Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012870.1

Orthogroup ID

OG0004872

Physical Location & Seq

Genomic Coordinates Forward (+)

39645 .. 40672

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012870.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgtactgcctctggctctcccaacgctgccaccaccactcggacaactatgacgacggcctccgtgcccagccctataatctgtcccacaaaaggctcagccccctcagcccggcaagaagcagttcatcatcgaacccttcaaaggtttggcctcaatcccaaagctcgcgtttgtcatgccgctactgtcagtctagcgaaattaggagccaaagccaagcgccaatccaccgcggcctcctcctccgcgctaattcgcttttcctcttcttcttcttctccgttacgcttatcccctctgacaacgtcgtttactgcttcgtacttgatcgaccagctcagggccgggccaaagaacgtaaagaactctacaacaaggtgttagagttgaaaggaaacataagggtcttttgcaggtgtaggcctctaaacactgaggaagtttcagcaggagcttcaatggctattgactttgaatctgagaaagaaggtgagcttgatgtcaagtcaaatggggttacaagaaggacctttaagtttgatgcagttttcggcccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin Malectin

Protein Analysis

187

Amino Acids

21.34

Weight (kDa)

9.28

Isoelectric Point (pI)

70.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004872)

Species	Orthologous Gene IDs
malus_domestica	MD04G1205200.v1.1
pyrus_communis	pycom03g16180 pycom04g18130
rosa_chinensis	RchiOBHm_Chr2g0147251
rosa_laevigata	RLG00000001747 RLG00000011422 RLG00000027814
rosa_multiflora	Rmu_sc0000239.1_g000021 Rmu_sc0000281.1_g000007 Rmu_sc0012870.1_g000005
rosa_roxburghii	Rroxscaffold_1G00042640 Rroxscaffold_2G00137820 Rroxscaffold_3G00246700 Rroxscaffold_4G00310320 Rroxscaffold_5G00348420
rosa_rugosa	Rorug01G0187600 Rorug03G0334800 Rorug05G0314300 Rorug05G0314400 Rorug05G0314500 Rorug05G0314600 Rorug06G0126800
rosa_samantha	Rh1CG247300 Rh1DG034400 Rh4CG158400 Rh5AG257400 Rh5AG425700 Rh5BG372700 Rh5BG554500 Rh5BG555000 Rh5CG577300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	408
Acc36I	ACCTGC	1 cut(s)	408
AccII	CGCG	3 cut(s)	172, 237, 252
AciI	CCGC	4 cut(s)	184, 235, 237, 250
AfaI	GTAC	2 cut(s)	5, 327
AfiI	CCNNNNNNNGG	5 cut(s)	40, 93, 112, 145, 344
AgsI	TTSAA	4 cut(s)	144, 394, 462, 479
AluBI	AGCT	4 cut(s)	168, 341, 458, 499
AluI	AGCT	4 cut(s)	168, 341, 458, 499
AoxI	GGCC	7 cut(s)	58, 152, 238, 346, 351, 425, 556
ApeKI	GCWGC	1 cut(s)	27
Asp700I	GAANNNNTTC	1 cut(s)	124
AspLEI	GCGC	2 cut(s)	226, 254
AspS9I	GGNCC	4 cut(s)	346, 351, 531, 557
AsuC2I	CCSGG	2 cut(s)	113, 350
AsuHPI	GGTGA	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	531
BaeGI	GKGCMC	1 cut(s)	70
BbvCI	CCTCAGC	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	14
BceAI	ACGGC	1 cut(s)	73
BcnI	CCSGG	2 cut(s)	113, 350
BfaI	CTAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	408
BisI	GCNGC	3 cut(s)	28, 184, 238
BlpI	GCTNAGC	1 cut(s)	98
BlsI	GCNGC	3 cut(s)	29, 185, 239
Bme1390I	CCNGG	2 cut(s)	113, 350
Bme18I	GGWCC	1 cut(s)	531
BmgT120I	GGNCC	4 cut(s)	346, 351, 531, 557
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	2 cut(s)	113, 350
BmsI	GCATC	1 cut(s)	535
Bpu10I	CCTNAGC	2 cut(s)	107, 342
Bpu1102I	GCTNAGC	1 cut(s)	98
BpuMI	CCSGG	2 cut(s)	113, 350
BsaJI	CCNNGG	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	5 cut(s)	40, 93, 112, 145, 344
BseDI	CCNNGG	1 cut(s)	235
BseLI	CCNNNNNNNGG	5 cut(s)	40, 93, 112, 145, 344
BseMII	CTCAG	5 cut(s)	112, 121, 356, 429, 474
BseRI	GAGGAG	2 cut(s)	233, 236
BseSI	GKGCMC	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	14
BseYI	CCCAGC	1 cut(s)	69
Bsh1236I	CGCG	3 cut(s)	172, 237, 252
BshFI	GGCC	7 cut(s)	60, 154, 240, 348, 353, 427, 558
BsiSI	CCGG	2 cut(s)	113, 349
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	5 cut(s)	40, 93, 112, 145, 344
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	7 cut(s)	60, 154, 240, 348, 353, 427, 558
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	1 cut(s)	331
Bsp1720I	GCTNAGC	1 cut(s)	98
BspACI	CCGC	4 cut(s)	184, 235, 237, 250
BspANI	GGCC	7 cut(s)	60, 154, 240, 348, 353, 427, 558
BspCNI	CTCAG	5 cut(s)	111, 120, 355, 430, 475
BspFNI	CGCG	3 cut(s)	172, 237, 252
BspLI	GGNNCC	1 cut(s)	212
BspMI	ACCTGC	1 cut(s)	408
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	1 cut(s)	331
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	170
BstDEI	CTNAG	5 cut(s)	98, 107, 342, 438, 483
BstDSI	CCRYGG	1 cut(s)	235
BstFNI	CGCG	3 cut(s)	172, 237, 252
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	2 cut(s)	226, 254
BstKTI	GATC	1 cut(s)	334
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 464
BstSCI	CCNGG	2 cut(s)	111, 348
BstSLI	GKGCMC	1 cut(s)	70
BstUI	CGCG	3 cut(s)	172, 237, 252
BstV1I	GCAGC	1 cut(s)	14
BsuRI	GGCC	7 cut(s)	60, 154, 240, 348, 353, 427, 558
BtgI	CCRYGG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	435
BveI	ACCTGC	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	170
CfoI	GCGC	2 cut(s)	226, 254
Cfr13I	GGNCC	4 cut(s)	346, 351, 531, 557
Cfr42I	CCGCGG	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	4, 326
CviAII	CATG	1 cut(s)	180
CviQI	GTAC	2 cut(s)	4, 326
DdeI	CTNAG	5 cut(s)	98, 107, 342, 438, 483
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Eco147I	AGGCCT	1 cut(s)	427
Eco47I	GGWCC	1 cut(s)	531
EcoO109I	RGGNCCY	1 cut(s)	531
FaeI	CATG	1 cut(s)	183
FaiI	YATR	4 cut(s)	51, 78, 181, 404
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	1 cut(s)	179
Fnu4HI	GCNGC	3 cut(s)	28, 184, 238
Fsp4HI	GCNGC	3 cut(s)	28, 184, 238
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	2 cut(s)	225, 253
GluI	GCNGC	3 cut(s)	28, 184, 238
GsaI	CCCAGC	1 cut(s)	73
HaeII	RGCGCY	1 cut(s)	227
HaeIII	GGCC	7 cut(s)	60, 154, 240, 348, 353, 427, 558
HapII	CCGG	2 cut(s)	113, 349
HhaI	GCGC	2 cut(s)	226, 254
Hin1II	CATG	1 cut(s)	183
Hin6I	GCGC	2 cut(s)	224, 252
HinP1I	GCGC	2 cut(s)	224, 252
HinfI	GANTC	1 cut(s)	479
HpaII	CCGG	2 cut(s)	113, 349
HphI	GGTGA	1 cut(s)	506
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	3 cut(s)	43, 304, 484
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	2 cut(s)	59, 314
HpyAV	CCTTC	3 cut(s)	150, 485, 522
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	2 cut(s)	309, 361
HpyCH4V	TGCA	2 cut(s)	417, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 464
HpyF3I	CTNAG	5 cut(s)	98, 107, 342, 438, 483
HpySE526I	ACGT	2 cut(s)	309, 361
Hsp92II	CATG	1 cut(s)	183
HspAI	GCGC	2 cut(s)	224, 252
KspI	CCGCGG	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	331
LmnI	GCTCC	2 cut(s)	210, 455
LpnPI	CCDG	7 cut(s)	83, 126, 329, 351, 362, 403, 438
Lsp1109I	GCAGC	1 cut(s)	14
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	2 cut(s)	309, 361
MaeIII	GTNAC	2 cut(s)	286, 520
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	4 cut(s)	262, 265, 268, 271
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	2 cut(s)	204, 256
MroXI	GAANNNNTTC	1 cut(s)	124
MseI	TTAA	2 cut(s)	537, 562
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	2 cut(s)	113, 349
MspR9I	CCNGG	2 cut(s)	113, 350
MvnI	CGCG	3 cut(s)	172, 237, 252
MwoI	GCNNNNNNNGC	2 cut(s)	108, 464
NciI	CCSGG	2 cut(s)	113, 350
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	1 cut(s)	183
NlaIV	GGNNCC	1 cut(s)	212
PaqCI	CACCTGC	1 cut(s)	408
PceI	AGGCCT	1 cut(s)	427
PdmI	GAANNNNTTC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	479
PflFI	GACNNNGTC	1 cut(s)	308
PkrI	GCNGC	3 cut(s)	29, 185, 239
PpuMI	RGGWCCY	1 cut(s)	531
Psp5II	RGGWCCY	1 cut(s)	531
PspFI	CCCAGC	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	4 cut(s)	346, 351, 531, 557
PspPPI	RGGWCCY	1 cut(s)	531
PsyI	GACNNNGTC	1 cut(s)	308
RsaI	GTAC	2 cut(s)	5, 327
RsaNI	GTAC	2 cut(s)	4, 326
SacII	CCGCGG	1 cut(s)	238
SaqAI	TTAA	2 cut(s)	537, 562
SatI	GCNGC	3 cut(s)	28, 184, 238
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	4 cut(s)	346, 351, 531, 557
ScrFI	CCNGG	2 cut(s)	113, 350
SduI	GDGCHC	1 cut(s)	70
SfaNI	GCATC	1 cut(s)	535
Sfr303I	CCGCGG	1 cut(s)	238
SgrBI	CCGCGG	1 cut(s)	238
SinI	GGWCC	1 cut(s)	531
Sse9I	AATT	2 cut(s)	204, 256
SseBI	AGGCCT	1 cut(s)	427
SsiI	CCGC	4 cut(s)	184, 235, 237, 250
SspMI	CTAG	1 cut(s)	198
StuI	AGGCCT	1 cut(s)	427
StyD4I	CCNGG	2 cut(s)	111, 348
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	2 cut(s)	312, 364
TaqI	TCGA	2 cut(s)	134, 334
TasI	AATT	2 cut(s)	204, 256
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	2 cut(s)	186, 240
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	2 cut(s)	537, 562
Tru9I	TTAA	2 cut(s)	537, 562
TscAI	CASTG	1 cut(s)	442
TseI	GCWGC	1 cut(s)	27
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	2 cut(s)	53, 274
TspRI	CASTG	1 cut(s)	442
Tth111I	GACNNNGTC	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	531
XmnI	GAANNNNTTC	1 cut(s)	124
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.