 cut(s) 160
AgsI TTSAA 3 cut(s) 138, 193, 262
AluBI AGCT 1 cut(s) 217
AluI AGCT 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 333
AlwI GGATC 2 cut(s) 202, 306
AlwNI CAGNNNCTG 1 cut(s) 331
AoxI GGCC 4 cut(s) 3, 55, 201, 368
Asp700I GAANNNNTTC 2 cut(s) 172, 188
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 161
BanII GRGCYC 1 cut(s) 294
BbvCI CCTCAGC 1 cut(s) 155
BccI CCATC 2 cut(s) 15, 312
BceAI ACGGC 2 cut(s) 70, 300
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 1 cut(s) 333
Bme1390I CCNGG 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 161
BoxI GACNNNNGTC 1 cut(s) 108
Bpu10I CCTNAGC 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 161
BsaBI GATNNNNATC 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 363
Bse8I GATNNNNATC 1 cut(s) 303
BseDI CCNNGG 1 cut(s) 294
BseJI GATNNNNATC 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMI GCAATG 1 cut(s) 363
BseMII CTCAG 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 146
BsgI GTGCAG 1 cut(s) 385
BshFI GGCC 4 cut(s) 5, 57, 203, 370
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 1 cut(s) 333
BsnI GGCC 4 cut(s) 5, 57, 203, 370
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 3 cut(s) 207, 240, 298
BspANI GGCC 4 cut(s) 5, 57, 203, 370
BspCNI CTCAG 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 291
BspPI GGATC 2 cut(s) 202, 306
BsrDI GCAATG 1 cut(s) 363
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 3 cut(s) 207, 240, 298
BssT1I CCWWGG 1 cut(s) 294
Bst4CI ACNGT 2 cut(s) 110, 339
BstC8I GCNNGC 3 cut(s) 118, 364, 368
BstDEI CTNAG 1 cut(s) 155
BstKTI GATC 3 cut(s) 210, 243, 301
BstMAI GTCTC 1 cut(s) 333
BstMBI GATC 3 cut(s) 207, 240, 298
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstPAI GACNNNNGTC 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 159
BsuRI GGCC 4 cut(s) 5, 57, 203, 370
Cac8I GCNNGC 3 cut(s) 118, 364, 368
CaiI CAGNNNCTG 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 4
CviAII CATG 1 cut(s) 229
DdeI CTNAG 1 cut(s) 155
DpnI GATC 3 cut(s) 209, 242, 300
DpnII GATC 3 cut(s) 207, 240, 298
Eco130I CCWWGG 1 cut(s) 294
Eco147I AGGCCT 1 cut(s) 370
Eco24I GRGCYC 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 1 cut(s) 232
FaiI YATR 4 cut(s) 28, 50, 230, 282
FatI CATG 1 cut(s) 228
FriOI GRGCYC 1 cut(s) 294
GsaI CCCAGC 1 cut(s) 150
HaeIII GGCC 4 cut(s) 5, 57, 203, 370
HapII CCGG 1 cut(s) 161
Hin1II CATG 1 cut(s) 232
HpaII CCGG 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 17
Hpy99I CGWCG 2 cut(s) 104, 114
HpyAV CCTTC 1 cut(s) 144
HpyCH4III ACNGT 2 cut(s) 110, 339
HpyCH4IV ACGT 1 cut(s) 221
HpyCH4V TGCA 2 cut(s) 251, 366
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpyF3I CTNAG 1 cut(s) 155
HpySE526I ACGT 1 cut(s) 221
Hsp92II CATG 1 cut(s) 232
Kzo9I GATC 3 cut(s) 207, 240, 298
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 7 cut(s) 26, 46, 130, 160, 174, 334, 352
MaeII ACGT 1 cut(s) 221
MaeIII GTNAC 1 cut(s) 333
MalI GATC 3 cut(s) 209, 242, 300
MboI GATC 3 cut(s) 207, 240, 298
MfeI CAATTG 1 cut(s) 252
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 4 cut(s) 126, 246, 252, 349
MnlI CCTC 3 cut(s) 30, 68, 164
MroXI GAANNNNTTC 2 cut(s) 172, 188
MseI TTAA 1 cut(s) 245
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 161
MunI CAATTG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 156
NciI CCSGG 1 cut(s) 161
NdeII GATC 3 cut(s) 207, 240, 298
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 291
PceI AGGCCT 1 cut(s) 370
PcsI WCGNNNNNNNCGW 1 cut(s) 307
PdmI GAANNNNTTC 2 cut(s) 172, 188
PshAI GACNNNNGTC 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 331
SaqAI TTAA 1 cut(s) 245
Sau3AI GATC 3 cut(s) 207, 240, 298
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 1 cut(s) 161
SduI GDGCHC 1 cut(s) 294
SetI ASST 4 cut(s) 22, 189, 219, 224
Sse9I AATT 4 cut(s) 126, 246, 252, 349
SseBI AGGCCT 1 cut(s) 370
StuI AGGCCT 1 cut(s) 370
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 110, 339
TaiI ACGT 1 cut(s) 224
TaqI TCGA 1 cut(s) 182
TasI AATT 4 cut(s) 126, 246, 252, 349
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 165
XmnI GAANNNNTTC 2 cut(s) 172, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.