RchiOBHm_Chr2g0147251

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0004872
Physical Location & Seq
Forward (+)
64887626 .. 64890529
2904 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51690

Sequence Viewer

Length: 267 bp
ATGGACGACCTCTGGCTCTCCCAATGCTACCACAACCACTCTGACATTTACGACGACAGCCGCCATGCCAGCCCAACAATTTGTCCAGCGAAAAGACCCAGCCCCCTCAGCCCGGCAAGAAGCAGTTCATCATCGAACCCTTTCAAAGGTTTGGCCTCGATCCCGAAGCTCGCGTTTGTCACGAGTAGCAGACAAATATATTGGGGAGCCCTTGGATCGCCGTCATCGCAGCCGTTCTTCTCAGTCTCTATTACTGTTTCTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.57

Weight (kDa)

8.74

Isoelectric Point (pI)

88.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 173
AciI CCGC 1 cut(s) 61
AclWI GGATC 2 cut(s) 154, 223
AfiI CCNNNNNNNGG 2 cut(s) 112, 146
AgsI TTSAA 1 cut(s) 145
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 2 cut(s) 154, 223
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 229
Asp700I GAANNNNTTC 2 cut(s) 124, 140
AsuC2I CCSGG 1 cut(s) 113
BanII GRGCYC 1 cut(s) 211
BauI CACGAG 1 cut(s) 181
BbvCI CCTCAGC 1 cut(s) 107
BbvI GCAGC 1 cut(s) 241
BceAI ACGGC 2 cut(s) 205, 217
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 250
BisI GCNGC 2 cut(s) 61, 230
BlsI GCNGC 2 cut(s) 62, 231
Bme1390I CCNGG 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 113
Bpu10I CCTNAGC 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 211
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 146
BseDI CCNNGG 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 112, 146
BseMII CTCAG 2 cut(s) 121, 255
BseXI GCAGC 1 cut(s) 241
BseYI CCCAGC 1 cut(s) 98
Bsh1236I CGCG 1 cut(s) 173
BshFI GGCC 1 cut(s) 155
BsiSI CCGG 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 112, 146
BsmAI GTCTC 1 cut(s) 250
BsnI GGCC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 2 cut(s) 159, 215
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 2 cut(s) 120, 254
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 2 cut(s) 154, 223
BssECI CCNNGG 1 cut(s) 211
BssMI GATC 2 cut(s) 159, 215
BssSI CACGAG 1 cut(s) 181
BssT1I CCWWGG 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 181
Bst4CI ACNGT 1 cut(s) 256
BstC8I GCNNGC 2 cut(s) 70, 171
BstDEI CTNAG 2 cut(s) 107, 241
BstENI CCTNNNNNAGG 1 cut(s) 144
BstFNI CGCG 1 cut(s) 173
BstKTI GATC 2 cut(s) 162, 218
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 2 cut(s) 159, 215
BstMWI GCNNNNNNNGC 3 cut(s) 69, 108, 226
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 241
BsuRI GGCC 1 cut(s) 155
BtgZI GCGATG 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 70, 171
CviAII CATG 1 cut(s) 65
CviJI RGCY 9 cut(s) 16, 60, 72, 102, 111, 155, 169, 209, 232
CviKI_1 RGCY 9 cut(s) 16, 60, 72, 102, 111, 155, 169, 209, 232
DdeI CTNAG 2 cut(s) 107, 241
DpnI GATC 2 cut(s) 161, 217
DpnII GATC 2 cut(s) 159, 215
Eco130I CCWWGG 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 211
EcoNI CCTNNNNNAGG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 211
FaeI CATG 1 cut(s) 68
FaiI YATR 2 cut(s) 66, 199
FatI CATG 1 cut(s) 64
Fnu4HI GCNGC 2 cut(s) 61, 230
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 2 cut(s) 61, 230
GluI GCNGC 2 cut(s) 61, 230
GsaI CCCAGC 1 cut(s) 102
HaeIII GGCC 1 cut(s) 155
HapII CCGG 1 cut(s) 113
Hin1II CATG 1 cut(s) 68
HpaII CCGG 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 43
Hpy188III TCNNGA 2 cut(s) 163, 181
Hpy99I CGWCG 1 cut(s) 56
HpyCH4III ACNGT 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 108, 226
HpyF3I CTNAG 2 cut(s) 107, 241
Hsp92II CATG 1 cut(s) 68
Kzo9I GATC 2 cut(s) 159, 215
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 4 cut(s) 82, 99, 112, 126
Lsp1109I GCAGC 1 cut(s) 241
MaeIII GTNAC 1 cut(s) 178
MalI GATC 2 cut(s) 161, 217
MboI GATC 2 cut(s) 159, 215
MboII GAAGA 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 1 cut(s) 78
MnlI CCTC 3 cut(s) 20, 116, 166
MroXI GAANNNNTTC 2 cut(s) 124, 140
MspI CCGG 1 cut(s) 113
MspR9I CCNGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 3 cut(s) 69, 108, 226
NciI CCSGG 1 cut(s) 113
NdeII GATC 2 cut(s) 159, 215
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 178
PdmI GAANNNNTTC 2 cut(s) 124, 140
PkrI GCNGC 2 cut(s) 62, 231
PspFI CCCAGC 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 208
SatI GCNGC 2 cut(s) 61, 230
Sau3AI GATC 2 cut(s) 159, 215
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 211
SetI ASST 3 cut(s) 12, 151, 171
Sse9I AATT 1 cut(s) 78
SsiI CCGC 1 cut(s) 61
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 211
TaaI ACNGT 1 cut(s) 256
TaqI TCGA 2 cut(s) 134, 158
TasI AATT 1 cut(s) 78
TauI GCSGC 1 cut(s) 63
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 229
Tsp45I GTSAC 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 117
XagI CCTNNNNNAGG 1 cut(s) 144
XmnI GAANNNNTTC 2 cut(s) 124, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.