Rroxscaffold_4G00310320
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004872
Physical Location & Seq
Reverse (-)
32244659 .. 32247733
3075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00310320.1

Sequence Viewer

Length: 564 bp
ATGTACGGCCTCCGGCTCTCCCAACGCCGCCGCCACCACTCGGACAACTATGACGACGGCCACCGTGCCCACCCCTATAATCCGTCCCGCAAAAGGCCCGCCCCTCTCAGCCCGGCAAGATGCGGTTCATCATCGAACCCTTCAAAGGTCATGGCCTCGATCCCAAAGCTCGCGTCTGTCACGCTGTTAAGGTATAAAGTAGGACGGATAGAGCAGCTGGAAACTTCGATCAACCAAAAGCCCGAGGTGCCAATGCTGTGTAGGCCTCTAAACACCGAGGAAGTTTCAGCAGGAGCTTCAATGGCTATTGACTTTGAATCGAGAAAGAAGGTGAGCTTGTTGTCAAGTCAAATGGGGTTACAAGAAGGACCTTTAAGTTTGATGCAGTTTTCGGCCCTCAAGCAGACCAAGGAAAAGAGAGGAGACAAAACAAAGAGAGAGAGAGGAGAACAGGGAATAAGGAAAAGAAGCAGAAGAGAGGCGGAAAGTTGTTACTCAAAACAAAACAGTAATTCCCGCAGCAAAGCGCGGGCAAATATTACTAGTGAATGTAAAGTAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Kinesin Malectin

Protein Analysis

187

Amino Acids

21.06

Weight (kDa)

10.28

Isoelectric Point (pI)

69.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 247
AccII CGCG 2 cut(s) 173, 529
AciI CCGC 8 cut(s) 28, 31, 88, 99, 123, 482, 517, 529
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 58
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 40, 93, 145
AgsI TTSAA 3 cut(s) 144, 300, 317
AhlI ACTAGT 1 cut(s) 542
AluBI AGCT 4 cut(s) 169, 217, 296, 336
AluI AGCT 4 cut(s) 169, 217, 296, 336
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 1 cut(s) 154
Ama87I CYCGRG 1 cut(s) 242
AoxI GGCC 6 cut(s) 7, 58, 95, 153, 263, 393
ApeKI GCWGC 2 cut(s) 214, 519
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AspLEI GCGC 1 cut(s) 529
AspS9I GGNCC 3 cut(s) 96, 368, 394
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 343
AvaI CYCGRG 1 cut(s) 242
AvaII GGWCC 1 cut(s) 368
BaeGI GKGCMC 1 cut(s) 70
BanI GGYRCC 1 cut(s) 247
BbvI GCAGC 2 cut(s) 226, 531
BceAI ACGGC 2 cut(s) 22, 73
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 417
BcuI ACTAGT 1 cut(s) 542
BfaI CTAG 1 cut(s) 543
BisI GCNGC 4 cut(s) 28, 31, 215, 520
BlsI GCNGC 4 cut(s) 29, 32, 216, 521
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 368
BmeT110I CYCGRG 1 cut(s) 242
BmgT120I GGNCC 3 cut(s) 96, 368, 394
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 110, 372
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 113
BsaJI CCNNGG 3 cut(s) 243, 276, 408
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 93, 145
BseDI CCNNGG 3 cut(s) 243, 276, 408
BseLI CCNNNNNNNGG 3 cut(s) 40, 93, 145
BseMII CTCAG 1 cut(s) 121
BseRI GAGGAG 2 cut(s) 435, 459
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 2 cut(s) 226, 531
Bsh1236I CGCG 2 cut(s) 173, 529
BshFI GGCC 6 cut(s) 9, 60, 97, 155, 265, 395
BshNI GGYRCC 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 242
BsiSI CCGG 2 cut(s) 13, 113
BslFI GGGAC 1 cut(s) 70
BslI CCNNNNNNNGG 3 cut(s) 40, 93, 145
BsmAI GTCTC 1 cut(s) 417
BsmFI GGGAC 1 cut(s) 70
BsnI GGCC 6 cut(s) 9, 60, 97, 155, 265, 395
BsoBI CYCGRG 1 cut(s) 242
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 2 cut(s) 159, 228
BspACI CCGC 8 cut(s) 28, 31, 88, 99, 123, 482, 517, 529
BspANI GGCC 6 cut(s) 9, 60, 97, 155, 265, 395
BspCNI CTCAG 1 cut(s) 120
BspFNI CGCG 2 cut(s) 173, 529
BspLI GGNNCC 1 cut(s) 249
BspPI GGATC 1 cut(s) 154
BspT107I GGYRCC 1 cut(s) 247
BssECI CCNNGG 3 cut(s) 243, 276, 408
BssMI GATC 2 cut(s) 159, 228
BssT1I CCWWGG 1 cut(s) 408
Bst4CI ACNGT 2 cut(s) 65, 509
Bst6I CTCTTC 1 cut(s) 469
BstC8I GCNNGC 3 cut(s) 99, 171, 531
BstDEI CTNAG 1 cut(s) 107
BstFNI CGCG 2 cut(s) 173, 529
BstHHI GCGC 1 cut(s) 529
BstKTI GATC 2 cut(s) 162, 231
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 2 cut(s) 159, 228
BstMWI GCNNNNNNNGC 3 cut(s) 247, 262, 302
BstSCI CCNGG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 2 cut(s) 173, 529
BstV1I GCAGC 2 cut(s) 226, 531
BsuRI GGCC 6 cut(s) 9, 60, 97, 155, 265, 395
Cac8I GCNNGC 3 cut(s) 99, 171, 531
CfoI GCGC 1 cut(s) 529
Cfr13I GGNCC 3 cut(s) 96, 368, 394
CseI GACGC 1 cut(s) 162
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 151
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 107
DpnI GATC 2 cut(s) 161, 230
DpnII GATC 2 cut(s) 159, 228
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 469
EarI CTCTTC 1 cut(s) 469
EciI GGCGGA 1 cut(s) 497
Eco130I CCWWGG 1 cut(s) 408
Eco147I AGGCCT 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 368
Eco88I CYCGRG 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 368
EcoT14I CCWWGG 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 408
FaeI CATG 1 cut(s) 154
FaiI YATR 4 cut(s) 51, 78, 152, 195
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FaqI GGGAC 1 cut(s) 70
FatI CATG 1 cut(s) 150
FauI CCCGC 4 cut(s) 95, 106, 522, 524
Fnu4HI GCNGC 4 cut(s) 28, 31, 215, 520
Fsp4HI GCNGC 4 cut(s) 28, 31, 215, 520
FspBI CTAG 1 cut(s) 543
GlaI GCGC 1 cut(s) 528
GluI GCNGC 4 cut(s) 28, 31, 215, 520
HaeIII GGCC 6 cut(s) 9, 60, 97, 155, 265, 395
HapII CCGG 2 cut(s) 13, 113
HgaI GACGC 1 cut(s) 162
HhaI GCGC 1 cut(s) 529
Hin1II CATG 1 cut(s) 154
Hin6I GCGC 1 cut(s) 527
HinP1I GCGC 1 cut(s) 527
HinfI GANTC 1 cut(s) 317
HpaII CCGG 2 cut(s) 13, 113
HphI GGTGA 1 cut(s) 343
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 1 cut(s) 321
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 3 cut(s) 150, 322, 359
HpyCH4III ACNGT 2 cut(s) 65, 509
HpyCH4V TGCA 1 cut(s) 385
HpyF10VI GCNNNNNNNGC 3 cut(s) 247, 262, 302
HpyF3I CTNAG 1 cut(s) 107
Hsp92II CATG 1 cut(s) 154
HspAI GCGC 1 cut(s) 527
Kzo9I GATC 2 cut(s) 159, 228
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 5 cut(s) 26, 126, 203, 276, 437
Lsp1109I GCAGC 2 cut(s) 226, 531
LweI GCATC 2 cut(s) 110, 372
MaeI CTAG 1 cut(s) 543
MaeIII GTNAC 3 cut(s) 178, 357, 491
MalI GATC 2 cut(s) 161, 230
MboI GATC 2 cut(s) 159, 228
MboII GAAGA 1 cut(s) 486
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 1 cut(s) 511
MseI TTAA 2 cut(s) 188, 374
MspA1I CMGCKG 1 cut(s) 217
MspI CCGG 2 cut(s) 13, 113
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 2 cut(s) 173, 529
MwoI GCNNNNNNNGC 3 cut(s) 247, 262, 302
NciI CCSGG 1 cut(s) 113
NdeII GATC 2 cut(s) 159, 228
NlaIII CATG 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 1 cut(s) 178
PceI AGGCCT 1 cut(s) 265
PfeI GAWTC 1 cut(s) 317
PkrI GCNGC 4 cut(s) 29, 32, 216, 521
PpuMI RGGWCCY 1 cut(s) 368
Psp5II RGGWCCY 1 cut(s) 368
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 3 cut(s) 96, 368, 394
PspPPI RGGWCCY 1 cut(s) 368
PvuII CAGCTG 1 cut(s) 217
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 188, 374
SatI GCNGC 4 cut(s) 28, 31, 215, 520
Sau3AI GATC 2 cut(s) 159, 228
Sau96I GGNCC 3 cut(s) 96, 368, 394
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 70
SetI ASST 9 cut(s) 150, 171, 194, 219, 249, 298, 333, 338, 373
SfaNI GCATC 2 cut(s) 110, 372
SinI GGWCC 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
SpeI ACTAGT 1 cut(s) 542
Sse9I AATT 1 cut(s) 511
SseBI AGGCCT 1 cut(s) 265
SsiI CCGC 8 cut(s) 28, 31, 88, 99, 123, 482, 517, 529
SspI AATATT 1 cut(s) 538
SspMI CTAG 1 cut(s) 543
StuI AGGCCT 1 cut(s) 265
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 2 cut(s) 65, 509
TaqI TCGA 4 cut(s) 134, 158, 227, 320
TasI AATT 1 cut(s) 511
TauI GCSGC 2 cut(s) 30, 33
TfiI GAWTC 1 cut(s) 317
Tru1I TTAA 2 cut(s) 188, 374
Tru9I TTAA 2 cut(s) 188, 374
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 2 cut(s) 214, 519
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 117
TspGWI ACGGA 2 cut(s) 72, 220
VpaK11BI GGWCC 1 cut(s) 368
XspI CTAG 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.