RLG00000027814

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0004872
Physical Location & Seq
Reverse (-)
15479266 .. 15479801
536 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027814

Sequence Viewer

Length: 324 bp
ATGGACGGCCTCTGGCTCTCCCAACGCTACCACAACCACTCTGACATTTACGACGACAGCCGCCGTGCCAGCCCAACAATTTGTCCCGCAAAAAGACCCAGTCCCCTCAGCCCGGCAAGAAGCAATTCATCATCAAACCCTTTCAAAGGTTTGGCCTCGATCCCAAAGCTCGCGTTTGTCACGCAGACAAATATATTGGGGAGCCCTTGGATCGCCGTCATTGCAGCCGTTCTTGTCAATTTTATTGGATTTTGGTTAGGGTTTATGGCTCGATTTGGTTCTGTTGATTGCTTAGTTGACAATAGATACTTGGCTGATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.8

Weight (kDa)

8.99

Isoelectric Point (pI)

64.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 173
AciI CCGC 2 cut(s) 61, 87
AclWI GGATC 2 cut(s) 154, 218
AfiI CCNNNNNNNGG 2 cut(s) 112, 146
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AlwI GGATC 2 cut(s) 154, 218
AoxI GGCC 2 cut(s) 7, 153
ApeKI GCWGC 1 cut(s) 224
Asp700I GAANNNNTTC 1 cut(s) 124
AsuC2I CCSGG 1 cut(s) 113
BanII GRGCYC 1 cut(s) 206
BbvCI CCTCAGC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 236
BceAI ACGGC 4 cut(s) 22, 48, 200, 212
BcnI CCSGG 1 cut(s) 113
BisI GCNGC 2 cut(s) 61, 225
BlsI GCNGC 2 cut(s) 62, 226
Bme1390I CCNGG 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 113
BmrI ACTGGG 1 cut(s) 93
BmuI ACTGGG 1 cut(s) 93
Bpu10I CCTNAGC 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 206
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 146
Bse1I ACTGG 1 cut(s) 99
Bse3DI GCAATG 1 cut(s) 219
BseDI CCNNGG 1 cut(s) 206
BseLI CCNNNNNNNGG 2 cut(s) 112, 146
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 236
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 2 cut(s) 9, 155
BsiSI CCGG 1 cut(s) 113
BslFI GGGAC 2 cut(s) 69, 87
BslI CCNNNNNNNGG 2 cut(s) 112, 146
BsmFI GGGAC 2 cut(s) 69, 87
BsnI GGCC 2 cut(s) 9, 155
Bsp1286I GDGCHC 1 cut(s) 206
Bsp143I GATC 2 cut(s) 159, 210
BspACI CCGC 2 cut(s) 61, 87
BspANI GGCC 2 cut(s) 9, 155
BspCNI CTCAG 1 cut(s) 120
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 203
BspPI GGATC 2 cut(s) 154, 218
BsrDI GCAATG 1 cut(s) 219
BsrI ACTGG 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 2 cut(s) 159, 210
BssT1I CCWWGG 1 cut(s) 206
BstC8I GCNNGC 2 cut(s) 70, 171
BstDEI CTNAG 2 cut(s) 107, 292
BstENI CCTNNNNNAGG 1 cut(s) 144
BstFNI CGCG 1 cut(s) 173
BstKTI GATC 2 cut(s) 162, 213
BstMBI GATC 2 cut(s) 159, 210
BstMWI GCNNNNNNNGC 2 cut(s) 69, 221
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 236
BsuRI GGCC 2 cut(s) 9, 155
Cac8I GCNNGC 2 cut(s) 70, 171
DdeI CTNAG 2 cut(s) 107, 292
DpnI GATC 2 cut(s) 161, 212
DpnII GATC 2 cut(s) 159, 210
Eco130I CCWWGG 1 cut(s) 206
Eco24I GRGCYC 1 cut(s) 206
EcoNI CCTNNNNNAGG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 206
EcoT38I GRGCYC 1 cut(s) 206
ErhI CCWWGG 1 cut(s) 206
FaiI YATR 2 cut(s) 194, 266
FaqI GGGAC 2 cut(s) 69, 87
FauI CCCGC 1 cut(s) 94
Fnu4HI GCNGC 2 cut(s) 61, 225
FriOI GRGCYC 1 cut(s) 206
Fsp4HI GCNGC 2 cut(s) 61, 225
GluI GCNGC 2 cut(s) 61, 225
HaeIII GGCC 2 cut(s) 9, 155
HapII CCGG 1 cut(s) 113
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HpaII CCGG 1 cut(s) 113
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 1 cut(s) 43
Hpy8I GTNNAC 1 cut(s) 298
Hpy99I CGWCG 1 cut(s) 56
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 221
HpyF3I CTNAG 2 cut(s) 107, 292
Kzo9I GATC 2 cut(s) 159, 210
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 3 cut(s) 82, 112, 126
Lsp1109I GCAGC 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 178
MalI GATC 2 cut(s) 161, 212
MboI GATC 2 cut(s) 159, 210
MhlI GDGCHC 1 cut(s) 206
MluCI AATT 3 cut(s) 78, 124, 238
MnlI CCTC 3 cut(s) 20, 116, 166
MroXI GAANNNNTTC 1 cut(s) 124
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 2 cut(s) 69, 221
NciI CCSGG 1 cut(s) 113
NdeII GATC 2 cut(s) 159, 210
NlaIV GGNNCC 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 124
PflFI GACNNNGTC 1 cut(s) 99
PkrI GCNGC 2 cut(s) 62, 226
PspN4I GGNNCC 1 cut(s) 203
PsyI GACNNNGTC 1 cut(s) 99
SatI GCNGC 2 cut(s) 61, 225
Sau3AI GATC 2 cut(s) 159, 210
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 206
SetI ASST 2 cut(s) 151, 171
Sse9I AATT 3 cut(s) 78, 124, 238
SsiI CCGC 2 cut(s) 61, 87
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 206
TaqI TCGA 2 cut(s) 158, 271
TasI AATT 3 cut(s) 78, 124, 238
TauI GCSGC 1 cut(s) 63
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 224
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 117
Tth111I GACNNNGTC 1 cut(s) 99
XagI CCTNNNNNAGG 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.